Copg1 (coat protein complex I subunit gamma 1) - Rat Genome Database

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Gene: Copg1 (coat protein complex I subunit gamma 1) Rattus norvegicus
Analyze
Symbol: Copg1
Name: coat protein complex I subunit gamma 1 (Ensembl:COPI coat complex subunit gamma 1)
RGD ID: 1565292
Description: Predicted to enable structural molecule activity. Involved in establishment of Golgi localization and organelle transport along microtubule. Located in Golgi membrane. Human ortholog(s) of this gene implicated in immunodeficiency 128. Orthologous to human COPG1 (COPI coat complex subunit gamma 1); INTERACTS WITH 2,6-dinitrotoluene; 4,4'-sulfonyldiphenol; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coatomer protein complex, subunit gamma; coatomer protein complex, subunit gamma 1; coatomer subunit gamma; coatomer subunit gamma-1; Copg; COPI coat complex subunit gamma 1; gamma-1-coat protein; gamma-1-COP; gamma-coat protein; gamma-COP
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,923,644 - 121,949,819 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4121,923,873 - 121,949,812 (+)EnsemblGRCr8
mRatBN7.24120,366,540 - 120,392,502 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,366,542 - 120,415,616 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4125,839,212 - 125,863,727 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,613,989 - 121,638,505 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,238,238 - 120,262,752 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,815,041 - 119,840,997 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,815,139 - 119,864,114 (+)Ensemblrn6Rnor6.0
Rnor_5.04185,062,623 - 185,088,579 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44122,109,613 - 122,134,049 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4109,326,188 - 109,350,625 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
actinomycin D  (ISO)
amiodarone  (EXP)
amitrole  (EXP)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
buspirone  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
clofibrate  (EXP,ISO)
clofibric acid  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
indometacin  (ISO)
inulin  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
methapyrilene  (EXP,ISO)
methimazole  (EXP)
methotrexate  (ISO)
N-acetyl-L-cysteine  (ISO)
nitrates  (ISO)
Nutlin-3  (ISO)
omeprazole  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
testosterone  (ISO)
thapsigargin  (EXP,ISO)
thioacetamide  (EXP)
tolcapone  (EXP)
triphenyl phosphate  (ISO)
trovafloxacin  (EXP)
tunicamycin  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Cdc42 regulates microtubule-dependent Golgi positioning. Hehnly H, etal., Traffic. 2010 Aug;11(8):1067-78. doi: 10.1111/j.1600-0854.2010.01082.x. Epub 2010 May 26.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15978772   PMID:17360540   PMID:18504258   PMID:21499258   PMID:25002582   PMID:29437892   PMID:30053369  


Genomics

Comparative Map Data
Copg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,923,644 - 121,949,819 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4121,923,873 - 121,949,812 (+)EnsemblGRCr8
mRatBN7.24120,366,540 - 120,392,502 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,366,542 - 120,415,616 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4125,839,212 - 125,863,727 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,613,989 - 121,638,505 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,238,238 - 120,262,752 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,815,041 - 119,840,997 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,815,139 - 119,864,114 (+)Ensemblrn6Rnor6.0
Rnor_5.04185,062,623 - 185,088,579 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44122,109,613 - 122,134,049 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4109,326,188 - 109,350,625 (+)NCBICelera
Cytogenetic Map4q34NCBI
COPG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,249,606 - 129,277,773 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3129,249,576 - 129,278,065 (+)Ensemblhg38GRCh38
GRCh373128,968,449 - 128,996,616 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,451,143 - 130,479,306 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343130,451,150 - 130,479,312NCBI
Celera3127,399,234 - 127,427,322 (+)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3126,353,590 - 126,381,662 (+)NCBIHuRef
CHM1_13128,931,675 - 128,959,852 (+)NCBICHM1_1
T2T-CHM13v2.03131,994,406 - 132,022,572 (+)NCBIT2T-CHM13v2.0
Copg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,864,801 - 87,890,577 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl687,864,796 - 87,890,577 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38687,887,819 - 87,913,595 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,887,814 - 87,913,595 (+)Ensemblmm10GRCm38
MGSCv37687,837,934 - 87,863,589 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36687,853,581 - 87,879,236 (+)NCBIMGSCv36mm8
Celera689,824,999 - 89,850,681 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
Copg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542913,578,494 - 13,616,463 (+)Ensembl
ChiLan1.0NW_00495542913,582,676 - 13,615,801 (+)NCBIChiLan1.0ChiLan1.0
COPG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22127,185,345 - 127,213,547 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13127,190,069 - 127,218,271 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03126,310,558 - 126,338,726 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,664,856 - 133,693,633 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,664,856 - 133,694,849 (+)EnsemblpanPan2panpan1.1
COPG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1202,832,150 - 2,860,356 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl202,832,198 - 2,860,320 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha202,869,065 - 2,897,262 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0202,852,770 - 2,880,977 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl202,844,919 - 2,880,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1202,572,649 - 2,600,856 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0202,895,653 - 2,923,949 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0202,860,084 - 2,888,263 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Copg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,196,871 - 20,218,086 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936798238,571 - 260,083 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936798238,741 - 259,962 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COPG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,672,733 - 71,730,399 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11371,707,097 - 71,730,402 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,410,094 - 79,420,841 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COPG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12251,787,002 - 51,812,031 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2251,787,340 - 51,812,026 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041114,585,201 - 114,613,333 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Copg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624872299,625 - 320,974 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Copg1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1658,390,670 - 58,416,653 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Copg1
40 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:27
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000016137
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4117737142152833657Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478687630123687630Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4113634167149763391Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4121020385148834277Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 12 61 134 57 60 41 86 41 298 168 11 125 71 73 19 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016137   ⟹   ENSRNOP00000016137
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4121,923,962 - 121,948,737 (+)Ensembl
mRatBN7.2 Ensembl4120,366,647 - 120,391,392 (+)Ensembl
Rnor_6.0 Ensembl4119,815,246 - 119,839,683 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000057286   ⟹   ENSRNOP00000054105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4120,392,850 - 120,415,616 (+)Ensembl
Rnor_6.0 Ensembl4119,842,013 - 119,864,114 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083402   ⟹   ENSRNOP00000071817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4120,366,542 - 120,393,727 (+)Ensembl
Rnor_6.0 Ensembl4119,815,139 - 119,845,473 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101593   ⟹   ENSRNOP00000079638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4121,923,873 - 121,949,438 (+)Ensembl
mRatBN7.2 Ensembl4120,366,642 - 120,391,410 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108333   ⟹   ENSRNOP00000090408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4121,923,969 - 121,947,261 (+)Ensembl
mRatBN7.2 Ensembl4120,366,640 - 120,391,410 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110571   ⟹   ENSRNOP00000084887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4121,923,873 - 121,949,812 (+)Ensembl
mRatBN7.2 Ensembl4120,366,628 - 120,392,498 (+)Ensembl
RefSeq Acc Id: NM_001031822   ⟹   NP_001026992
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84121,923,962 - 121,949,819 (+)NCBI
mRatBN7.24120,366,639 - 120,392,498 (+)NCBI
Rnor_6.04119,815,246 - 119,839,683 (+)NCBI
Rnor_5.04185,062,623 - 185,088,579 (+)NCBI
RGSC_v3.44122,109,613 - 122,134,049 (+)RGD
Celera4109,326,188 - 109,350,625 (+)RGD
Sequence:
RefSeq Acc Id: XM_008763066   ⟹   XP_008761288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84121,923,644 - 121,948,731 (+)NCBI
mRatBN7.24120,366,540 - 120,392,502 (+)NCBI
Rnor_6.04119,815,041 - 119,840,997 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001026992 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761288 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI29075 (Get FASTA)   NCBI Sequence Viewer  
  BAE16997 (Get FASTA)   NCBI Sequence Viewer  
  BAE16998 (Get FASTA)   NCBI Sequence Viewer  
  EDL91297 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000079638
  ENSRNOP00000084887
GenBank Protein Q4AEF8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001026992   ⟸   NM_001031822
- UniProtKB: Q4AEF8 (UniProtKB/Swiss-Prot),   A6IB29 (UniProtKB/TrEMBL),   A0A8I5ZY43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761288   ⟸   XM_008763066
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZY43 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016137   ⟸   ENSRNOT00000016137
Ensembl Acc Id: ENSRNOP00000054105   ⟸   ENSRNOT00000057286
Ensembl Acc Id: ENSRNOP00000071817   ⟸   ENSRNOT00000083402
Ensembl Acc Id: ENSRNOP00000090408   ⟸   ENSRNOT00000108333
Ensembl Acc Id: ENSRNOP00000084887   ⟸   ENSRNOT00000110571
Ensembl Acc Id: ENSRNOP00000079638   ⟸   ENSRNOT00000101593
Protein Domains
Clathrin/coatomer adaptor adaptin-like N-terminal   Coatomer gamma subunit appendage Ig-like subdomain   Coatomer subunit gamma C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4AEF8-F1-model_v2 AlphaFold Q4AEF8 1-874 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693229
Promoter ID:EPDNEW_R3750
Type:initiation region
Name:Copg1_1
Description:coatomer protein complex, subunit gamma 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04119,815,140 - 119,815,200EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565292 AgrOrtholog
BioCyc Gene G2FUF-43845 BioCyc
Ensembl Genes ENSRNOG00000010474 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000101593 ENTREZGENE
  ENSRNOT00000110571 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot
  2.60.40.1480 UniProtKB/Swiss-Prot
  3.30.310.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7107382 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/Swiss-Prot
  ARM-type_fold UniProtKB/Swiss-Prot
  Clathrin/coatomer_adapt-like_N UniProtKB/Swiss-Prot
  Clathrin_app_Ig-like_sf UniProtKB/Swiss-Prot
  Coatomer/calthrin_app_sub_C UniProtKB/Swiss-Prot
  Coatomer_g_Cpla UniProtKB/Swiss-Prot
  Coatomer_gsu UniProtKB/Swiss-Prot
  Coatomer_gsu_app_Ig-like_dom UniProtKB/Swiss-Prot
  Coatomer_gsu_app_sf UniProtKB/Swiss-Prot
  TBP_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:297428 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156513 IMAGE-MGC_LOAD
NCBI Gene 297428 ENTREZGENE
PANTHER COATOMER SUBUNIT GAMMA-1 UniProtKB/Swiss-Prot
  PTHR10261 UniProtKB/Swiss-Prot
Pfam Adaptin_N UniProtKB/Swiss-Prot
  Coatomer_g_Cpla UniProtKB/Swiss-Prot
  COP-gamma_platf UniProtKB/Swiss-Prot
PhenoGen Copg1 PhenoGen
PIRSF Coatomer_gamma_subunit UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000010474 RatGTEx
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
  SSF49348 UniProtKB/Swiss-Prot
  SSF55711 UniProtKB/Swiss-Prot
UniProt A0A8I5ZY43 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9G6_RAT UniProtKB/TrEMBL
  A0A8I6G3J7_RAT UniProtKB/TrEMBL
  A0A8L2Q7S5_RAT UniProtKB/TrEMBL
  A6IB29 ENTREZGENE, UniProtKB/TrEMBL
  COPG1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Copg1  coat protein complex I subunit gamma 1  Copg1  COPI coat complex subunit gamma 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2019-11-11 Copg1  COPI coat complex subunit gamma 1  Copg1  coatomer protein complex, subunit gamma 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-16 Copg1  coatomer protein complex, subunit gamma 1  Copg  coatomer protein complex, subunit gamma  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 Copg  coatomer protein complex, subunit gamma      Symbol and Name status set to provisional 70820 PROVISIONAL