Slc6a19 (solute carrier family 6 member 19) - Rat Genome Database

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Gene: Slc6a19 (solute carrier family 6 member 19) Rattus norvegicus
Analyze
Symbol: Slc6a19
Name: solute carrier family 6 member 19
RGD ID: 1594328
Description: Predicted to enable neutral L-amino acid transmembrane transporter activity. Involved in response to nutrient. Predicted to be located in membrane. Predicted to be active in brush border membrane. Biomarker of hypertension. Human ortholog(s) of this gene implicated in Hartnup disease. Orthologous to human SLC6A19 (solute carrier family 6 member 19); INTERACTS WITH 3-chloropropane-1,2-diol; atrazine; berberine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: b(0)AT1; B0at1; neutral amino acid transporter; sodium-dependent neutral amino acid transporter B(0)AT1; solute carrier family 6 (neurotransmitter transporter), member 19; solute carrier family 6 (neutral amino acid transporter), member 19; solute carrier family 6, member 19; system B(0) neutral amino acid transporter AT1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,414,744 - 31,434,932 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl131,414,744 - 31,433,517 (+)EnsemblGRCr8
mRatBN7.2129,586,191 - 29,604,964 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,586,195 - 29,604,962 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx129,387,324 - 29,406,097 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,387,174 - 35,405,947 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,587,954 - 29,606,725 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0132,199,869 - 32,218,628 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl132,199,810 - 32,220,045 (+)Ensemblrn6Rnor6.0
Rnor_5.0133,624,561 - 33,643,496 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4130,393,331 - 30,412,094 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera128,234,184 - 28,252,964 (+)NCBICelera
Cytogenetic Map1p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
apical plasma membrane  (IEA,ISO,ISS)
brush border membrane  (IBA,IEA,ISO)
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Mutations in SLC6A19, encoding B0AT1, cause Hartnup disorder. Kleta R, etal., Nat Genet. 2004 Sep;36(9):999-1002. Epub 2004 Aug 1.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. High salt intake and the renal expression of amino acid transporters in spontaneously hypertensive rats. Pinho MJ, etal., Am J Physiol Renal Physiol. 2007 Jan 30;.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15044460   PMID:17167413   PMID:17646927   PMID:18424768   PMID:19056867   PMID:19185582   PMID:19556357   PMID:20448142   PMID:23376485   PMID:28915252  


Genomics

Comparative Map Data
Slc6a19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,414,744 - 31,434,932 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl131,414,744 - 31,433,517 (+)EnsemblGRCr8
mRatBN7.2129,586,191 - 29,604,964 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,586,195 - 29,604,962 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx129,387,324 - 29,406,097 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,387,174 - 35,405,947 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,587,954 - 29,606,725 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0132,199,869 - 32,218,628 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl132,199,810 - 32,220,045 (+)Ensemblrn6Rnor6.0
Rnor_5.0133,624,561 - 33,643,496 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4130,393,331 - 30,412,094 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera128,234,184 - 28,252,964 (+)NCBICelera
Cytogenetic Map1p11NCBI
SLC6A19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3851,201,595 - 1,225,111 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl51,201,595 - 1,225,111 (+)Ensemblhg38GRCh38
GRCh3751,201,710 - 1,225,226 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3651,254,766 - 1,275,019 (+)NCBIBuild 36Build 36hg18NCBI36
Celera51,238,608 - 1,262,115 (+)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef51,183,086 - 1,206,530 (+)NCBIHuRef
CHM1_151,198,248 - 1,225,118 (+)NCBICHM1_1
T2T-CHM13v2.051,108,484 - 1,132,085 (+)NCBIT2T-CHM13v2.0
Slc6a19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391373,827,864 - 73,848,899 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1373,827,864 - 73,852,984 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381373,679,745 - 73,700,780 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,679,745 - 73,704,865 (-)Ensemblmm10GRCm38
MGSCv371373,818,605 - 73,838,143 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361374,147,159 - 74,166,697 (-)NCBIMGSCv36mm8
Celera1376,010,112 - 76,029,756 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.14NCBI
Slc6a19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504616,768 - 633,654 (+)Ensembl
ChiLan1.0NW_004955504617,683 - 633,594 (+)NCBIChiLan1.0ChiLan1.0
SLC6A19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v241,461,963 - 1,482,056 (+)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl51,248,802 - 1,272,508 (+)EnsemblpanPan2panpan1.1
SLC6A19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,329,126 - 11,344,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,329,111 - 11,344,293 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3415,838,998 - 15,854,198 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03411,229,799 - 11,244,920 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,229,784 - 11,244,965 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,280,591 - 11,295,588 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,260,140 - 11,275,298 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,471,162 - 11,486,159 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc6a19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,352,755 - 244,371,592 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815515,762 - 532,917 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936815515,928 - 532,877 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,293,943 - 79,310,922 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11679,293,940 - 79,310,922 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21685,952,505 - 85,969,441 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC6A19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.141,031,236 - 1,053,815 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl41,033,125 - 1,056,843 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605435,594,889 - 35,615,960 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc6a19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751591,754 - 607,693 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624751591,846 - 606,362 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc6a19
132 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:82
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000036714
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
13 6 12 29 40 43 14 24 14 6 156 51 2 11 73 55 29

Sequence


Ensembl Acc Id: ENSRNOT00000036714   ⟹   ENSRNOP00000028917
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl131,414,744 - 31,433,517 (+)Ensembl
mRatBN7.2 Ensembl129,586,195 - 29,604,962 (+)Ensembl
Rnor_6.0 Ensembl132,199,810 - 32,220,045 (+)Ensembl
RefSeq Acc Id: NM_001039722   ⟹   NP_001034811
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8131,414,744 - 31,433,517 (+)NCBI
mRatBN7.2129,586,191 - 29,604,964 (+)NCBI
Rnor_6.0132,199,869 - 32,218,628 (+)NCBI
Rnor_5.0133,624,561 - 33,643,496 (+)NCBI
RGSC_v3.4130,393,331 - 30,412,094 (+)RGD
Celera128,234,184 - 28,252,964 (+)RGD
Sequence:
RefSeq Acc Id: XM_039090198   ⟹   XP_038946126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8131,421,894 - 31,434,932 (+)NCBI
mRatBN7.2129,593,341 - 29,604,489 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001034811 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946126 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABP63542 (Get FASTA)   NCBI Sequence Viewer  
  CAI64591 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000028917
  ENSRNOP00000028917.2
GenBank Protein Q2A865 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001034811   ⟸   NM_001039722
- UniProtKB: Q2A865 (UniProtKB/Swiss-Prot),   A4ZVM8 (UniProtKB/Swiss-Prot),   A6JUW5 (UniProtKB/TrEMBL),   A6JUW8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028917   ⟸   ENSRNOT00000036714
RefSeq Acc Id: XP_038946126   ⟸   XM_039090198
- Peptide Label: isoform X1
- UniProtKB: A6JUW6 (UniProtKB/TrEMBL),   A6JUW8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2A865-F1-model_v2 AlphaFold Q2A865 1-634 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689566
Promoter ID:EPDNEW_R91
Type:single initiation site
Name:Slc6a19_1
Description:solute carrier family 6 member 19
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0132,199,855 - 32,199,915EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594328 AgrOrtholog
BioCyc Gene G2FUF-61929 BioCyc
Ensembl Genes ENSRNOG00000026501 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000036714 ENTREZGENE
  ENSRNOT00000036714.4 UniProtKB/Swiss-Prot
InterPro Na/ntran_symport UniProtKB/Swiss-Prot
  Neutral_aa_SLC6 UniProtKB/Swiss-Prot
  SNS_sf UniProtKB/Swiss-Prot
KEGG Report rno:664630 UniProtKB/Swiss-Prot
NCBI Gene 664630 ENTREZGENE
PANTHER PTHR11616 UniProtKB/Swiss-Prot
  SODIUM-DEPENDENT NEUTRAL AMINO ACID TRANSPORTER B(0)AT1 UniProtKB/Swiss-Prot
Pfam SNF UniProtKB/Swiss-Prot
PhenoGen Slc6a19 PhenoGen
PRINTS NANEUSMPORT UniProtKB/Swiss-Prot
  ORPHTRNSPORT UniProtKB/Swiss-Prot
PROSITE NA_NEUROTRAN_SYMP_1 UniProtKB/Swiss-Prot
  NA_NEUROTRAN_SYMP_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000026501 RatGTEx
Superfamily-SCOP SSF161070 UniProtKB/Swiss-Prot
UniProt A4ZVM8 ENTREZGENE
  A6JUW5 ENTREZGENE, UniProtKB/TrEMBL
  A6JUW6 ENTREZGENE, UniProtKB/TrEMBL
  A6JUW8 ENTREZGENE, UniProtKB/TrEMBL
  Q2A865 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A4ZVM8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc6a19  solute carrier family 6 member 19  Slc6a19  solute carrier family 6 (neutral amino acid transporter), member 19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Slc6a19  solute carrier family 6 (neutral amino acid transporter), member 19  Slc6a19  solute carrier family 6 (neurotransmitter transporter), member 19  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-02-26 Slc6a19  solute carrier family 6 (neurotransmitter transporter), member 19  Slc6a19  solute carrier family 6, member 19  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 PROVISIONAL
2006-11-20 B0at1  solute carrier family 6, member 19      Symbol and Name status set to provisional 70820 PROVISIONAL