Smarcc2 (SWI/SNF related BAF chromatin remodeling complex subunit C2) - Rat Genome Database

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Pathways
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Gene: Smarcc2 (SWI/SNF related BAF chromatin remodeling complex subunit C2) Rattus norvegicus
Analyze
Symbol: Smarcc2
Name: SWI/SNF related BAF chromatin remodeling complex subunit C2 (Ensembl:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2)
RGD ID: 1597704
Description: Predicted to enable chromatin binding activity and histone binding activity. Involved in negative regulation of DNA-templated transcription. Predicted to be located in chromatin and nucleoplasm. Predicted to be part of SWI/SNF complex; nBAF complex; and npBAF complex. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 8. Orthologous to human SMARCC2 (SWI/SNF related BAF chromatin remodeling complex subunit C2); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC685179; similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2; SWI/SNF complex subunit SMARCC2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,466,223 - 1,494,627 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl71,466,454 - 1,494,626 (+)EnsemblGRCr8
mRatBN7.27881,844 - 910,090 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7881,421 - 909,978 (+)EnsemblmRatBN7.2
Rnor_6.072,875,898 - 2,905,463 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,875,909 - 2,904,453 (+)Ensemblrn6Rnor6.0
Rnor_5.072,851,993 - 2,880,204 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.471,743,425 - 1,771,951 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7754,570 - 783,204 (+)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA)
nBAF complex  (IEA,ISO)
npBAF complex  (IEA,ISO)
nuclear lumen  (IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)
SWI/SNF complex  (IEA,ISO)

Molecular Function
chromatin binding  (IEA,ISO)
protein binding  (IPI,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. REST repression of neuronal genes requires components of the hSWI.SNF complex. Battaglioli E, etal., J Biol Chem. 2002 Oct 25;277(43):41038-45. Epub 2002 Aug 20.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. The spectrum of SWI/SNF mutations, ubiquitous in human cancers. Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.
9. Purification and biochemical heterogeneity of the mammalian SWI-SNF complex. Wang W, etal., EMBO J. 1996 Oct 1;15(19):5370-82.
Additional References at PubMed
PMID:8804307   PMID:10078207   PMID:11018012   PMID:11078522   PMID:11726552   PMID:12368262   PMID:16217013   PMID:17640523   PMID:23643363   PMID:23785148   PMID:24335282   PMID:26514267  
PMID:28131823   PMID:31505169  


Genomics

Comparative Map Data
Smarcc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,466,223 - 1,494,627 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl71,466,454 - 1,494,626 (+)EnsemblGRCr8
mRatBN7.27881,844 - 910,090 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7881,421 - 909,978 (+)EnsemblmRatBN7.2
Rnor_6.072,875,898 - 2,905,463 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,875,909 - 2,904,453 (+)Ensemblrn6Rnor6.0
Rnor_5.072,851,993 - 2,880,204 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.471,743,425 - 1,771,951 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7754,570 - 783,204 (+)NCBICelera
Cytogenetic Map7q11NCBI
SMARCC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,162,359 - 56,189,483 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,162,359 - 56,189,567 (-)Ensemblhg38GRCh38
GRCh371256,556,143 - 56,583,267 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,843,379 - 54,869,544 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341254,843,390 - 54,869,544NCBI
Celera1256,207,780 - 56,235,494 (-)NCBICelera
Cytogenetic Map12q13.2NCBI
HuRef1253,594,695 - 53,620,204 (-)NCBIHuRef
CHM1_11256,523,019 - 56,550,728 (-)NCBICHM1_1
T2T-CHM13v2.01256,129,971 - 56,157,086 (-)NCBIT2T-CHM13v2.0
Smarcc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,294,823 - 128,326,460 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,295,117 - 128,326,351 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3810128,459,182 - 128,490,591 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,459,248 - 128,490,482 (+)Ensemblmm10GRCm38
MGSCv3710127,896,292 - 127,927,230 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610127,862,243 - 127,893,121 (+)NCBIMGSCv36mm8
Celera10130,853,448 - 130,882,127 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.59NCBI
Smarcc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,764,823 - 3,787,901 (-)Ensembl
ChiLan1.0NW_0049554583,764,823 - 3,787,159 (-)NCBIChiLan1.0ChiLan1.0
SMARCC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,142,883 - 38,170,078 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,139,662 - 38,166,846 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,726,150 - 32,753,366 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,977,917 - 33,004,144 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,977,879 - 33,004,144 (+)EnsemblpanPan2panpan1.1
SMARCC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110481,504 - 502,914 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10481,817 - 501,551 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha10545,013 - 566,990 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.010490,173 - 512,172 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10490,179 - 512,125 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110467,623 - 489,601 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010710,697 - 732,674 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010834,753 - 856,729 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Smarcc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,277,454 - 58,298,490 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646572,340 - 592,766 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936646571,745 - 594,365 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,563,400 - 21,586,737 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1521,563,426 - 21,586,790 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,227,371 - 23,250,183 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,103,075 - 52,131,070 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,104,345 - 52,131,079 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037193,853,224 - 193,881,291 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarcc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480211,821,615 - 11,845,403 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480211,821,686 - 11,845,407 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Smarcc2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11155,925,165 - 155,952,744 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Smarcc2
96 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:65
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000028244, ENSRNOT00000061933
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001055673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001055738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001055795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000028244   ⟹   ENSRNOP00000028244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl71,466,454 - 1,494,626 (+)Ensembl
mRatBN7.2 Ensembl7881,933 - 909,939 (+)Ensembl
Rnor_6.0 Ensembl72,875,909 - 2,904,453 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097786   ⟹   ENSRNOP00000091991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl71,466,454 - 1,494,626 (+)Ensembl
mRatBN7.2 Ensembl7881,421 - 909,978 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100913   ⟹   ENSRNOP00000086212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7881,421 - 909,978 (+)Ensembl
RefSeq Acc Id: NM_001427252   ⟹   NP_001414181
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,466,503 - 1,493,877 (+)NCBI
RefSeq Acc Id: XM_001055673   ⟹   XP_001055673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,466,225 - 1,494,627 (+)NCBI
mRatBN7.27881,846 - 910,090 (+)NCBI
Rnor_6.072,875,900 - 2,905,463 (+)NCBI
Rnor_5.072,851,993 - 2,880,204 (+)NCBI
RGSC_v3.471,743,425 - 1,771,951 (+)RGD
Sequence:
RefSeq Acc Id: XM_001055738   ⟹   XP_001055738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,466,228 - 1,494,627 (+)NCBI
mRatBN7.27881,847 - 910,090 (+)NCBI
Rnor_6.072,875,900 - 2,905,463 (+)NCBI
Rnor_5.072,851,993 - 2,880,204 (+)NCBI
RGSC_v3.471,743,425 - 1,771,951 (+)RGD
Sequence:
RefSeq Acc Id: XM_001055795   ⟹   XP_001055795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,466,226 - 1,494,627 (+)NCBI
mRatBN7.27881,846 - 910,090 (+)NCBI
Rnor_6.072,875,898 - 2,905,463 (+)NCBI
Rnor_5.072,851,993 - 2,880,204 (+)NCBI
RGSC_v3.471,743,425 - 1,771,951 (+)RGD
Sequence:
RefSeq Acc Id: XM_006240805   ⟹   XP_006240867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,466,223 - 1,494,627 (+)NCBI
mRatBN7.27881,844 - 910,090 (+)NCBI
Rnor_6.072,875,898 - 2,905,463 (+)NCBI
Rnor_5.072,851,993 - 2,880,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240806   ⟹   XP_006240868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,466,223 - 1,494,627 (+)NCBI
mRatBN7.27881,844 - 910,090 (+)NCBI
Rnor_6.072,875,898 - 2,905,463 (+)NCBI
Rnor_5.072,851,993 - 2,880,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240807   ⟹   XP_006240869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,466,224 - 1,494,627 (+)NCBI
mRatBN7.27881,845 - 910,090 (+)NCBI
Rnor_6.072,875,898 - 2,905,463 (+)NCBI
Rnor_5.072,851,993 - 2,880,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039079999   ⟹   XP_038935927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,466,224 - 1,494,627 (+)NCBI
mRatBN7.27881,845 - 910,090 (+)NCBI
RefSeq Acc Id: XM_039080000   ⟹   XP_038935928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,466,482 - 1,494,627 (+)NCBI
mRatBN7.27881,942 - 910,090 (+)NCBI
RefSeq Acc Id: XM_063264254   ⟹   XP_063120324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,466,224 - 1,494,627 (+)NCBI
RefSeq Acc Id: XM_063264255   ⟹   XP_063120325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,466,224 - 1,494,627 (+)NCBI
RefSeq Acc Id: XM_063264256   ⟹   XP_063120326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,466,226 - 1,494,627 (+)NCBI
RefSeq Acc Id: XP_001055673   ⟸   XM_001055673
- Peptide Label: isoform X6
- UniProtKB: D4A510 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001055795   ⟸   XM_001055795
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AGR8 (UniProtKB/TrEMBL),   D4A510 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001055738   ⟸   XM_001055738
- Peptide Label: isoform X10
- UniProtKB: D4A510 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240867   ⟸   XM_006240805
- Peptide Label: isoform X1
- UniProtKB: D4A510 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240868   ⟸   XM_006240806
- Peptide Label: isoform X2
- UniProtKB: D4A510 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240869   ⟸   XM_006240807
- Peptide Label: isoform X4
- UniProtKB: D4A510 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028244   ⟸   ENSRNOT00000028244
RefSeq Acc Id: XP_038935927   ⟸   XM_039079999
- Peptide Label: isoform X5
- UniProtKB: D4A510 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935928   ⟸   XM_039080000
- Peptide Label: isoform X8
- UniProtKB: D4A510 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091991   ⟸   ENSRNOT00000097786
Ensembl Acc Id: ENSRNOP00000086212   ⟸   ENSRNOT00000100913
RefSeq Acc Id: XP_063120324   ⟸   XM_063264254
- Peptide Label: isoform X7
- UniProtKB: D4A510 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120325   ⟸   XM_063264255
- Peptide Label: isoform X9
- UniProtKB: D4A510 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120326   ⟸   XM_063264256
- Peptide Label: isoform X11
- UniProtKB: D4A510 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414181   ⟸   NM_001427252
- UniProtKB: A0A8I6A5E1 (UniProtKB/TrEMBL),   D4A510 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A510-F1-model_v2 AlphaFold D4A510 1-1135 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694941
Promoter ID:EPDNEW_R5463
Type:multiple initiation site
Name:Smarcc2_1
Description:SWI/SNF related, matrix associated, actin dependent regulatorof chromatin, subfamily c, member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.072,875,955 - 2,876,015EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597704 AgrOrtholog
BioCyc Gene G2FUF-35365 BioCyc
Ensembl Genes ENSRNOG00000031135 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028244 ENTREZGENE
  ENSRNOT00000028244.9 UniProtKB/TrEMBL
  ENSRNOT00000097786 ENTREZGENE
  ENSRNOT00000097786.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro BRCT_dom_sf UniProtKB/TrEMBL
  Chromodomain UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  MARR_BRCT_CHROMO UniProtKB/TrEMBL
  SANT_DNA-bd UniProtKB/TrEMBL
  SANT_eukarya UniProtKB/TrEMBL
  SMARCC_C UniProtKB/TrEMBL
  SMARCC_N UniProtKB/TrEMBL
  SWIRM UniProtKB/TrEMBL
  SWIRM-assoc UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene 685179 ENTREZGENE
PANTHER CHONDROITIN SULFATE PROTEOGLYCAN 5 UniProtKB/TrEMBL
  CHONDROITIN SULFATE PROTEOGLYCAN 5 -RELATED UniProtKB/TrEMBL
Pfam Myb_DNA-binding UniProtKB/TrEMBL
  SWIRM UniProtKB/TrEMBL
  SWIRM-assoc_1 UniProtKB/TrEMBL
  SWIRM-assoc_2 UniProtKB/TrEMBL
  SWIRM-assoc_3 UniProtKB/TrEMBL
PhenoGen Smarcc2 PhenoGen
PROSITE MARR_BRCT_CHROMO UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
  SWIRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031135 RatGTEx
SMART CHROMO UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
Superfamily-SCOP BRCT UniProtKB/TrEMBL
  Homeodomain_like UniProtKB/TrEMBL
UniProt A0A8I6A5E1 ENTREZGENE
  A0A8I6AGR8 ENTREZGENE, UniProtKB/TrEMBL
  D4A510 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-08 Smarcc2  SWI/SNF related BAF chromatin remodeling complex subunit C2  Smarcc2  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-21 Smarcc2  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2  LOC685179  similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC685179  similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2      Symbol and Name status set to provisional 70820 PROVISIONAL