Rab1b (RAB1B, member RAS oncogene family) - Rat Genome Database

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Gene: Rab1b (RAB1B, member RAS oncogene family) Rattus norvegicus
Analyze
Symbol: Rab1b
Name: RAB1B, member RAS oncogene family
RGD ID: 1642882
Description: Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including autophagosome assembly; endoplasmic reticulum to Golgi vesicle-mediated transport; and regulation of autophagosome assembly. Is active in synapse. Orthologous to several human genes including RAB1B (RAB1B, member RAS oncogene family); INTERACTS WITH acetamide; acrylamide; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC105830; RAB1B-like, member RAS oncogene family; Rab1bl; ras-related protein Rab-1B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rab1b-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,835,133 - 211,843,408 (-)NCBIGRCr8
mRatBN7.21202,405,759 - 202,413,850 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX50,857,916 - 50,859,762 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1202,405,759 - 202,413,868 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,758,818 - 210,766,910 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,851,200 - 217,859,291 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,542,234 - 210,550,325 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,483,529 - 220,491,469 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,480,834 - 220,491,469 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,414,583 - 227,422,523 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,720,833 - 207,727,458 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1199,945,209 - 199,953,183 (-)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rab1bRatAicardi-Goutieres Syndrome 3  ISORAB1B (Homo sapiens)8554872ClinVar Annotator: match by term: Aicardi-Goutieres syndrome 3ClinVarPMID:28492532
Rab1bRatautosomal recessive cutis laxa type IB  ISORAB1B (Homo sapiens)8554872ClinVar Annotator: match by term: Cutis laxa more ...ClinVarPMID:28492532
Rab1bRatBardet-Biedl syndrome  ISORAB1B (Homo sapiens)8554872ClinVar Annotator: match by term: Bardet-Biedl syndromeClinVarPMID:12118255 more ...
Rab1bRatglycogen storage disease V  ISORAB1B (Homo sapiens)8554872ClinVar Annotator: match by term: Glycogen storage disease and type VClinVarPMID:12118255 more ...
Rab1bRatimmunodeficiency 90  ISORAB1B (Homo sapiens)8554872ClinVar Annotator: match by term: Infections more ...ClinVarPMID:28492532
Rab1bRatintellectual disability  ISORAB1B (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rab1bRatMyocardial Ischemia  ISORAB1B (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16214533

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rab1bRat(1->4)-beta-D-glucan multiple interactionsISORab1b (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of RAB1B mRNACTDPMID:36331819
Rab1bRat1,2-dimethylhydrazine multiple interactionsISORab1b (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of RAB1B mRNACTDPMID:22206623
Rab1bRat17beta-estradiol multiple interactionsISORAB1B (Homo sapiens)6480464[Estradiol co-treated with Bucladesine co-treated with Medroxyprogesterone Acetate] results in increased expression of RAB1B mRNACTDPMID:20823114
Rab1bRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORab1b (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of RAB1B mRNACTDPMID:21570461 and PMID:24680724
Rab1bRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORab1b (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to RAB1B promoter]CTDPMID:19654925
Rab1bRat2,6-dimethoxyphenol multiple interactionsISORAB1B (Homo sapiens)6480464[Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in increased expression of and affects the localization of RAB1B proteinCTDPMID:38598786
Rab1bRat4,4'-sulfonyldiphenol increases expressionISORab1b (Mus musculus)6480464bisphenol S results in increased expression of RAB1B mRNACTDPMID:39298647
Rab1bRat4,4'-sulfonyldiphenol affects methylationISORab1b (Mus musculus)6480464bisphenol S affects the methylation of RAB1B geneCTDPMID:31683443
Rab1bRat4,4'-sulfonyldiphenol decreases methylationISORab1b (Mus musculus)6480464bisphenol S results in decreased methylation of RAB1B exon and bisphenol S results in decreased methylation of RAB1B promoterCTDPMID:33297965
Rab1bRat5-azacytidine increases expressionISORAB1B (Homo sapiens)6480464Azacitidine results in increased expression of RAB1B mRNACTDPMID:20823114
Rab1bRatacetamide decreases expressionEXP 6480464acetamide results in decreased expression of RAB1B mRNACTDPMID:31881176
Rab1bRatacrylamide decreases expressionEXP 6480464Acrylamide results in decreased expression of RAB1B mRNACTDPMID:28959563
Rab1bRatactinomycin D multiple interactionsISORAB1B (Homo sapiens)6480464[Dactinomycin co-treated with nutlin 3] results in increased secretion of RAB1B proteinCTDPMID:38460933
Rab1bRatammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of RAB1B mRNACTDPMID:16483693
Rab1bRatarsenite(3-) multiple interactionsISORAB1B (Homo sapiens)6480464[sodium arsenite results in increased abundance of arsenite] which results in increased expression of RAB1B mRNACTDPMID:23487506
Rab1bRatbenzo[a]pyrene decreases expressionISORAB1B (Homo sapiens)6480464Benzo(a)pyrene results in decreased expression of RAB1B mRNACTDPMID:20106945
Rab1bRatbenzo[a]pyrene multiple interactionsISORab1b (Mus musculus)6480464Benzo(a)pyrene promotes the reaction [AHR protein binds to RAB1B promoter]CTDPMID:19654925
Rab1bRatbisphenol A affects expressionEXP 6480464bisphenol A affects the expression of RAB1B mRNACTDPMID:25181051
Rab1bRatbisphenol A increases expressionISORab1b (Mus musculus)6480464bisphenol A results in increased expression of RAB1B mRNACTDPMID:32156529
Rab1bRatbisphenol A increases expressionISORAB1B (Homo sapiens)6480464bisphenol A results in increased expression of RAB1B proteinCTDPMID:34186270

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Biological Process
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Cellular Component
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rab1bRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Rab1bRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Rab1bRatendomembrane system is_active_inIBACGD:CAL0000194609 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rab1bRatendoplasmic reticulum-Golgi intermediate compartment located_inISORab1b (Mus musculus)1624291 PMID:21187406RGDPMID:21187406
Rab1bRatGolgi apparatus located_inISORAB1B (Homo sapiens)1624291 RGDGO_REF:0000054
Rab1bRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Rab1bRatmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Rab1bRatperinuclear region of cytoplasm located_inIEAUniProtKB-SubCell:SL-01981600115GO_REF:0000044UniProtGO_REF:0000044
Rab1bRatphagophore assembly site membrane located_inISORAB1B (Homo sapiens)1624291 PMID:20545908RGDPMID:20545908
Rab1bRatphagophore assembly site membrane located_inIEAUniProtKB-SubCell:SL-02211600115GO_REF:0000044UniProtGO_REF:0000044
Rab1bRatsynapse is_active_inIDA 10047219PMID:24876496SynGO 
Rab1bRatsynapse is_active_inEXP 10047219PMID:24876496SynGO 
1 to 12 of 12 rows

Molecular Function
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rab1bRatG protein activity enablesIEAEC:3.6.5.21600115GO_REF:0000003UniProtGO_REF:0000003
Rab1bRatGTP binding enablesISSUniProtKB:Q9H0U41600115GO_REF:0000024UniProtGO_REF:0000024
Rab1bRatGTP binding enablesIEAInterPro:IPR0018061600115GO_REF:0000002InterProGO_REF:0000002
Rab1bRatGTP binding enablesIEAInterPro:IPR001806 and InterPro:IPR0052251600115GO_REF:0000002InterProGO_REF:0000002
Rab1bRatGTP binding enablesIEAUniProtKB-KW:KW-03421600115GO_REF:0000043UniProtGO_REF:0000043
Rab1bRatGTP binding enablesISORAB1B (Homo sapiens)1624291 PMID:20937701RGDPMID:20937701
Rab1bRatGTPase activity enablesIEAInterPro:IPR0018061600115GO_REF:0000002InterProGO_REF:0000002
Rab1bRatGTPase activity enablesIBAFB:FBgn0015797 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rab1bRathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Rab1bRatnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Rab1bRatprotein binding enablesISORAB1B (Homo sapiens)1624291UniProtKB:P47224 more ...RGDPMID:15796781 more ...
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#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins. Wilhelm BG, etal., Science. 2014 May 30;344(6187):1023-8. doi: 10.1126/science.1252884.
PMID:1648736   PMID:2493636   PMID:2509243   PMID:12477932   PMID:15632090   PMID:18504258   PMID:18614015   PMID:20458337   PMID:20545908   PMID:20937701   PMID:21187406   PMID:21680502  
PMID:22871113   PMID:23885123   PMID:29476059   PMID:33450132  



Rab1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,835,133 - 211,843,408 (-)NCBIGRCr8
mRatBN7.21202,405,759 - 202,413,850 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX50,857,916 - 50,859,762 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1202,405,759 - 202,413,868 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,758,818 - 210,766,910 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,851,200 - 217,859,291 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,542,234 - 210,550,325 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,483,529 - 220,491,469 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,480,834 - 220,491,469 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,414,583 - 227,422,523 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,720,833 - 207,727,458 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1199,945,209 - 199,953,183 (-)NCBICelera
Cytogenetic Map1q43NCBI
RAB1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,268,639 - 66,277,492 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,268,590 - 66,277,492 (+)EnsemblGRCh38hg38GRCh38
GRCh371166,036,110 - 66,044,963 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,792,632 - 65,801,539 (+)NCBINCBI36Build 36hg18NCBI36
Build 341165,792,680 - 65,801,539NCBI
Cytogenetic Map11q13.2NCBI
HuRef1162,361,564 - 62,370,459 (+)NCBIHuRef
CHM1_11165,920,155 - 65,929,064 (+)NCBICHM1_1
T2T-CHM13v2.01166,262,312 - 66,271,155 (+)NCBIT2T-CHM13v2.0
Rab1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,149,235 - 5,157,024 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,149,233 - 5,157,100 (-)EnsemblGRCm39 Ensembl
GRCm38195,099,207 - 5,106,996 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,099,205 - 5,107,072 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,099,207 - 5,106,996 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,099,207 - 5,106,996 (-)NCBIMGSCv36mm8
Celera194,968,413 - 4,976,202 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.25NCBI
Rab1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,039,632 - 19,047,088 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,039,741 - 19,047,088 (-)NCBIChiLan1.0ChiLan1.0
RAB1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,502,340 - 67,511,293 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,545,212 - 68,554,168 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,634,017 - 61,642,945 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,959,957 - 64,968,843 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,959,957 - 64,968,843 (+)Ensemblpanpan1.1panPan2
RAB1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,026,975 - 51,034,356 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,028,013 - 51,034,473 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,635,724 - 49,643,112 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,065,422 - 52,072,793 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,065,422 - 52,072,757 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,165,421 - 51,172,793 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,739,588 - 50,746,974 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,529,728 - 51,537,099 (-)NCBIUU_Cfam_GSD_1.0
Rab1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,874,909 - 6,881,904 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,317,258 - 3,324,213 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,317,258 - 3,324,208 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,102,354 - 6,116,221 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,110,438 - 6,116,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,185,936 - 5,188,256 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,989,521 - 7,998,371 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,989,101 - 7,998,105 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,271,045 - 105,280,234 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,090,441 - 20,098,913 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,091,120 - 20,098,855 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Rab1b
23 total Variants

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:58
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000042711
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 85 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat

1 to 10 of 85 rows
RH129825  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21202,414,594 - 202,414,778 (+)MAPPERmRatBN7.2
Rnor_6.01220,492,214 - 220,492,397NCBIRnor6.0
Rnor_5.01227,423,268 - 227,423,451UniSTSRnor5.0
RGSC_v3.41207,728,203 - 207,728,386UniSTSRGSC3.4
Celera1199,953,908 - 199,954,091UniSTS
RH 3.4 Map11555.9UniSTS
Cytogenetic Map1q43UniSTS
RH141285  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X50,859,529 - 50,859,709 (-)MAPPERmRatBN7.2
mRatBN7.21202,405,783 - 202,405,963 (+)MAPPERmRatBN7.2
Rnor_6.01220,483,554 - 220,483,733NCBIRnor6.0
Rnor_6.01220,480,853 - 220,481,032NCBIRnor6.0
Rnor_5.01227,411,907 - 227,412,086UniSTSRnor5.0
Rnor_5.01227,414,608 - 227,414,787UniSTSRnor5.0
RGSC_v3.4X73,109,636 - 73,109,815UniSTSRGSC3.4
Celera1199,945,234 - 199,945,413UniSTS
RH 3.4 MapX631.41UniSTS
Cytogenetic Map1q43UniSTS







Ensembl Acc Id: ENSRNOT00000042711   ⟹   ENSRNOP00000067788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX50,857,916 - 50,859,762 (+)Ensembl
Rnor_6.0 Ensembl1220,480,834 - 220,491,469 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098326   ⟹   ENSRNOP00000093740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,407,071 - 202,413,868 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099092   ⟹   ENSRNOP00000084341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,405,759 - 202,413,570 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100410   ⟹   ENSRNOP00000097890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,405,776 - 202,413,868 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100754   ⟹   ENSRNOP00000091504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,405,759 - 202,413,868 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101552   ⟹   ENSRNOP00000086550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,405,761 - 202,413,837 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105874   ⟹   ENSRNOP00000087989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,405,759 - 202,412,737 (-)Ensembl
RefSeq Acc Id: NM_001109979   ⟹   NP_001103449
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,835,133 - 211,843,222 (-)NCBI
mRatBN7.21202,405,759 - 202,413,850 (-)NCBI
Rnor_6.01220,483,529 - 220,491,469 (-)NCBI
Rnor_5.01227,414,583 - 227,422,523 (-)NCBI
RGSC_v3.41207,720,833 - 207,727,458 (-)RGD
Sequence:
RefSeq Acc Id: XM_063280833   ⟹   XP_063136903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,836,662 - 211,843,406 (-)NCBI
RefSeq Acc Id: XR_010063214
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,836,662 - 211,843,408 (-)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_001103449 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136903 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA32105 (Get FASTA)   NCBI Sequence Viewer  
  EDM12459 (Get FASTA)   NCBI Sequence Viewer  
  EDM12460 (Get FASTA)   NCBI Sequence Viewer  
  EDM12461 (Get FASTA)   NCBI Sequence Viewer  
  EDM12462 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000084341
GenBank Protein P10536 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_001103449   ⟸   NM_001109979
- UniProtKB: P10536 (UniProtKB/Swiss-Prot),   G3V6H0 (UniProtKB/TrEMBL),   A6HZ30 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067788   ⟸   ENSRNOT00000042711
Ensembl Acc Id: ENSRNOP00000097890   ⟸   ENSRNOT00000100410
Ensembl Acc Id: ENSRNOP00000091504   ⟸   ENSRNOT00000100754
Ensembl Acc Id: ENSRNOP00000084341   ⟸   ENSRNOT00000099092

Name Modeler Protein Id AA Range Protein Structure
AF-P10536-F1-model_v2 AlphaFold P10536 1-201 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13690643
Promoter ID:EPDNEW_R1167
Type:initiation region
Name:LOC100363782_1
Description:RAB1B, member RAS oncogene family-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01220,491,439 - 220,491,499EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-56699 BioCyc
Ensembl Genes ENSRNOG00000050510 Ensembl
  ENSRNOG00000070897 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000099092 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
InterPro P-loop_NTPase UniProtKB/Swiss-Prot
  Rab UniProtKB/Swiss-Prot
  Small_GTP-bd_dom UniProtKB/Swiss-Prot
  Small_GTPase UniProtKB/Swiss-Prot
NCBI Gene 100126191 ENTREZGENE
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/Swiss-Prot
Pfam Ras UniProtKB/Swiss-Prot
PhenoGen Rab1b PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot
PROSITE RAB UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000050510 RatGTEx
  ENSRNOG00000070897 RatGTEx
SMART ARF UniProtKB/Swiss-Prot
  RAB UniProtKB/Swiss-Prot
  RAN UniProtKB/Swiss-Prot
  RAS UniProtKB/Swiss-Prot
  RHO UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A8I5ZZ07_RAT UniProtKB/TrEMBL
  A0A8I6A3V6_RAT UniProtKB/TrEMBL
  A0A8I6A8V1_RAT UniProtKB/TrEMBL
  A0A8I6AKG8_RAT UniProtKB/TrEMBL
  A0A8I6B6G5_RAT UniProtKB/TrEMBL
  A6HZ30 ENTREZGENE, UniProtKB/TrEMBL
  G3V6H0 ENTREZGENE, UniProtKB/TrEMBL
  P10536 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-24 Rab1b    Rab1bb  RAB1B, member RAS oncogene family  Symbol and Name updated 1299863 APPROVED
2008-11-24 Rab1bb  RAB1B, member RAS oncogene family  Rab1bl  RAB1B-like, member RAS oncogene family  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-17 Rab1bl  RAB1B-like, member RAS oncogene family  Rab1b  RAB1B, member RAS oncogene family  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-10-19 Rab1b  RAB1B, member RAS oncogene family      Symbol and Name status set to provisional 70820 PROVISIONAL