Sgip1 (SH3GL interacting endocytic adaptor 1) - Rat Genome Database

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Gene: Sgip1 (SH3GL interacting endocytic adaptor 1) Rattus norvegicus
Analyze
Symbol: Sgip1
Name: SH3GL interacting endocytic adaptor 1
RGD ID: 1564957
Description: Enables tubulin binding activity. Involved in several processes, including positive regulation of eating behavior; response to dietary excess; and response to starvation. Located in terminal bouton. Is active in presynapse. Orthologous to human SGIP1 (SH3GL interacting endocytic adaptor 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Endophilin-3-interacting protein; LOC313413; RGD1564957; SH3-containing GRB2-like protein 3-interacting protein 1; SH3-domain GRB2-like (endophilin) interacting protein 1; similar to RIKEN cDNA 3110007P09
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85122,755,216 - 122,963,677 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5122,765,890 - 122,963,659 (+)EnsemblGRCr8
mRatBN7.25117,536,752 - 117,734,593 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5117,537,746 - 117,734,575 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5120,170,652 - 120,367,633 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05121,895,990 - 122,092,972 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05121,947,262 - 122,144,254 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05122,300,415 - 122,498,478 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5122,390,522 - 122,491,203 (+)Ensemblrn6Rnor6.0
Rnor_5.05126,167,768 - 126,365,804 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45123,696,703 - 123,897,989 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5116,112,672 - 116,308,424 (+)NCBICelera
Cytogenetic Map5q33NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
AP-2 adaptor complex  (ISO,ISS)
clathrin-coated pit  (IEA,ISO)
clathrin-coated vesicle  (ISO,ISS)
cytoplasm  (ISO,ISS)
plasma membrane  (ISO,ISS)
presynapse  (IDA,IMP,ISO)
terminal bouton  (HDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. SGIP1 alters internalization and modulates signaling of activated cannabinoid receptor 1 in a biased manner. Hájková A, etal., Neuropharmacology. 2016 Aug;107:201-214. doi: 10.1016/j.neuropharm.2016.03.008. Epub 2016 Mar 9.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Src homology 3-domain growth factor receptor-bound 2-like (endophilin) interacting protein 1, a novel neuronal protein that regulates energy balance. Trevaskis J, etal., Endocrinology. 2005 Sep;146(9):3757-64. Epub 2005 May 26.
5. SGIP1alpha is an endocytic protein that directly interacts with phospholipids and Eps15. Uezu A, etal., J Biol Chem. 2007 Sep 7;282(36):26481-9. Epub 2007 Jul 10.
6. Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins. Wilhelm BG, etal., Science. 2014 May 30;344(6187):1023-8. doi: 10.1126/science.1252884.
Additional References at PubMed
PMID:15057822   PMID:20946875   PMID:22167186   PMID:29476059  


Genomics

Comparative Map Data
Sgip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85122,755,216 - 122,963,677 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5122,765,890 - 122,963,659 (+)EnsemblGRCr8
mRatBN7.25117,536,752 - 117,734,593 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5117,537,746 - 117,734,575 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5120,170,652 - 120,367,633 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05121,895,990 - 122,092,972 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05121,947,262 - 122,144,254 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05122,300,415 - 122,498,478 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5122,390,522 - 122,491,203 (+)Ensemblrn6Rnor6.0
Rnor_5.05126,167,768 - 126,365,804 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45123,696,703 - 123,897,989 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5116,112,672 - 116,308,424 (+)NCBICelera
Cytogenetic Map5q33NCBI
SGIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38166,533,361 - 66,751,139 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl166,533,267 - 66,751,139 (+)Ensemblhg38GRCh38
GRCh37166,999,044 - 67,216,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36166,772,413 - 66,983,356 (+)NCBIBuild 36Build 36hg18NCBI36
Celera165,290,173 - 65,500,737 (+)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef165,109,074 - 65,319,047 (+)NCBIHuRef
CHM1_1167,115,379 - 67,326,126 (+)NCBICHM1_1
T2T-CHM13v2.0166,410,946 - 66,628,673 (+)NCBIT2T-CHM13v2.0
Sgip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394102,616,351 - 102,834,623 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4102,598,494 - 102,830,825 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384102,741,302 - 102,977,426 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4102,741,297 - 102,973,628 (+)Ensemblmm10GRCm38
MGSCv374102,432,968 - 102,643,782 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364102,258,295 - 102,469,109 (+)NCBIMGSCv36mm8
Celera4101,125,168 - 101,335,919 (+)NCBICelera
Cytogenetic Map4C6NCBI
cM Map447.09NCBI
Sgip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542324,157,368 - 24,353,206 (-)Ensembl
ChiLan1.0NW_00495542324,155,401 - 24,353,166 (-)NCBIChiLan1.0ChiLan1.0
SGIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21160,115,885 - 160,327,220 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,270,035 - 159,486,941 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0165,782,856 - 65,999,721 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1167,668,456 - 67,885,094 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl167,669,222 - 67,877,073 (+)EnsemblpanPan2panpan1.1
SGIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1543,741,507 - 43,944,289 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl543,746,506 - 43,943,414 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha543,865,785 - 44,067,468 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0543,927,271 - 44,132,033 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl543,931,380 - 44,131,599 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1543,893,104 - 44,097,647 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0543,839,137 - 44,043,106 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0544,079,263 - 44,281,189 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sgip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505879,473,546 - 79,676,652 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365914,817,184 - 5,016,140 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365914,815,222 - 5,015,250 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6145,822,269 - 146,052,526 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16145,815,658 - 146,051,621 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SGIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12066,349,378 - 66,565,216 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2066,357,440 - 66,473,483 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603351,029,998 - 51,245,493 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474228,247,127 - 28,439,482 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474228,245,140 - 28,439,705 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sgip1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1151,594,788 - 51,796,212 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sgip1
1873 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:529
Count of miRNA genes:139
Interacting mature miRNAs:158
Transcripts:ENSRNOT00000008712, ENSRNOT00000009030, ENSRNOT00000043261, ENSRNOT00000044184, ENSRNOT00000046609, ENSRNOT00000050999, ENSRNOT00000064567
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5102105698152749382Rat
2303586Gluco52Glucose level QTL 522blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)5100826632145826632Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)584630798129630798Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)584630798129630798Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112142946157142946Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112142946157142946Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5110770739155770739Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112142946157142946Rat
1582212Livw2Liver weight QTL 23.50.0004liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)5104018576124314782Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)592583776137583776Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)598972960143972960Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
2303618Vencon1Ventilatory control QTL 13.8respiration trait (VT:0001943)oxygen consumption (CMO:0002169)5100826632145826632Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111236572156236572Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584630798129630798Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)594034903139034903Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)595062526133270832Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112142946157142946Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112142946157142946Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
1600362Mcs19Mammary carcinoma susceptibility QTL 192.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)582032155127032155Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)589369373134369373Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)597492524133270832Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)592881678137881678Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)595062526133270832Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5104262817153890625Rat

Markers in Region
D5Got245  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,534,427 - 117,534,531 (+)MAPPERmRatBN7.2
Rnor_6.05122,298,083 - 122,298,186NCBIRnor6.0
Rnor_5.05126,165,429 - 126,165,532UniSTSRnor5.0
RGSC_v3.45123,705,085 - 123,705,188UniSTSRGSC3.4
Celera5116,110,340 - 116,110,443UniSTS
Cytogenetic Map5q34UniSTS
RH132380  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,661,068 - 117,661,253 (+)MAPPERmRatBN7.2
Rnor_6.05122,424,969 - 122,425,153NCBIRnor6.0
Rnor_5.05126,292,315 - 126,292,499UniSTSRnor5.0
RGSC_v3.45123,831,710 - 123,831,894UniSTSRGSC3.4
Celera5116,235,090 - 116,235,274UniSTS
Cytogenetic Map5q34UniSTS
BF386054  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,719,059 - 117,719,238 (+)MAPPERmRatBN7.2
Rnor_6.05122,482,950 - 122,483,128NCBIRnor6.0
Rnor_5.05126,350,276 - 126,350,454UniSTSRnor5.0
RGSC_v3.45123,889,736 - 123,889,914UniSTSRGSC3.4
Celera5116,292,896 - 116,293,074UniSTS
RH 3.4 Map5787.2UniSTS
Cytogenetic Map5q34UniSTS
AW531434  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,726,101 - 117,726,283 (+)MAPPERmRatBN7.2
Rnor_6.05122,489,992 - 122,490,173NCBIRnor6.0
Rnor_5.05126,357,318 - 126,357,499UniSTSRnor5.0
RGSC_v3.45123,896,778 - 123,896,959UniSTSRGSC3.4
Celera5116,299,938 - 116,300,119UniSTS
RH 3.4 Map5691.1UniSTS
Cytogenetic Map5q34UniSTS
RH137908  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,728,810 - 117,728,942 (+)MAPPERmRatBN7.2
Rnor_6.05122,492,701 - 122,492,832NCBIRnor6.0
Rnor_5.05126,360,027 - 126,360,158UniSTSRnor5.0
RGSC_v3.45123,899,487 - 123,899,618UniSTSRGSC3.4
Celera5116,302,647 - 116,302,778UniSTS
RH 3.4 Map5690.9UniSTS
Cytogenetic Map5q34UniSTS
RH138346  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,542,119 - 117,542,301 (+)MAPPERmRatBN7.2
Rnor_6.05122,305,761 - 122,305,942NCBIRnor6.0
Rnor_5.05126,173,107 - 126,173,288UniSTSRnor5.0
RGSC_v3.45123,712,763 - 123,712,944UniSTSRGSC3.4
Celera5116,118,018 - 116,118,199UniSTS
RH 3.4 Map5786.8UniSTS
Cytogenetic Map5q34UniSTS
RH138745  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,644,101 - 117,644,293 (+)MAPPERmRatBN7.2
Rnor_6.05122,408,002 - 122,408,193NCBIRnor6.0
Rnor_5.05126,275,348 - 126,275,539UniSTSRnor5.0
RGSC_v3.45123,814,743 - 123,814,934UniSTSRGSC3.4
Celera5116,218,189 - 116,218,380UniSTS
RH 3.4 Map5786.5UniSTS
Cytogenetic Map5q34UniSTS
BF390213  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,729,730 - 117,729,881 (+)MAPPERmRatBN7.2
Rnor_6.05122,493,621 - 122,493,771NCBIRnor6.0
Rnor_5.05126,360,947 - 126,361,097UniSTSRnor5.0
RGSC_v3.45123,900,407 - 123,900,557UniSTSRGSC3.4
Celera5116,303,567 - 116,303,717UniSTS
RH 3.4 Map5719.5UniSTS
Cytogenetic Map5q34UniSTS
RH124566  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25117,703,291 - 117,703,393 (+)MAPPERmRatBN7.2
Rnor_6.05122,467,187 - 122,467,288NCBIRnor6.0
Rnor_5.05126,334,533 - 126,334,634UniSTSRnor5.0
RGSC_v3.45123,873,928 - 123,874,029UniSTSRGSC3.4
Celera5116,277,198 - 116,277,299UniSTS
Cytogenetic Map5q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 12 63 161 85 84 53 55 53 6 301 151 11 140 74 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001376936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000064567   ⟹   ENSRNOP00000059906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5122,855,713 - 122,955,089 (+)Ensembl
mRatBN7.2 Ensembl5117,626,621 - 117,726,146 (+)Ensembl
Rnor_6.0 Ensembl5122,390,522 - 122,491,203 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095642   ⟹   ENSRNOP00000082178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5122,865,276 - 122,956,972 (+)Ensembl
mRatBN7.2 Ensembl5117,537,746 - 117,734,575 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100702   ⟹   ENSRNOP00000085071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5122,855,722 - 122,963,659 (+)Ensembl
mRatBN7.2 Ensembl5117,537,746 - 117,734,575 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102723   ⟹   ENSRNOP00000090743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5122,855,075 - 122,955,089 (+)Ensembl
mRatBN7.2 Ensembl5117,625,983 - 117,726,146 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106500   ⟹   ENSRNOP00000096859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5122,765,890 - 122,958,313 (+)Ensembl
mRatBN7.2 Ensembl5117,537,746 - 117,734,575 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110115   ⟹   ENSRNOP00000095822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5122,765,890 - 122,958,313 (+)Ensembl
mRatBN7.2 Ensembl5117,537,746 - 117,734,575 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129393   ⟹   ENSRNOP00000106924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5122,765,890 - 122,958,313 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000143443   ⟹   ENSRNOP00000109027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5122,765,890 - 122,958,313 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000169322   ⟹   ENSRNOP00000101313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5122,765,890 - 122,958,313 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000171153   ⟹   ENSRNOP00000106186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5122,765,890 - 122,958,313 (+)Ensembl
RefSeq Acc Id: NM_001376936   ⟹   NP_001363865
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,853 - 122,963,672 (+)NCBI
mRatBN7.25117,537,746 - 117,734,588 (+)NCBI
RefSeq Acc Id: XM_039109937   ⟹   XP_038965865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
mRatBN7.25117,537,737 - 117,734,593 (+)NCBI
RefSeq Acc Id: XM_039109938   ⟹   XP_038965866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
mRatBN7.25117,537,737 - 117,734,593 (+)NCBI
RefSeq Acc Id: XM_039109940   ⟹   XP_038965868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
mRatBN7.25117,537,737 - 117,734,593 (+)NCBI
RefSeq Acc Id: XM_063287653   ⟹   XP_063143723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,765,845 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287654   ⟹   XP_063143724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,499 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287655   ⟹   XP_063143725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287656   ⟹   XP_063143726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287657   ⟹   XP_063143727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287658   ⟹   XP_063143728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287659   ⟹   XP_063143729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,755,216 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287661   ⟹   XP_063143731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,765,845 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287662   ⟹   XP_063143732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287663   ⟹   XP_063143733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,767,189 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287664   ⟹   XP_063143734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287665   ⟹   XP_063143735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,755,216 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287666   ⟹   XP_063143736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287667   ⟹   XP_063143737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,767,189 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287668   ⟹   XP_063143738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,864,638 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287669   ⟹   XP_063143739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,767,189 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287670   ⟹   XP_063143740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,767,189 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287671   ⟹   XP_063143741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,767,189 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287672   ⟹   XP_063143742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287673   ⟹   XP_063143743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287674   ⟹   XP_063143744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,755,216 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287675   ⟹   XP_063143745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,767,189 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287676   ⟹   XP_063143746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,942,592 (+)NCBI
RefSeq Acc Id: XM_063287677   ⟹   XP_063143747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,942,592 (+)NCBI
RefSeq Acc Id: XM_063287678   ⟹   XP_063143748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,755,216 - 122,942,592 (+)NCBI
RefSeq Acc Id: XM_063287679   ⟹   XP_063143749
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,926,424 (+)NCBI
RefSeq Acc Id: XM_063287680   ⟹   XP_063143750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,755,216 - 122,942,592 (+)NCBI
RefSeq Acc Id: XM_063287681   ⟹   XP_063143751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,924,148 (+)NCBI
RefSeq Acc Id: XM_063287682   ⟹   XP_063143752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,755,216 - 122,924,148 (+)NCBI
RefSeq Acc Id: XM_063287684   ⟹   XP_063143754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,755,216 - 122,924,148 (+)NCBI
RefSeq Acc Id: XM_063287685   ⟹   XP_063143755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287686   ⟹   XP_063143756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287687   ⟹   XP_063143757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287688   ⟹   XP_063143758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
RefSeq Acc Id: XM_063287689   ⟹   XP_063143759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85122,766,824 - 122,963,677 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001363865 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965865 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965866 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965868 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143723 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143724 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143725 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143726 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143727 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143728 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143729 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143731 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143732 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143733 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143734 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143735 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143736 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143737 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143738 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143739 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143740 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143741 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143742 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143743 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143744 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143745 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143746 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143747 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143748 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143749 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143750 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143751 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143752 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143754 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143755 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143756 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143757 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143758 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143759 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL97855 (Get FASTA)   NCBI Sequence Viewer  
  EDL97856 (Get FASTA)   NCBI Sequence Viewer  
  EDL97857 (Get FASTA)   NCBI Sequence Viewer  
  EDL97858 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000059906
  ENSRNOP00000082178
  ENSRNOP00000085071
  ENSRNOP00000095822
  ENSRNOP00000096859
  ENSRNOP00000096859.1
  ENSRNOP00000101313
  ENSRNOP00000106186
  ENSRNOP00000106924
  ENSRNOP00000109027
GenBank Protein P0DJJ3 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000059906   ⟸   ENSRNOT00000064567
RefSeq Acc Id: XP_038965865   ⟸   XM_039109937
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038965866   ⟸   XM_039109938
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038965868   ⟸   XM_039109940
- Peptide Label: isoform X20
RefSeq Acc Id: NP_001363865   ⟸   NM_001376936
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000095822   ⟸   ENSRNOT00000110115
Ensembl Acc Id: ENSRNOP00000096859   ⟸   ENSRNOT00000106500
Ensembl Acc Id: ENSRNOP00000085071   ⟸   ENSRNOT00000100702
Ensembl Acc Id: ENSRNOP00000082178   ⟸   ENSRNOT00000095642
Ensembl Acc Id: ENSRNOP00000090743   ⟸   ENSRNOT00000102723
RefSeq Acc Id: XP_063143729   ⟸   XM_063287659
- Peptide Label: isoform X6
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL),   A0A8I6GCF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143744   ⟸   XM_063287674
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063143735   ⟸   XM_063287665
- Peptide Label: isoform X10
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143748   ⟸   XM_063287678
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063143750   ⟸   XM_063287680
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063143752   ⟸   XM_063287682
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063143754   ⟸   XM_063287684
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063143723   ⟸   XM_063287653
- Peptide Label: isoform X1
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143731   ⟸   XM_063287661
- Peptide Label: isoform X6
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL),   A0A8I6GCF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143724   ⟸   XM_063287654
- Peptide Label: isoform X1
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143727   ⟸   XM_063287657
- Peptide Label: isoform X4
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143726   ⟸   XM_063287656
- Peptide Label: isoform X3
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143728   ⟸   XM_063287658
- Peptide Label: isoform X5
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143742   ⟸   XM_063287672
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063143743   ⟸   XM_063287673
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063143725   ⟸   XM_063287655
- Peptide Label: isoform X2
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143756   ⟸   XM_063287686
- Peptide Label: isoform X31
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143732   ⟸   XM_063287662
- Peptide Label: isoform X7
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143734   ⟸   XM_063287664
- Peptide Label: isoform X9
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143758   ⟸   XM_063287688
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063143759   ⟸   XM_063287689
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063143755   ⟸   XM_063287685
- Peptide Label: isoform X30
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143736   ⟸   XM_063287666
- Peptide Label: isoform X10
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143757   ⟸   XM_063287687
- Peptide Label: isoform X32
- UniProtKB: F1M1Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143746   ⟸   XM_063287676
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063143747   ⟸   XM_063287677
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063143749   ⟸   XM_063287679
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063143751   ⟸   XM_063287681
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063143733   ⟸   XM_063287663
- Peptide Label: isoform X8
- UniProtKB: A0A8I6ACG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143737   ⟸   XM_063287667
- Peptide Label: isoform X11
- UniProtKB: A0A8I6ACG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143745   ⟸   XM_063287675
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063143739   ⟸   XM_063287669
- Peptide Label: isoform X12
- UniProtKB: A0A8I6ACG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143740   ⟸   XM_063287670
- Peptide Label: isoform X13
- UniProtKB: A0A8I6ACG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143741   ⟸   XM_063287671
- Peptide Label: isoform X14
- UniProtKB: A0A8I6ACG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143738   ⟸   XM_063287668
- Peptide Label: isoform X11
- UniProtKB: A0A8I6ACG4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000109027   ⟸   ENSRNOT00000143443
Ensembl Acc Id: ENSRNOP00000106924   ⟸   ENSRNOT00000129393
Ensembl Acc Id: ENSRNOP00000106186   ⟸   ENSRNOT00000171153
Ensembl Acc Id: ENSRNOP00000101313   ⟸   ENSRNOT00000169322
Protein Domains
MHD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P0DJJ3-F1-model_v2 AlphaFold P0DJJ3 1-827 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564957 AgrOrtholog
BioCyc Gene G2FUF-40513 BioCyc
Ensembl Genes ENSRNOG00000006357 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000064567 ENTREZGENE
  ENSRNOT00000095642 ENTREZGENE
  ENSRNOT00000100702 ENTREZGENE
  ENSRNOT00000106500 ENTREZGENE
  ENSRNOT00000106500.1 UniProtKB/Swiss-Prot
  ENSRNOT00000110115 ENTREZGENE
  ENSRNOT00000129393 ENTREZGENE
  ENSRNOT00000143443 ENTREZGENE
  ENSRNOT00000169322 ENTREZGENE
  ENSRNOT00000171153 ENTREZGENE
Gene3D-CATH Mu homology domain, subdomain B UniProtKB/Swiss-Prot
InterPro AP2_Mu_C_sf UniProtKB/Swiss-Prot
  MHD UniProtKB/Swiss-Prot
  Muniscin_C UniProtKB/Swiss-Prot
  SGIP1_MHD UniProtKB/Swiss-Prot
NCBI Gene 313413 ENTREZGENE
PANTHER F-BAR DOMAIN ONLY PROTEIN 2 UniProtKB/Swiss-Prot
  PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot
Pfam muHD UniProtKB/Swiss-Prot
PhenoGen Sgip1 PhenoGen
PROSITE MHD UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000006357 RatGTEx
Superfamily-SCOP SSF49447 UniProtKB/Swiss-Prot
UniProt A0A8I5ZUM5_RAT UniProtKB/TrEMBL
  A0A8I6ACG4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AMB7_RAT UniProtKB/TrEMBL
  A0A8I6GCF4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L962_RAT UniProtKB/TrEMBL
  A0ABK0LE16_RAT UniProtKB/TrEMBL
  A0ABK0LIK0_RAT UniProtKB/TrEMBL
  A0ABK0LMG1_RAT UniProtKB/TrEMBL
  F1M1Y0 ENTREZGENE, UniProtKB/TrEMBL
  P0DJJ3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-05 Sgip1  SH3GL interacting endocytic adaptor 1  Sgip1  SH3-domain GRB2-like (endophilin) interacting protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Sgip1  SH3-domain GRB2-like (endophilin) interacting protein 1  RGD1564957_predicted  similar to RIKEN cDNA 3110007P09 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564957_predicted  similar to RIKEN cDNA 3110007P09 (predicted)  LOC313413  similar to RIKEN cDNA 3110007P09  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC313413  similar to RIKEN cDNA 3110007P09      Symbol and Name status set to provisional 70820 PROVISIONAL