Rps13-ps10 (ribosomal protein S13, pseudogene 10) - Rat Genome Database

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Gene: Rps13-ps10 (ribosomal protein S13, pseudogene 10) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps13-ps10
Name: ribosomal protein S13, pseudogene 10
RGD ID: 1584372
Description: Orthologous to human RPS13 (ribosomal protein S13).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 40S ribosomal protein S13; LOC684988; ribosomal protein S13-like; similar to ribosomal protein S13
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Rps13  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8330,526,164 - 30,526,696 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2310,128,084 - 10,128,616 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,127,982 - 10,132,444 (-)EnsemblmRatBN7.2
Rnor_6.034,341,229 - 4,341,782 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl34,341,249 - 4,341,771 (-)Ensemblrn6Rnor6.0
Rnor_5.039,696,471 - 9,697,001 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.435,696,540 - 5,697,066 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera34,926,573 - 4,927,125 (-)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Semiquantitative proteomic analysis of rat forebrain postsynaptic density fractions by mass spectrometry. Peng J, etal., J Biol Chem. 2004 May 14;279(20):21003-11. doi: 10.1074/jbc.M400103200. Epub 2004 Mar 12.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps13-ps10
4 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
3 11 43 82 57 60 41 19 41 160 73 74 35 41 19

Sequence


Ensembl Acc Id: ENSRNOT00000034694   ⟹   ENSRNOP00000036690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl34,341,249 - 4,341,771 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096261   ⟹   ENSRNOP00000095846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl310,127,982 - 10,132,444 (-)Ensembl
RefSeq Acc Id: XM_001053043   ⟹   XP_001053043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,128,084 - 10,128,621 (-)NCBI
Rnor_6.034,341,229 - 4,341,782 (-)NCBI
Rnor_5.039,696,471 - 9,697,001 (-)NCBI
RGSC_v3.435,696,540 - 5,697,066 (-)RGD
Sequence:
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62278-F1-model_v2 AlphaFold P62278 1-151 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691920
Promoter ID:EPDNEW_R2437
Type:multiple initiation site
Name:LOC684988_1
Description:similar to ribosomal protein S13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.034,341,761 - 4,341,821EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1584372 AgrOrtholog
BioCyc Gene G2FUF-50335 BioCyc
Ensembl Genes ENSRNOG00000028021 Ensembl
  ENSRNOG00000067444 Ensembl
NCBI Gene 684988 ENTREZGENE
PhenoGen Rps13-ps10 PhenoGen
RatGTEx ENSRNOG00000028021 RatGTEx
  ENSRNOG00000067444 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-15 Rps13-ps10  ribosomal protein S13, pseudogene 10  LOC684988  similar to ribosomal protein S13  Name and Symbol and Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2013-05-24 LOC684988  similar to ribosomal protein S13  LOC100364569  ribosomal protein S13-like  Data merged from RGD:2320791 1643240 APPROVED
2010-05-05 LOC100364569  ribosomal protein S13-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC684988  similar to ribosomal protein S13  LOC687457  similar to ribosomal protein S13  Data merged from RGD:1585348 1643240 APPROVED
2006-11-19 LOC684988  similar to ribosomal protein S13      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687457  similar to ribosomal protein S13      Symbol and Name status set to provisional 70820 PROVISIONAL