Cpeb3 (cytoplasmic polyadenylation element binding protein 3) - Rat Genome Database

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Gene: Cpeb3 (cytoplasmic polyadenylation element binding protein 3) Rattus norvegicus
Analyze
Symbol: Cpeb3
Name: cytoplasmic polyadenylation element binding protein 3
RGD ID: 1564670
Description: Predicted to enable several functions, including RNA binding activity; mRNA regulatory element binding translation repressor activity; and translation factor activity, RNA binding. Predicted to be involved in several processes, including long-term memory; positive regulation of long-term synaptic potentiation; and regulation of gene expression. Predicted to act upstream of or within negative regulation of translation. Located in dendrite. Is active in postsynapse. Orthologous to human CPEB3 (cytoplasmic polyadenylation element binding protein 3); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cytoplasmic polyadenylation element-binding protein 3; LOC309510; RGD1564670; similar to mKIAA0940 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81244,161,690 - 244,343,765 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1244,161,690 - 244,343,561 (-)EnsemblGRCr8
mRatBN7.21234,749,138 - 234,931,219 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,751,733 - 234,931,560 (-)EnsemblmRatBN7.2
Rnor_6.01255,660,165 - 255,842,671 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1255,665,238 - 255,815,733 (-)Ensemblrn6Rnor6.0
Rnor_5.01263,136,022 - 263,287,546 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41241,298,277 - 241,444,908 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1231,841,304 - 232,022,582 (-)NCBICelera
Cytogenetic Map1q53NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
17beta-estradiol 3-benzoate  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clothianidin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
glyphosate  (ISO)
hydrogen cyanide  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
levonorgestrel  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
potassium cyanide  (ISO)
potassium dichromate  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone  (EXP,ISO)
testosterone undecanoate  (ISO)
thimerosal  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
apical dendrite  (ISO)
CCR4-NOT complex  (IEA,ISO)
cytoplasm  (IBA,IEA,ISO)
dendrite  (IDA,ISO)
glutamatergic synapse  (ISO)
neuron projection  (IBA,IEA,ISO)
nucleus  (IBA,IEA,ISO)
postsynapse  (IDA,IEP,IMP)
synapse  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. CPEB3 and CPEB4 in neurons: analysis of RNA-binding specificity and translational control of AMPA receptor GluR2 mRNA. Huang YS, etal., EMBO J. 2006 Oct 18;25(20):4865-76. doi: 10.1038/sj.emboj.7601322. Epub 2006 Oct 5.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Calpain 2 activated through N-methyl-D-aspartic acid receptor signaling cleaves CPEB3 and abrogates CPEB3-repressed translation in neurons. Wang CF and Huang YS, Mol Cell Biol. 2012 Aug;32(16):3321-32. doi: 10.1128/MCB.00296-12. Epub 2012 Jun 18.
Additional References at PubMed
PMID:20639532   PMID:20937770   PMID:21336257   PMID:22153079   PMID:22157746   PMID:22658674   PMID:22681889   PMID:22730302   PMID:24155305   PMID:26074003   PMID:26074071   PMID:26915043  


Genomics

Comparative Map Data
Cpeb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81244,161,690 - 244,343,765 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1244,161,690 - 244,343,561 (-)EnsemblGRCr8
mRatBN7.21234,749,138 - 234,931,219 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,751,733 - 234,931,560 (-)EnsemblmRatBN7.2
Rnor_6.01255,660,165 - 255,842,671 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1255,665,238 - 255,815,733 (-)Ensemblrn6Rnor6.0
Rnor_5.01263,136,022 - 263,287,546 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41241,298,277 - 241,444,908 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1231,841,304 - 232,022,582 (-)NCBICelera
Cytogenetic Map1q53NCBI
CPEB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381092,046,692 - 92,291,233 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1092,046,692 - 92,291,628 (-)Ensemblhg38GRCh38
GRCh371093,806,449 - 94,050,835 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361093,798,379 - 94,040,824 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341093,798,378 - 94,040,824NCBI
Celera1087,552,931 - 87,795,403 (-)NCBICelera
Cytogenetic Map10q23.32NCBI
HuRef1087,437,158 - 87,679,427 (-)NCBIHuRef
CHM1_11094,090,164 - 94,332,641 (-)NCBICHM1_1
T2T-CHM13v2.01092,929,099 - 93,173,600 (-)NCBIT2T-CHM13v2.0
Cpeb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391936,996,742 - 37,185,018 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1936,998,691 - 37,186,000 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381937,019,341 - 37,207,620 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1937,021,291 - 37,208,601 (-)Ensemblmm10GRCm38
MGSCv371937,095,781 - 37,281,783 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361937,086,435 - 37,272,437 (-)NCBIMGSCv36mm8
Celera1937,797,394 - 37,982,920 (-)NCBICelera
Cytogenetic Map19C2NCBI
cM Map1932.08NCBI
Cpeb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554251,057,575 - 1,224,300 (+)Ensembl
ChiLan1.0NW_0049554251,032,446 - 1,224,300 (+)NCBIChiLan1.0ChiLan1.0
CPEB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28104,085,024 - 104,329,699 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110104,090,340 - 104,334,928 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01088,794,186 - 89,038,808 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11092,314,573 - 92,505,160 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1092,320,240 - 92,506,089 (-)EnsemblpanPan2panpan1.1
CPEB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1286,523,894 - 6,724,010 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl286,529,212 - 6,723,454 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha286,699,976 - 6,899,667 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0286,778,232 - 6,978,042 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl286,782,197 - 6,944,731 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1286,504,095 - 6,703,882 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0286,537,767 - 6,737,510 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0286,702,474 - 6,902,192 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cpeb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721340,834,279 - 40,983,848 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366012,470,036 - 2,610,942 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366012,470,021 - 2,616,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPEB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14103,675,175 - 103,871,227 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.114103,675,164 - 103,871,245 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214113,188,346 - 113,384,008 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPEB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1985,325,768 - 85,569,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl985,331,466 - 85,525,688 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604846,060,930 - 46,303,193 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpeb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247373,355,360 - 3,542,731 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247373,352,064 - 3,570,317 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cpeb3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1236,624,856 - 36,801,987 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cpeb3
1235 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:75
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000047387, ENSRNOT00000067976
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1207243873252243873Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1210980612255980612Rat
61455Niddm7Non-insulin dependent diabetes mellitus QTL 75.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1223964326248681945Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1226175591270518180Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1205233991267096252Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1218829748263829748Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1210980612255980612Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1237995023269633915Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1233480549270108840Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1200449456256003563Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1234540191270518180Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1233480549270108840Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1210980612255980612Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1223134011262090599Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1210980612255980612Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1207243873252243873Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
2314011Gluco56Glucose level QTL 56blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1209203273254203273Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1202543537247543537Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1225108840270108840Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1228180370266453608Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1205674651250674651Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1207243873252243873Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1224633915269633915Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1232312773270518180Rat
2316896Gluco57Glucose level QTL 577.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1238398865255849249Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1212738576257738576Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1194786607262083703Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1188241285250779312Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1208798288253798288Rat
61400Niddm1Non-insulin dependent diabetes mellitus QTL 111blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1228180243255849249Rat
61403Niddm4Non-insulin dependent diabetes mellitus QTL 4blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1201464383246464383Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1203675682248675682Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1205674651250674651Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1210980612255980612Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1210980612255980612Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1233204160270518180Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1207099883252099883Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1241569529269633915Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1210980612255980612Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1243953669270518180Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1226175591270518180Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233349180270518180Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1210980612255980612Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1228174566270518180Rat

Markers in Region
D1Rat118  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21234,846,351 - 234,846,526 (+)MAPPERmRatBN7.2
Rnor_6.01255,757,870 - 255,758,044NCBIRnor6.0
RGSC_v3.41241,390,117 - 241,390,291UniSTSRGSC3.4
RGSC_v3.41241,390,116 - 241,390,291RGDRGSC3.4
Celera1231,937,798 - 231,937,972UniSTS
RGSC_v3.11241,578,167 - 241,578,341RGD
RH 3.4 Map11581.0RGD
RH 3.4 Map11581.0UniSTS
FHH x ACI Map1125.8199RGD
FHH x ACI Map1125.8199UniSTS
Cytogenetic Map1q53UniSTS
RH137295  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21234,751,027 - 234,751,244 (+)MAPPERmRatBN7.2
Rnor_6.01255,662,055 - 255,662,271NCBIRnor6.0
Rnor_5.01263,137,912 - 263,138,128UniSTSRnor5.0
RGSC_v3.41241,295,012 - 241,295,228UniSTSRGSC3.4
Celera1231,843,194 - 231,843,410UniSTS
RH 3.4 Map11581.8UniSTS
Cytogenetic Map1q53UniSTS
PMC170964P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21234,900,509 - 234,900,845 (+)MAPPERmRatBN7.2
Rnor_6.01255,812,019 - 255,812,354NCBIRnor6.0
Rnor_5.01263,286,909 - 263,287,244UniSTSRnor5.0
RGSC_v3.41241,444,261 - 241,444,596UniSTSRGSC3.4
Celera1231,991,930 - 231,992,265UniSTS
Cytogenetic Map1q53UniSTS
RH143371  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21234,752,351 - 234,752,479 (+)MAPPERmRatBN7.2
Rnor_6.01255,663,379 - 255,663,506NCBIRnor6.0
Rnor_5.01263,139,236 - 263,139,363UniSTSRnor5.0
RGSC_v3.41241,296,336 - 241,296,463UniSTSRGSC3.4
Celera1231,844,518 - 231,844,645UniSTS
RH 3.4 Map11580.5UniSTS
Cytogenetic Map1q53UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 90 59 6 354 190 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC094246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC103056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000047387   ⟹   ENSRNOP00000040393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1244,161,690 - 244,316,764 (-)Ensembl
mRatBN7.2 Ensembl1234,751,733 - 234,904,232 (-)Ensembl
Rnor_6.0 Ensembl1255,665,238 - 255,815,733 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099970   ⟹   ENSRNOP00000076393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1244,161,690 - 244,343,561 (-)Ensembl
mRatBN7.2 Ensembl1234,751,733 - 234,931,560 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114370   ⟹   ENSRNOP00000082858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1244,161,690 - 244,343,561 (-)Ensembl
mRatBN7.2 Ensembl1234,751,733 - 234,931,560 (-)Ensembl
RefSeq Acc Id: NM_001419824   ⟹   NP_001406753
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,343,561 (-)NCBI
mRatBN7.21234,749,138 - 234,931,024 (-)NCBI
RefSeq Acc Id: NM_001419825   ⟹   NP_001406754
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,343,561 (-)NCBI
mRatBN7.21234,749,138 - 234,931,024 (-)NCBI
RefSeq Acc Id: XM_008760379   ⟹   XP_008758601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,317,912 (-)NCBI
mRatBN7.21234,749,138 - 234,905,168 (-)NCBI
Rnor_6.01255,660,165 - 255,816,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760380   ⟹   XP_008758602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,317,912 (-)NCBI
mRatBN7.21234,749,138 - 234,905,167 (-)NCBI
Rnor_6.01255,660,165 - 255,816,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590344   ⟹   XP_017445833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,320,226 (-)NCBI
mRatBN7.21234,749,138 - 234,905,169 (-)NCBI
Rnor_6.01255,660,165 - 255,816,708 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590345   ⟹   XP_017445834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,320,220 (-)NCBI
mRatBN7.21234,749,138 - 234,905,170 (-)NCBI
Rnor_6.01255,660,165 - 255,816,707 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590347   ⟹   XP_017445836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,314,572 (-)NCBI
mRatBN7.21234,749,138 - 234,902,709 (-)NCBI
Rnor_6.01255,660,165 - 255,812,873 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590348   ⟹   XP_017445837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,343,540 (-)NCBI
mRatBN7.21234,749,138 - 234,930,928 (-)NCBI
Rnor_6.01255,660,165 - 255,842,589 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590350   ⟹   XP_017445839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,343,765 (-)NCBI
mRatBN7.21234,749,138 - 234,931,219 (-)NCBI
Rnor_6.01255,660,165 - 255,842,671 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590351   ⟹   XP_017445840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,313,657 (-)NCBI
mRatBN7.21234,749,138 - 234,901,211 (-)NCBI
Rnor_6.01255,660,165 - 255,812,747 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590352   ⟹   XP_017445841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,186,600 - 244,320,487 (-)NCBI
mRatBN7.21234,774,050 - 234,905,204 (-)NCBI
Rnor_6.01255,685,120 - 255,816,710 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039101407   ⟹   XP_038957335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,169,723 - 244,320,348 (-)NCBI
mRatBN7.21234,773,681 - 234,905,184 (-)NCBI
RefSeq Acc Id: XM_063265169   ⟹   XP_063121239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,343,603 (-)NCBI
RefSeq Acc Id: XM_063265176   ⟹   XP_063121246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,343,570 (-)NCBI
RefSeq Acc Id: XM_063265178   ⟹   XP_063121248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,161,690 - 244,343,558 (-)NCBI
RefSeq Acc Id: XP_008758602   ⟸   XM_008760380
- Peptide Label: isoform X4
- UniProtKB: A6I161 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758601   ⟸   XM_008760379
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017445839   ⟸   XM_017590350
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GA10 (UniProtKB/TrEMBL),   A6I161 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445837   ⟸   XM_017590348
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GA10 (UniProtKB/TrEMBL),   A6I161 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445833   ⟸   XM_017590344
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017445834   ⟸   XM_017590345
- Peptide Label: isoform X3
- UniProtKB: D4AD99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445836   ⟸   XM_017590347
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GA10 (UniProtKB/TrEMBL),   A6I161 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445840   ⟸   XM_017590351
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GA10 (UniProtKB/TrEMBL),   A6I161 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445841   ⟸   XM_017590352
- Peptide Label: isoform X9
- Sequence:
Ensembl Acc Id: ENSRNOP00000040393   ⟸   ENSRNOT00000047387
RefSeq Acc Id: XP_038957335   ⟸   XM_039101407
- Peptide Label: isoform X7
Ensembl Acc Id: ENSRNOP00000076393   ⟸   ENSRNOT00000099970
Ensembl Acc Id: ENSRNOP00000082858   ⟸   ENSRNOT00000114370
RefSeq Acc Id: NP_001406754   ⟸   NM_001419825
- UniProtKB: A6I161 (UniProtKB/TrEMBL),   A0A8I6GA10 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406753   ⟸   NM_001419824
- UniProtKB: A6I161 (UniProtKB/TrEMBL),   A0A8I6GA10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121239   ⟸   XM_063265169
- Peptide Label: isoform X6
- UniProtKB: A6I161 (UniProtKB/TrEMBL),   A0A8I5Y6H1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121246   ⟸   XM_063265176
- Peptide Label: isoform X8
- UniProtKB: A6I161 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121248   ⟸   XM_063265178
- Peptide Label: isoform X8
- UniProtKB: A6I161 (UniProtKB/TrEMBL)
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AD99-F1-model_v2 AlphaFold D4AD99 1-756 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690890
Promoter ID:EPDNEW_R1399
Type:single initiation site
Name:AC103056_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01255,801,681 - 255,801,741EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564670 AgrOrtholog
BioCyc Gene G2FUF-55811 BioCyc
Ensembl Genes ENSRNOG00000020689 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047387 ENTREZGENE
  ENSRNOT00000047387.8 UniProtKB/TrEMBL
  ENSRNOT00000099970 ENTREZGENE
  ENSRNOT00000099970.2 UniProtKB/TrEMBL
  ENSRNOT00000114370 ENTREZGENE
  ENSRNOT00000114370.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  4.10.640.40 UniProtKB/TrEMBL
InterPro CEBP_ZZ UniProtKB/TrEMBL
  CEBP_ZZ_sf UniProtKB/TrEMBL
  CPEB UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_RNP1 UniProtKB/TrEMBL
NCBI Gene 309510 ENTREZGENE
PANTHER CYTOPLASMIC POLYADENYLATION ELEMENT-BINDING PROTEIN 3 UniProtKB/TrEMBL
  PTHR12566 UniProtKB/TrEMBL
Pfam CEBP_ZZ UniProtKB/TrEMBL
  RRM_7 UniProtKB/TrEMBL
PhenoGen Cpeb3 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020689 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8I5Y6H1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GA10 ENTREZGENE, UniProtKB/TrEMBL
  A6I161 ENTREZGENE, UniProtKB/TrEMBL
  D4AD99 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Cpeb3  cytoplasmic polyadenylation element binding protein 3  RGD1564670_predicted  similar to mKIAA0940 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564670_predicted  similar to mKIAA0940 protein (predicted)  LOC309510  similar to mKIAA0940 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC309510  similar to mKIAA0940 protein      Symbol and Name status set to provisional 70820 PROVISIONAL