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Gene: Ddx6 (DEAD-box helicase 6) Rattus norvegicus

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Symbol:

Ddx6

Name:

DEAD-box helicase 6

RGD ID:

1564560

Description:

Predicted to enable mRNA binding activity and protein domain specific binding activity. Involved in spermatid differentiation. Located in several cellular components, including chromatoid body; concave side of sperm head; and sperm flagellum. Orthologous to human DDX6 (DEAD-box helicase 6); PARTICIPATES IN microRNA pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DEAD (Asp-Glu-Ala-Asp) box helicase 6; DEAD (Asp-Glu-Ala-Asp) box polypeptide 6; hypothetical protein LOC500988; LOC500988; probable ATP-dependent RNA helicase DDX6; RGD1564560; similar to RCK

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DDX6 (DEAD-box helicase 6)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Ddx6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ddx6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DDX6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DDX6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ddx6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DDX6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DDX6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ddx6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ddx6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ddx6 (DEAD-box helicase 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DDX6 (DEAD-box helicase 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ddx6 (DEAD (Asp-Glu-Ala-Asp) box helicase 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ddx61 (DEAD (Asp-Glu-Ala-Asp) box helicase 61)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	DHH1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	cgh-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	me31B	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ddx6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	53,827,661 - 53,864,538 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	53,827,835 - 53,860,977 (+)	Ensembl				GRCr8
mRatBN7.2	8	44,931,127 - 44,967,773 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	22,204,317 - 22,205,824 (-)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	8	44,931,974 - 44,964,405 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	50,426,881 - 50,459,302 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	48,705,602 - 48,738,020 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	46,576,050 - 46,608,655 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	48,924,768 - 48,961,394 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,925,604 - 48,958,026 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	47,573,536 - 47,605,957 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	44,516,910 - 44,549,312 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

INTELLECTUAL DEVELOPMENTAL DISORDER WITH IMPAIRED LANGUAGE AND DYSMORPHIC FACIES (ISO)

rheumatoid arthritis (ISO)

teratoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dimethoxyphenol (ISO)

3,4-methylenedioxymethamphetamine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acetazolamide (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

Butylbenzyl phthalate (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

chloroprene (EXP)

chlorpyrifos (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyproconazole (ISO)

dexamethasone (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

fenthion (ISO)

folic acid (ISO)

furfural (ISO)

geldanamycin (ISO)

gentamycin (EXP)

glyphosate (ISO)

indometacin (ISO)

ivermectin (ISO)

leflunomide (ISO)

methidathion (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

Nivalenol (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

progesterone (ISO)

propiconazole (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

tert-butyl hydroperoxide (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (ISO)

trichostatin A (ISO)

triphenyl phosphate (EXP,ISO)

troglitazone (ISO)

trovafloxacin (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

miRNA-mediated gene silencing by inhibition of translation (ISO)

negative regulation of neuron differentiation (ISO)

negative regulation of translation (IBA,IEA,ISO)

P-body assembly (IBA,ISO)

spermatid differentiation (IEP)

spermatogenesis (IEP)

stem cell population maintenance (ISO)

stress granule assembly (IBA)

viral RNA genome packaging (IEA,ISO)

Cellular Component

adherens junction (IDA)

chromatoid body (IDA)

concave side of sperm head (IDA)

cytoplasm (IEA,ISO)

cytoplasmic ribonucleoprotein granule (IEA,ISO)

cytoplasmic stress granule (IBA,IEA,ISO)

cytosol (IEA,ISO)

heterochromatin (IDA)

nucleus (IEA,ISO)

outer dense fiber (IDA)

P-body (IBA,IEA,ISO)

perinuclear region of cytoplasm (IDA)

RISC complex (IEA,ISO)

sperm annulus (IDA)

Molecular Function

ATP binding (IEA)

helicase activity (IEA)

hydrolase activity (IEA)

mRNA binding (IBA)

nucleic acid binding (IEA)

nucleotide binding (IEA)

protein binding (ISO)

protein domain specific binding (IEA,ISO)

RNA binding (IEA)

RNA helicase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

microRNA pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	The role of disordered protein regions in the assembly of decapping complexes and RNP granules.	Jonas S and Izaurralde E, Genes Dev. 2013 Dec 15;27(24):2628-41. doi: 10.1101/gad.227843.113.
3.	DDX6 localizes to nuage structures and the annulus of mammalian spermatogenic cells.	Kawahara C, etal., Histochem Cell Biol. 2014 Jan;141(1):111-21. doi: 10.1007/s00418-013-1153-2. Epub 2013 Oct 20.
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:16699599	PMID:17392519	PMID:19946888	PMID:20014101	PMID:20616046	PMID:20826699	PMID:22022269	PMID:22658674	PMID:22681889	PMID:22915799	PMID:23125361	PMID:24768540
PMID:25456498	PMID:25468996	PMID:25931508	PMID:26184334	PMID:31422817

Genomics

Comparative Map Data

Ddx6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	53,827,661 - 53,864,538 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	53,827,835 - 53,860,977 (+)	Ensembl				GRCr8
mRatBN7.2	8	44,931,127 - 44,967,773 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	22,204,317 - 22,205,824 (-)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	8	44,931,974 - 44,964,405 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	50,426,881 - 50,459,302 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	48,705,602 - 48,738,020 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	46,576,050 - 46,608,655 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	48,924,768 - 48,961,394 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,925,604 - 48,958,026 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	47,573,536 - 47,605,957 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	44,516,910 - 44,549,312 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

DDX6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	118,747,763 - 118,791,744 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	118,747,763 - 118,791,226 (-)	Ensembl			hg38	GRCh38
GRCh37	11	118,618,472 - 118,662,453 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	118,125,623 - 118,167,082 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	118,125,622 - 118,167,082	NCBI
Celera	11	115,780,242 - 115,819,622 (-)	NCBI		Celera
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	114,556,823 - 114,600,235 (-)	NCBI		HuRef
CHM1_1	11	118,505,094 - 118,548,632 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	118,766,827 - 118,810,815 (-)	NCBI		T2T-CHM13v2.0

Ddx6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	44,514,113 - 44,552,028 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	44,516,189 - 44,552,028 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	44,602,983 - 44,640,731 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	44,604,892 - 44,640,731 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	44,412,975 - 44,448,814 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	44,355,893 - 44,388,101 (+)	NCBI		MGSCv36	mm8
Celera	9	41,863,195 - 41,899,760 (+)	NCBI		Celera
Cytogenetic Map	9	A5.2	NCBI
cM Map	9	24.84	NCBI

Ddx6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	19,854,785 - 19,889,426 (-)	Ensembl
ChiLan1.0	NW_004955412	19,854,785 - 19,889,422 (-)	NCBI	ChiLan1.0	ChiLan1.0

DDX6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	119,453,752 - 119,498,067 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	120,558,829 - 120,603,124 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	113,587,220 - 113,630,995 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	117,515,778 - 117,559,364 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	117,515,778 - 117,559,364 (-)	Ensembl			panPan2	panpan1.1

DDX6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	15,001,988 - 15,034,128 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	15,002,246 - 15,032,348 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	15,054,936 - 15,087,107 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	14,945,428 - 14,978,064 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	14,945,433 - 14,976,842 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	15,084,071 - 15,116,251 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	14,987,876 - 15,020,015 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	15,027,713 - 15,060,132 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ddx6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	100,827,190 - 100,860,033 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	3,748,575 - 3,780,692 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	3,748,599 - 3,781,405 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DDX6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	46,025,625 - 46,063,818 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	46,025,616 - 46,063,836 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	51,060,184 - 51,098,397 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DDX6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	110,128,450 - 110,172,383 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	110,135,471 - 110,167,463 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	15,861,815 - 15,906,220 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ddx6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	14,142,051 - 14,178,868 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624784	14,142,051 - 14,178,845 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ddx6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	39,147,035 - 39,180,102 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ddx6
236 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	142
Count of miRNA genes:	89
Interacting mature miRNAs:	123
Transcripts:	ENSRNOT00000017391
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	39106258	91341052	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39752803	84752803	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	39106258	91341052	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	39106363	103375781	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	50763951	95763951	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	39106258	84106258	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	51589699	99045312	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	39106363	103375781	Rat
5684993	Bmd84	Bone mineral density QTL 84	4.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	8	51589699	58991895	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	44477926	89477926	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	39106258	103375958	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	39106258	91341052	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	37760859	58991895	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	47541419	92541419	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	35464071	71842899	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	37760859	61459705	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	39106258	84106258	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	31543661	76543661	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	49610204	68373388	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	84106258	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	50763951	107970527	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	44447837	89447837	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	49610204	94610204	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	67378345	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	39106258	91341052	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	49245178	94245178	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	39106258	103375958	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	34125902	55607752	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	50763951	67219641	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	49245178	94245178	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	44475043	89475043	Rat

Markers in Region

RH137988

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	44,959,396 - 44,959,607 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	48,953,020 - 48,953,230	NCBI	Rnor6.0
Rnor_5.0	8	47,571,340 - 47,571,550	UniSTS	Rnor5.0
RGSC_v3.4	8	47,600,951 - 47,601,161	UniSTS	RGSC3.4
Celera	8	44,544,306 - 44,544,516	UniSTS
RH 3.4 Map	8	437.5	UniSTS
Cytogenetic Map	8	q22	UniSTS

UniSTS:265520

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	13	5,345,324 - 5,345,813	NCBI	Rnor5.0
Rnor_5.0	8	24,880,842 - 24,881,319	NCBI	Rnor5.0
Rnor_5.0	13	5,347,411 - 5,347,833	NCBI	Rnor5.0
Rnor_5.0	8	4,260,633 - 4,261,122	NCBI	Rnor5.0
RGSC_v3.4	1	62,083,022 - 62,083,510	UniSTS	RGSC3.4
RGSC_v3.4	13	22,163,646 - 22,164,135	UniSTS	RGSC3.4
Celera	8	3,540,093 - 3,540,581	UniSTS
Celera	13	3,810,235 - 3,810,724	UniSTS
Cytogenetic Map	13	p12	UniSTS
Cytogenetic Map	8	q22	UniSTS
Cytogenetic Map	1	q12	UniSTS

UniSTS:265517

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	22,204,939 - 22,205,700 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	63,776,113 - 63,776,875 (-)	MAPPER	mRatBN7.2
Rnor_6.0	8	4,243,475 - 4,244,236	NCBI	Rnor6.0
Rnor_6.0	8	24,844,522 - 24,845,282	NCBI	Rnor6.0
Rnor_5.0	8	4,259,892 - 4,260,653	UniSTS	Rnor5.0
Rnor_5.0	8	24,881,300 - 24,882,060	UniSTS	Rnor5.0
Cytogenetic Map	13	p12	UniSTS
Cytogenetic Map	1	q12	UniSTS
Cytogenetic Map	8	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000077445 ⟹ ENSRNOP00000073900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	53,827,835 - 53,860,977 (+)	Ensembl
mRatBN7.2 Ensembl	8	44,931,974 - 44,964,405 (+)	Ensembl
Rnor_6.0 Ensembl	8	48,925,604 - 48,958,026 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094720 ⟹ ENSRNOP00000077264

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	22,204,317 - 22,205,824 (-)	Ensembl

RefSeq Acc Id:

NM_001109292 ⟹ NP_001102762

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,828,749 - 53,861,170 (+)	NCBI
mRatBN7.2	8	44,931,974 - 44,964,405 (+)	NCBI
Rnor_6.0	8	48,925,604 - 48,958,026 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI
RGSC_v3.4	8	47,573,536 - 47,605,957 (+)	RGD
Celera	8	44,516,910 - 44,549,312 (+)	RGD

Sequence:

show sequence

GGAGCTTCGAGTCAACAATAAAGGACCGAGGGTGCGGAGCGGGAGTGGCCTGGGTGGTAGGACT
CGGGCCCGAGCCGCGGGGCGTGGGATTGAAGTGAGTGAATTCAGATATAATTCAAGCTTGTTAG
AGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTGCTGCTTACC
GGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAGCAAGACTTA
TTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAA
GTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGAACCCTGTTA
TCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGCCGGCCCTGG
AGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACAATCAATAAT
GGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGA
CTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCACAAAAGGAAA
TGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGAA
AAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTA
GAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCT
GAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGT
CAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAA
CCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGCTACCCCTGG
CAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATGATAGTATTG
GATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTATTCTCACAC
TACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTAT
GAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTGAAAGGGGTG
ACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACACTCTTCTCCA
GGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTTACTGGCCAA
GAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGA
AATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTA
CCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGA
GACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTG
ATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAAC
CCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGA
TGAGAAACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGTGACGCATCA
TTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAACTATGAAGA
GTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAAAAGAAGAAA
TGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCACTAACTGCT
GGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGGGAGAAACCC
TAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCGACTCTACTG
CATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTACTTATTTGTG
CAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGAGGAATCAAC
AAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTTCAAGTTGAA
GTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTGATGGTAGCG
CCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACACTGTAAATA
CATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTAGACGCACCA
TCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCCTCTGTGCTC
TACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGTGCAAAGACT
TGTCGGAGCC

hide sequence

RefSeq Acc Id:

XM_006242950 ⟹ XP_006243012

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,828,647 - 53,864,538 (+)	NCBI
mRatBN7.2	8	44,931,872 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,925,547 - 48,961,394 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI

Sequence:

show sequence

GGGGCCGGGTGGGGGCGGGCGGAGGTTTCCGAGGAGGAAGGAGCCGCCGCCATTTTGGGAGCTT
CGAGTCAACAATAAAGGACCGAGGATTGAAGTGAGTGAATTCAGATATAATTCAAGCTTGTTAG
AGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTGCTGCTTACC
GGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAGCAAGACTTA
TTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAA
GTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGAACCCTGTTA
TCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGCCGGCCCTGG
AGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACAATCAATAAT
GGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGA
CTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCACAAAAGGAAA
TGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGAA
AAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTA
GAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCT
GAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGT
CAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAA
CCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGCTACCCCTGG
CAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATGATAGTATTG
GATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTATTCTCACAC
TACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTAT
GAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTGAAAGGGGTG
ACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACACTCTTCTCCA
GGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTTACTGGCCAA
GAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGA
AATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTA
CCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGA
GACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTG
ATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAAC
CCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGA
TGAGAAACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGTGACGCATCA
TTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAACTATGAAGA
GTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAAAAGAAGAAA
TGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCACTAACTGCT
GGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGGGAGAAACCC
TAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCGACTCTACTG
CATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTACTTATTTGTG
CAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGAGGAATCAAC
AAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTTCAAGTTGAA
GTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTGATGGTAGCG
CCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACACTGTAAATA
CATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTAGACGCACCA
TCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCCTCTGTGCTC
TACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGTGCAAAGACT
TGTCGGAGCCTTGACCCTCTTTCCTCTGTGGCAAAGCGCGACCCATAGAAAATTGTATGTGTAT
ACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATATATATATATAAATATATA
TATATACATACATATATATATTATTTTTTTTGGATGAAGGTTGCTGGGATTAAGGGATTAGAGT
GATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACACTAAATTCTAAAAAGTG
CTTTGGCCTCTAACTATAGGAAGTAGACCTCTGCAGGGCCTGTGTTGGAAAAGGGCCCAGAAGC
CCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAGCGGTCTTAGCAGACAGC
AAGGAAGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTCGAGAAGCTCTGTGGTTTGGCTCTCCTG
TCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAGATTAATCTTCCTTGGAG
TATGAGAAGTGTACGGAGTGCAGTCTTAGAGCAGAGAGTGTGAACATGGATTCGTACTTCACTG
GACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGTTATCTGCGGTCACCTCC
TGTAGTGTGTGAGTGAACGAAAGCCCTCTGCCCACCTTGACTTGTACATGTTTGCGGGAATGGG
CGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCATTCTCGTGCCTGCCGCA
GCAAGAATTGCTGTCTGTCCTTTCTTTCGCATTGTAAATTGCCGGCAGATGCTTTAGGTGGGTA
GTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCAGGCAAAAGG
AGTGAGATGAATCAAAACCAGTGAACTTTTTTTTAAAAAAATGTTTTTAATTCCCTTTTAACCC
AGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAACAAAATTTAAAAAAAAAA
CTGATTTTCATATTCCATCACTTTGAAAACCTTAAACCTATGACAAGGTATGTCACGTGTACGC
TGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTGCTTTTTGACTGTGCCTA
GTTCTAAAGCAAAACTATTTGTGACCTGTCCCAAATTCCTTGGGGATCAAAATCCTAAAGATGC
CTCCTTACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTGCACGGTACAAAACCCCA
AAAGGCAAGTCCAGTCAGTGTTGGTTACAAAACAGAAACCAAATTAAGGAAGTCACTTTTTTAG
GGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTGCCCTTGTACCGATGCAG
TTCTCCTCCTTCCTGCCTTTGGCGAGATGAGAGGGATCTCCATGTAGATCAGCAGCAGGAACGG
AGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCAACAAGGTGCAGTCTCTT
GCCAACCTTGGACTGCTCTGCTAGGTGCCACATGCCTATGAGTCCCTCTTAAAGCACAGACTCC
ACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTTGGACTAGCTGAGCACCC
CACTGTCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAGCTCGCTTGAGCTGTTAATGGAAAGATG
CCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTTTTCTTTTTTTCCTTTTT
AATCCCTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCAGGTTCTTTCCAGTAATT
TTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGATAAAAACTATGTCCTAT
TTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCATAAGCTGTGTAATGAGTCACAGACTGT
TACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATGTTCTGAACATGAAAAAA
CTTTCTTAGAAATGGAATACATTTACCATAAAATGTTTTCCCTGAAAAGGAAAACCTAAGTAAT
TCTAAATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGCCCAAAATGGTGGGGTGG
GGTGGGTGGTTGTCATAACTCGTTTTCAGAATGAGATGAGGGCATCTTTCCTTGGCCACCTGCT
TTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAAAGCTTTGAAAAGTGTTG
GAAACAAAACATCTCATTCTGATCATTTGTTTGTTGTTTTTTTTGTTTGTTTTTTGTTTTGTTT
TGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAAAGGGAGGGTGTCTGCAC
TAAGGATTTAGAAACACTTTGGAAGCTCATAGCCTCATGGGAAACTGCCTTTAGCCACACTCCT
GACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTAAGCCATGTTATTTTAAT
TGGATACTTTTTTTTTTCAACTTTCTGTGTATCTTTAAAATTGTTACTGTGGAATGATTTTCTT
GCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAAGTAAGCCAGATTTTGGG
TGAATTTATGTGGACTTTGGTGAGTTTGTAGTTCTACTTTATATTCATAAAGATAGTTTTTTAA
AACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCTTTGGAGGAAAGAGTTAA
GTGTCCAAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTCGCCTGGCCTGGACGCTGCCCCTC
CACAGCTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGACAGAGCTGGGCAGGGCAA
GGGAGGGTGGGCCTGGGTTAGTGAGATGCAGGCTGCTGTATTTTAACCAGTGGTTCTTGGGGAG
GGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACCAATTAGAAAAAAACTAC
AATTTTTTTGTTTAGTAAAAATAAGAAAATTCTAATGTCCCTAGTCACAAGGGACCAGTTCCAC
TTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGAAAATTGGCTTTCTGTTT
AATTGGCAAATGTTCCAGTGGGAGGGTCTGTTTTTGTTGGGATGTGTTACAGTATATGTACATG
TCTATGGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGATGGTTGGTAAAATCTTG
ATTATTTCTTTTTGTTAATTTATCTCAATAAAAGCCCACTGGAACTCCAA

hide sequence

RefSeq Acc Id:

XM_006242951 ⟹ XP_006243013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,828,474 - 53,864,538 (+)	NCBI
mRatBN7.2	8	44,931,699 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,925,363 - 48,961,394 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI

Sequence:

show sequence

GAGGGAGGGAGACGACAGCGGCGGGCGAGGGAGGGGGCAGAGCAGCAGAGTCAGCTCCGCTCAG
CGGCGACATCCGGGGCGCCGGCACAGCGGGCTACGGCCGAGATTGAAGTGAGTGAATTCAGATA
TAATTCAAGCTTGTTAGAGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTT
AACTACTGCTGCTTACCGGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCAT
ATATTGAGCAAGACTTATTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTC
TCTACTGACTTTGAAAAGTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAG
GACAGAGAACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAG
GCCAGTGCCGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACA
CCAGCACAATCAATAATGGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGG
TGATGACTGGAAAAAGACTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTG
ACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTT
TTGAAATGGGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGG
TAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTA
CTTGAACGGCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAAC
TTGCTCTACAGGTCAGTCAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGAT
GGCGACCACTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTG
GTGATTGCTACCCCTGGCAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATG
TCCAGATGATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGA
GGATATTATTCTCACACTACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTT
AGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGC
TAACTCTGAAAGGGGTGACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCT
CAATACACTCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGA
GTTGAGTTACTGGCCAAGAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAA
TGAGGCAGGAACATAGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGT
TTGCACTGATCTGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGAC
TTCCCAAAGCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTG
GCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCT
GGGGACAGAGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCAC
AGTGAGCCTGCAGAAGATGAGAAACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTT
GGATCTGTGACGCATCATTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTA
TTTTGGAACTATGAAGAGTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAA
AAACTGAAAAGAAGAAATGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTT
TCGTTGCACTAACTGCTGGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAA
AAGAAAGGGAGAAACCCTAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCC
GATAGCCGACTCTACTGCATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAG
CTTACTACTTATTTGTGCAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCA
CAGCCCGAGGAATCAACAAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCA
TTTGGTTTCAAGTTGAAGTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTG
GACTAGTGATGGTAGCGCCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTC
CATCCACACTGTAAATACATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGG
GCTGAGTAGACGCACCATCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATAT
GACAAGCCTCTGTGCTCTACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGG
CACTGGGTGCAAAGACTTGTCGGAGCCTTGACCCTCTTTCCTCTGTGGCAAAGCGCGACCCATA
GAAAATTGTATGTGTATACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATAT
ATATATATAAATATATATATATACATACATATATATATTATTTTTTTTGGATGAAGGTTGCTGG
GATTAAGGGATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACA
CTAAATTCTAAAAAGTGCTTTGGCCTCTAACTATAGGAAGTAGACCTCTGCAGGGCCTGTGTTG
GAAAAGGGCCCAGAAGCCCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAG
CGGTCTTAGCAGACAGCAAGGAAGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTCGAGAAGCTCT
GTGGTTTGGCTCTCCTGTCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAG
ATTAATCTTCCTTGGAGTATGAGAAGTGTACGGAGTGCAGTCTTAGAGCAGAGAGTGTGAACAT
GGATTCGTACTTCACTGGACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGT
TATCTGCGGTCACCTCCTGTAGTGTGTGAGTGAACGAAAGCCCTCTGCCCACCTTGACTTGTAC
ATGTTTGCGGGAATGGGCGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCA
TTCTCGTGCCTGCCGCAGCAAGAATTGCTGTCTGTCCTTTCTTTCGCATTGTAAATTGCCGGCA
GATGCTTTAGGTGGGTAGTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCT
GATCTCCAGGCAAAAGGAGTGAGATGAATCAAAACCAGTGAACTTTTTTTTAAAAAAATGTTTT
TAATTCCCTTTTAACCCAGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAAC
AAAATTTAAAAAAAAAACTGATTTTCATATTCCATCACTTTGAAAACCTTAAACCTATGACAAG
GTATGTCACGTGTACGCTGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTG
CTTTTTGACTGTGCCTAGTTCTAAAGCAAAACTATTTGTGACCTGTCCCAAATTCCTTGGGGAT
CAAAATCCTAAAGATGCCTCCTTACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTG
CACGGTACAAAACCCCAAAAGGCAAGTCCAGTCAGTGTTGGTTACAAAACAGAAACCAAATTAA
GGAAGTCACTTTTTTAGGGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTG
CCCTTGTACCGATGCAGTTCTCCTCCTTCCTGCCTTTGGCGAGATGAGAGGGATCTCCATGTAG
ATCAGCAGCAGGAACGGAGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCA
ACAAGGTGCAGTCTCTTGCCAACCTTGGACTGCTCTGCTAGGTGCCACATGCCTATGAGTCCCT
CTTAAAGCACAGACTCCACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTT
GGACTAGCTGAGCACCCCACTGTCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAGCTCGCTTGAG
CTGTTAATGGAAAGATGCCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTT
TTCTTTTTTTCCTTTTTAATCCCTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCA
GGTTCTTTCCAGTAATTTTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGA
TAAAAACTATGTCCTATTTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCATAAGCTGTGT
AATGAGTCACAGACTGTTACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATG
TTCTGAACATGAAAAAACTTTCTTAGAAATGGAATACATTTACCATAAAATGTTTTCCCTGAAA
AGGAAAACCTAAGTAATTCTAAATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGC
CCAAAATGGTGGGGTGGGGTGGGTGGTTGTCATAACTCGTTTTCAGAATGAGATGAGGGCATCT
TTCCTTGGCCACCTGCTTTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAA
AGCTTTGAAAAGTGTTGGAAACAAAACATCTCATTCTGATCATTTGTTTGTTGTTTTTTTTGTT
TGTTTTTTGTTTTGTTTTGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAA
AGGGAGGGTGTCTGCACTAAGGATTTAGAAACACTTTGGAAGCTCATAGCCTCATGGGAAACTG
CCTTTAGCCACACTCCTGACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTA
AGCCATGTTATTTTAATTGGATACTTTTTTTTTTCAACTTTCTGTGTATCTTTAAAATTGTTAC
TGTGGAATGATTTTCTTGCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAA
GTAAGCCAGATTTTGGGTGAATTTATGTGGACTTTGGTGAGTTTGTAGTTCTACTTTATATTCA
TAAAGATAGTTTTTTAAAACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCT
TTGGAGGAAAGAGTTAAGTGTCCAAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTCGCCTGG
CCTGGACGCTGCCCCTCCACAGCTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGAC
AGAGCTGGGCAGGGCAAGGGAGGGTGGGCCTGGGTTAGTGAGATGCAGGCTGCTGTATTTTAAC
CAGTGGTTCTTGGGGAGGGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACC
AATTAGAAAAAAACTACAATTTTTTTGTTTAGTAAAAATAAGAAAATTCTAATGTCCCTAGTCA
CAAGGGACCAGTTCCACTTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGA
AAATTGGCTTTCTGTTTAATTGGCAAATGTTCCAGTGGGAGGGTCTGTTTTTGTTGGGATGTGT
TACAGTATATGTACATGTCTATGGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGA
TGGTTGGTAAAATCTTGATTATTTCTTTTTGTTAATTTATCTCAATAAAAGCCCACTGGAACTC
CAA

hide sequence

RefSeq Acc Id:

XM_006242952 ⟹ XP_006243014

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,828,686 - 53,864,538 (+)	NCBI
mRatBN7.2	8	44,931,911 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,925,563 - 48,961,394 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI

Sequence:

show sequence

GGGCGGAGGTTTCCGAGGAGGAAGGAGCCGCCGCCATTTTGGGAGCTTCGAGTCAACAATAAAG
GACCGAGGGTGCGGAGCGGGAGTGGCCTGGGTGATTGAAGTGAGTGAATTCAGATATAATTCAA
GCTTGTTAGAGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTG
CTGCTTACCGGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAG
CAAGACTTATTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGA
CTTTGAAAAGTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGA
ACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGC
CGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACA
ATCAATAATGGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACT
GGAAAAAGACTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCAC
AAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATG
GGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATA
TCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACG
GCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTA
CAGGTCAGTCAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCA
CTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGC
TACCCCTGGCAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATG
ATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTA
TTCTCACACTACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACA
AAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTG
AAAGGGGTGACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACAC
TCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTT
ACTGGCCAAGAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAG
GAACATAGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTG
ATCTGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAA
GCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCC
ATCAACTTGATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAG
AGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCC
TGCAGAAGATGAGAAACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGT
GACGCATCATTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAA
CTATGAAGAGTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAA
AAGAAGAAATGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCA
CTAACTGCTGGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGG
GAGAAACCCTAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCG
ACTCTACTGCATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTAC
TTATTTGTGCAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGA
GGAATCAACAAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTT
CAAGTTGAAGTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTG
ATGGTAGCGCCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACA
CTGTAAATACATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTA
GACGCACCATCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCC
TCTGTGCTCTACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGT
GCAAAGACTTGTCGGAGCCTTGACCCTCTTTCCTCTGTGGCAAAGCGCGACCCATAGAAAATTG
TATGTGTATACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATATATATATAT
AAATATATATATATACATACATATATATATTATTTTTTTTGGATGAAGGTTGCTGGGATTAAGG
GATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACACTAAATTC
TAAAAAGTGCTTTGGCCTCTAACTATAGGAAGTAGACCTCTGCAGGGCCTGTGTTGGAAAAGGG
CCCAGAAGCCCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAGCGGTCTTA
GCAGACAGCAAGGAAGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTCGAGAAGCTCTGTGGTTTG
GCTCTCCTGTCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAGATTAATCT
TCCTTGGAGTATGAGAAGTGTACGGAGTGCAGTCTTAGAGCAGAGAGTGTGAACATGGATTCGT
ACTTCACTGGACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGTTATCTGCG
GTCACCTCCTGTAGTGTGTGAGTGAACGAAAGCCCTCTGCCCACCTTGACTTGTACATGTTTGC
GGGAATGGGCGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCATTCTCGTG
CCTGCCGCAGCAAGAATTGCTGTCTGTCCTTTCTTTCGCATTGTAAATTGCCGGCAGATGCTTT
AGGTGGGTAGTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCA
GGCAAAAGGAGTGAGATGAATCAAAACCAGTGAACTTTTTTTTAAAAAAATGTTTTTAATTCCC
TTTTAACCCAGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAACAAAATTTA
AAAAAAAAACTGATTTTCATATTCCATCACTTTGAAAACCTTAAACCTATGACAAGGTATGTCA
CGTGTACGCTGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTGCTTTTTGA
CTGTGCCTAGTTCTAAAGCAAAACTATTTGTGACCTGTCCCAAATTCCTTGGGGATCAAAATCC
TAAAGATGCCTCCTTACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTGCACGGTAC
AAAACCCCAAAAGGCAAGTCCAGTCAGTGTTGGTTACAAAACAGAAACCAAATTAAGGAAGTCA
CTTTTTTAGGGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTGCCCTTGTA
CCGATGCAGTTCTCCTCCTTCCTGCCTTTGGCGAGATGAGAGGGATCTCCATGTAGATCAGCAG
CAGGAACGGAGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCAACAAGGTG
CAGTCTCTTGCCAACCTTGGACTGCTCTGCTAGGTGCCACATGCCTATGAGTCCCTCTTAAAGC
ACAGACTCCACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTTGGACTAGC
TGAGCACCCCACTGTCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAGCTCGCTTGAGCTGTTAAT
GGAAAGATGCCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTTTTCTTTTT
TTCCTTTTTAATCCCTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCAGGTTCTTT
CCAGTAATTTTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGATAAAAACT
ATGTCCTATTTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCATAAGCTGTGTAATGAGTC
ACAGACTGTTACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATGTTCTGAAC
ATGAAAAAACTTTCTTAGAAATGGAATACATTTACCATAAAATGTTTTCCCTGAAAAGGAAAAC
CTAAGTAATTCTAAATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGCCCAAAATG
GTGGGGTGGGGTGGGTGGTTGTCATAACTCGTTTTCAGAATGAGATGAGGGCATCTTTCCTTGG
CCACCTGCTTTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAAAGCTTTGA
AAAGTGTTGGAAACAAAACATCTCATTCTGATCATTTGTTTGTTGTTTTTTTTGTTTGTTTTTT
GTTTTGTTTTGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAAAGGGAGGG
TGTCTGCACTAAGGATTTAGAAACACTTTGGAAGCTCATAGCCTCATGGGAAACTGCCTTTAGC
CACACTCCTGACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTAAGCCATGT
TATTTTAATTGGATACTTTTTTTTTTCAACTTTCTGTGTATCTTTAAAATTGTTACTGTGGAAT
GATTTTCTTGCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAAGTAAGCCA
GATTTTGGGTGAATTTATGTGGACTTTGGTGAGTTTGTAGTTCTACTTTATATTCATAAAGATA
GTTTTTTAAAACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCTTTGGAGGA
AAGAGTTAAGTGTCCAAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTCGCCTGGCCTGGACG
CTGCCCCTCCACAGCTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGACAGAGCTGG
GCAGGGCAAGGGAGGGTGGGCCTGGGTTAGTGAGATGCAGGCTGCTGTATTTTAACCAGTGGTT
CTTGGGGAGGGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACCAATTAGAA
AAAAACTACAATTTTTTTGTTTAGTAAAAATAAGAAAATTCTAATGTCCCTAGTCACAAGGGAC
CAGTTCCACTTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGAAAATTGGC
TTTCTGTTTAATTGGCAAATGTTCCAGTGGGAGGGTCTGTTTTTGTTGGGATGTGTTACAGTAT
ATGTACATGTCTATGGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGATGGTTGGT
AAAATCTTGATTATTTCTTTTTGTTAATTTATCTCAATAAAAGCCCACTGGAACTCCAA

hide sequence

RefSeq Acc Id:

XM_006242954 ⟹ XP_006243016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,827,661 - 53,864,538 (+)	NCBI
mRatBN7.2	8	44,931,127 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,924,768 - 48,961,394 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI

Sequence:

show sequence

TTTCTAGAAGAGTGCCACTGCCGGCAGGAGCAAAGGGTCACCTCGCCTGCACTCTGGGCTTGGT
AGCCCACGACCTAGGGCGGGCTCCCGGTTCACGCTTTCCCCGCTGCCTCGCCGACAGCCTCGGC
CCTTCAGGCCCAATTTTTCTGCACGTCCCTGGGTGGAGGTGCGCCCTGGCCTCGCAGCAGCCTC
CCGGCCACCCCAGGTCAGCTTCCGGACCGGCGCAGGCTGCCCTCCGAGCGCGTCCCCGGTCAGC
AGTCAGCAGGCGTCCCCTCCGCCCGGCCCGGCCAGCCCAGCTCAGGAGGGACGAAGGCAAGGAC
GACACTCCCCGGCCACCATTCATTTCCCCACTGGTCTCCTCAGCTCTGCAGATTGAAGTGAGTG
AATTCAGATATAATTCAAGCTTGTTAGAGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTG
AGAGCAAGTTAACTACTGCTGCTTACCGGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATA
AAGGACTCATATATTGAGCAAGACTTATTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTA
TTACAGTTTCTCTACTGACTTTGAAAAGTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGA
GCACGGCCAGGACAGAGAACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGG
CCCTGTGAAGGCCAGTGCCGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAG
TTGAAGAACACCAGCACAATCAATAATGGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCA
TTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAAC
TTCGGATGTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTA
ATGGGAATTTTTGAAATGGGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTG
CTTTATCTGGTAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCT
CATCCCCTTACTTGAACGGCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCC
ACTAGAGAACTTGCTCTACAGGTCAGTCAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGG
CCAAAGTGATGGCGACCACTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACGATAC
AGTGCATGTGGTGATTGCTACCCCTGGCAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAG
GTTGATCATGTCCAGATGATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGC
AGATAATGGAGGATATTATTCTCACACTACCTAAAAATAGGCAGATTTTACTATATTCCGCTAC
TTTCCCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTG
ATGGAGGAGCTAACTCTGAAAGGGGTGACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAG
TGCACTGCCTCAATACACTCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTC
TTCTCAGAGAGTTGAGTTACTGGCCAAGAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATC
CATGCTAAAATGAGGCAGGAACATAGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCC
GCAATCTTGTTTGCACTGATCTGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAAT
AAACTTTGACTTCCCAAAGCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTT
GGTCATCTTGGCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAGAGTATTG
AGGAGCAGCTGGGGACAGAGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGC
AGAATACCACAGTGAGCCTGCAGAAGATGAGAAACCTTAACAAGCACGCTTTGACAAACTACAG
AAGGCTCCTTGGATCTGTGACGCATCATTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTT
TTCATCTTTATTTTGGAACTATGAAGAGTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAAC
TGGTGAAGAAAAACTGAAAAGAAGAAATGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTG
ACTGAACGTTTCGTTGCACTAACTGCTGGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGG
AAGGAGGAAAAAGAAAGGGAGAAACCCTAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCT
ACAGTTCTCCGATAGCCGACTCTACTGCATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAA
GCCTGAAGAGCTTACTACTTATTTGTGCAAAGTGCCTTACGCTACGAGACCATTAAGAATATCA
TCTTTTACCACAGCCCGAGGAATCAACAAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTT
TGCCTCTTCATTTGGTTTCAAGTTGAAGTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGG
CCGGAAGGTGGACTAGTGATGGTAGCGCCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCAC
AACTGCAGTCCATCCACACTGTAAATACATGTATTTAAAAAAAAAAAACAATACCAAGTAAAAT
TTTCTTCTGGGCTGAGTAGACGCACCATCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCA
GGAGCCATATGACAAGCCTCTGTGCTCTACGGCGGAACACTAACCTGGCTCACACGCTTCCATG
AGCAGTAAGGCACTGGGTGCAAAGACTTGTCGGAGCCTTGACCCTCTTTCCTCTGTGGCAAAGC
GCGACCCATAGAAAATTGTATGTGTATACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGT
TCATATATATATATATATAAATATATATATATACATACATATATATATTATTTTTTTTGGATGA
AGGTTGCTGGGATTAAGGGATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTT
TTCTGCAACACTAAATTCTAAAAAGTGCTTTGGCCTCTAACTATAGGAAGTAGACCTCTGCAGG
GCCTGTGTTGGAAAAGGGCCCAGAAGCCCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAAT
GTGCATGCAGCGGTCTTAGCAGACAGCAAGGAAGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTC
GAGAAGCTCTGTGGTTTGGCTCTCCTGTCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAG
GGGAACAAAGATTAATCTTCCTTGGAGTATGAGAAGTGTACGGAGTGCAGTCTTAGAGCAGAGA
GTGTGAACATGGATTCGTACTTCACTGGACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGT
GGAGCTTAGTTATCTGCGGTCACCTCCTGTAGTGTGTGAGTGAACGAAAGCCCTCTGCCCACCT
TGACTTGTACATGTTTGCGGGAATGGGCGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAG
CTGCTTACCATTCTCGTGCCTGCCGCAGCAAGAATTGCTGTCTGTCCTTTCTTTCGCATTGTAA
ATTGCCGGCAGATGCTTTAGGTGGGTAGTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGA
TGTTTGGCCTGATCTCCAGGCAAAAGGAGTGAGATGAATCAAAACCAGTGAACTTTTTTTTAAA
AAAATGTTTTTAATTCCCTTTTAACCCAGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAA
AGCAAAAAACAAAATTTAAAAAAAAAACTGATTTTCATATTCCATCACTTTGAAAACCTTAAAC
CTATGACAAGGTATGTCACGTGTACGCTGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTA
TTCCAAGTTGCTTTTTGACTGTGCCTAGTTCTAAAGCAAAACTATTTGTGACCTGTCCCAAATT
CCTTGGGGATCAAAATCCTAAAGATGCCTCCTTACCAGATATAACCCTGACTGTAACAGCTGTA
GCAGGAGCTGCACGGTACAAAACCCCAAAAGGCAAGTCCAGTCAGTGTTGGTTACAAAACAGAA
ACCAAATTAAGGAAGTCACTTTTTTAGGGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCA
ACAGATCTTGCCCTTGTACCGATGCAGTTCTCCTCCTTCCTGCCTTTGGCGAGATGAGAGGGAT
CTCCATGTAGATCAGCAGCAGGAACGGAGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGT
GGGTGAGTCAACAAGGTGCAGTCTCTTGCCAACCTTGGACTGCTCTGCTAGGTGCCACATGCCT
ATGAGTCCCTCTTAAAGCACAGACTCCACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGC
TGTGGCACTTGGACTAGCTGAGCACCCCACTGTCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAG
CTCGCTTGAGCTGTTAATGGAAAGATGCCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTT
TTTTTTTTTTTTCTTTTTTTCCTTTTTAATCCCTCTTAATAAGGAATATTGCTACTATTGGAAA
TTGTCTTTCAGGTTCTTTCCAGTAATTTTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAG
TTCATTTGGATAAAAACTATGTCCTATTTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCA
TAAGCTGTGTAATGAGTCACAGACTGTTACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTC
TCCCTTAATGTTCTGAACATGAAAAAACTTTCTTAGAAATGGAATACATTTACCATAAAATGTT
TTCCCTGAAAAGGAAAACCTAAGTAATTCTAAATTATTTCCAAATGGGTATCAGCATCATAACA
ATTGGTTGGCCCAAAATGGTGGGGTGGGGTGGGTGGTTGTCATAACTCGTTTTCAGAATGAGAT
GAGGGCATCTTTCCTTGGCCACCTGCTTTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAG
CACAGCACAAAGCTTTGAAAAGTGTTGGAAACAAAACATCTCATTCTGATCATTTGTTTGTTGT
TTTTTTTGTTTGTTTTTTGTTTTGTTTTGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACT
GTGTCCCAAAAGGGAGGGTGTCTGCACTAAGGATTTAGAAACACTTTGGAAGCTCATAGCCTCA
TGGGAAACTGCCTTTAGCCACACTCCTGACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTT
GTGGGAATTAAGCCATGTTATTTTAATTGGATACTTTTTTTTTTCAACTTTCTGTGTATCTTTA
AAATTGTTACTGTGGAATGATTTTCTTGCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAA
GGGAGGTGAAGTAAGCCAGATTTTGGGTGAATTTATGTGGACTTTGGTGAGTTTGTAGTTCTAC
TTTATATTCATAAAGATAGTTTTTTAAAACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAA
AAACTCATCTTTGGAGGAAAGAGTTAAGTGTCCAAGGGTTGTAACAGATATGAGGTCAGAGGGA
GCTCGCCTGGCCTGGACGCTGCCCCTCCACAGCTGACAGACTCCAACAGAAGTGTATTTAAATC
TCCAGTGGACAGAGCTGGGCAGGGCAAGGGAGGGTGGGCCTGGGTTAGTGAGATGCAGGCTGCT
GTATTTTAACCAGTGGTTCTTGGGGAGGGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTG
AAACAAAACCAATTAGAAAAAAACTACAATTTTTTTGTTTAGTAAAAATAAGAAAATTCTAATG
TCCCTAGTCACAAGGGACCAGTTCCACTTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTG
GGGAAAGGGAAAATTGGCTTTCTGTTTAATTGGCAAATGTTCCAGTGGGAGGGTCTGTTTTTGT
TGGGATGTGTTACAGTATATGTACATGTCTATGGACCTGAGTCTTTAAGGAATTTATACATGGT
TCAGAAAAGATGGTTGGTAAAATCTTGATTATTTCTTTTTGTTAATTTATCTCAATAAAAGCCC
ACTGGAACTCCAA

hide sequence

RefSeq Acc Id:

XM_017595834 ⟹ XP_017451323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,829,078 - 53,864,538 (+)	NCBI
mRatBN7.2	8	44,932,308 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,925,798 - 48,961,394 (+)	NCBI

Sequence:

show sequence

CCGGGAGGACGGGCGGGTGGCCGCTGAGAGGAGCAGCGGCGGCGGCGGAGAGGAGTGGAACCGA
GGAATGTGGTGTGTGCCCGGTCTGGAGGAGGAGCGGTGGAGTGCTCTGGGCGAGCGGTGTGGTA
GACGGGAGCGGGGACGGAGCGGCGGCCGGGACTCCGGAGTGAGGTTGGGAGTGCGAGGCAGCCC
TGTTGGGGGCGGCAGGGCTGTGCTGTCCGGAGACTGGGCTAGGAGAGGACCCGCAGCTGCTCGG
TTGCAAGTAGGCCTTGCAGATTGAAGTGAGTGAATTCAGATATAATTCAAGCTTGTTAGAGCGC
TTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTGCTGCTTACCGGTGA
GAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAGCAAGACTTATTTAT
CTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAAGTTTG
AAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGAACCCTGTTATCATG
GGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGCCGGCCCTGGAGGAG
GGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACAATCAATAATGGCAC
TCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGACTTTA
AAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCACAAAAGGAAATGAGT
TTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGAAAAACC
ATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTAGAGCA
AAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCTGAAGA
AGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAAAT
TTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAACCAAT
TTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGCTACCCCTGGCAGAA
TCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATGATAGTATTGGATGA
GGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTATTCTCACACTACCT
AAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTATGAATT
CCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTGAAAGGGGTGACCCA
GTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACACTCTTCTCCAGGCTT
CAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTTACTGGCCAAGAAGA
TTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGAAATCG
TGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTACCCGA
GGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGAGACCT
ATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTGATCAC
ATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAACCCATC
CCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGATGAGA
AACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGTGACGCATCATTTTT
GGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAACTATGAAGAGTTAT
ATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAAAAGAAGAAATGGAC
CTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCACTAACTGCTGGTTT
TTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGGGAGAAACCCTAAAA
AGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCGACTCTACTGCATTT
CAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTACTTATTTGTGCAAAG
TGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGAGGAATCAACAAAGT
CACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTTCAAGTTGAAGTCTT
GCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTGATGGTAGCGCCATT
TTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACACTGTAAATACATGT
ATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTAGACGCACCATCGTC
GCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCCTCTGTGCTCTACGG
CGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGTGCAAAGACTTGTCG
GAGCCTTGACCCTCTTTCCTCTGTGGCAAAGCGCGACCCATAGAAAATTGTATGTGTATACTTG
TATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATATATATATATAAATATATATATAT
ACATACATATATATATTATTTTTTTTGGATGAAGGTTGCTGGGATTAAGGGATTAGAGTGATTA
TGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACACTAAATTCTAAAAAGTGCTTTG
GCCTCTAACTATAGGAAGTAGACCTCTGCAGGGCCTGTGTTGGAAAAGGGCCCAGAAGCCCAGG
GCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAGCGGTCTTAGCAGACAGCAAGGA
AGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTCGAGAAGCTCTGTGGTTTGGCTCTCCTGTCCTA
AACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAGATTAATCTTCCTTGGAGTATGA
GAAGTGTACGGAGTGCAGTCTTAGAGCAGAGAGTGTGAACATGGATTCGTACTTCACTGGACCA
GCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGTTATCTGCGGTCACCTCCTGTAG
TGTGTGAGTGAACGAAAGCCCTCTGCCCACCTTGACTTGTACATGTTTGCGGGAATGGGCGACC
CCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCATTCTCGTGCCTGCCGCAGCAAG
AATTGCTGTCTGTCCTTTCTTTCGCATTGTAAATTGCCGGCAGATGCTTTAGGTGGGTAGTGTT
GCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCAGGCAAAAGGAGTGA
GATGAATCAAAACCAGTGAACTTTTTTTTAAAAAAATGTTTTTAATTCCCTTTTAACCCAGTAT
ACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAACAAAATTTAAAAAAAAAACTGAT
TTTCATATTCCATCACTTTGAAAACCTTAAACCTATGACAAGGTATGTCACGTGTACGCTGCCA
TGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTGCTTTTTGACTGTGCCTAGTTCT
AAAGCAAAACTATTTGTGACCTGTCCCAAATTCCTTGGGGATCAAAATCCTAAAGATGCCTCCT
TACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTGCACGGTACAAAACCCCAAAAGG
CAAGTCCAGTCAGTGTTGGTTACAAAACAGAAACCAAATTAAGGAAGTCACTTTTTTAGGGAGG
GTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTGCCCTTGTACCGATGCAGTTCTC
CTCCTTCCTGCCTTTGGCGAGATGAGAGGGATCTCCATGTAGATCAGCAGCAGGAACGGAGTAT
AAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCAACAAGGTGCAGTCTCTTGCCAA
CCTTGGACTGCTCTGCTAGGTGCCACATGCCTATGAGTCCCTCTTAAAGCACAGACTCCACGTG
GAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTTGGACTAGCTGAGCACCCCACTG
TCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAGCTCGCTTGAGCTGTTAATGGAAAGATGCCCTA
CTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTTTTCTTTTTTTCCTTTTTAATCC
CTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCAGGTTCTTTCCAGTAATTTTTAA
AGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGATAAAAACTATGTCCTATTTTTA
ATATCCACCTCAATGCTTTTAGCCTCTGGTCATAAGCTGTGTAATGAGTCACAGACTGTTACAC
ACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATGTTCTGAACATGAAAAAACTTTC
TTAGAAATGGAATACATTTACCATAAAATGTTTTCCCTGAAAAGGAAAACCTAAGTAATTCTAA
ATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGCCCAAAATGGTGGGGTGGGGTGG
GTGGTTGTCATAACTCGTTTTCAGAATGAGATGAGGGCATCTTTCCTTGGCCACCTGCTTTGTG
GTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAAAGCTTTGAAAAGTGTTGGAAAC
AAAACATCTCATTCTGATCATTTGTTTGTTGTTTTTTTTGTTTGTTTTTTGTTTTGTTTTGTTT
TTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAAAGGGAGGGTGTCTGCACTAAGG
ATTTAGAAACACTTTGGAAGCTCATAGCCTCATGGGAAACTGCCTTTAGCCACACTCCTGACCT
TTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTAAGCCATGTTATTTTAATTGGAT
ACTTTTTTTTTTCAACTTTCTGTGTATCTTTAAAATTGTTACTGTGGAATGATTTTCTTGCCAA
ATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAAGTAAGCCAGATTTTGGGTGAAT
TTATGTGGACTTTGGTGAGTTTGTAGTTCTACTTTATATTCATAAAGATAGTTTTTTAAAACTC
CCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCTTTGGAGGAAAGAGTTAAGTGTC
CAAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTCGCCTGGCCTGGACGCTGCCCCTCCACAG
CTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGACAGAGCTGGGCAGGGCAAGGGAG
GGTGGGCCTGGGTTAGTGAGATGCAGGCTGCTGTATTTTAACCAGTGGTTCTTGGGGAGGGGTG
CCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACCAATTAGAAAAAAACTACAATTT
TTTTGTTTAGTAAAAATAAGAAAATTCTAATGTCCCTAGTCACAAGGGACCAGTTCCACTTTGA
ACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGAAAATTGGCTTTCTGTTTAATTG
GCAAATGTTCCAGTGGGAGGGTCTGTTTTTGTTGGGATGTGTTACAGTATATGTACATGTCTAT
GGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGATGGTTGGTAAAATCTTGATTAT
TTCTTTTTGTTAATTTATCTCAATAAAAGCCCACTGGAACTCCAA

hide sequence

RefSeq Acc Id:

XM_063265965 ⟹ XP_063122035

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	53,828,876 - 53,864,538 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102762	(Get FASTA)	NCBI Sequence Viewer
	NP_001421298	(Get FASTA)	NCBI Sequence Viewer
	NP_001421299	(Get FASTA)	NCBI Sequence Viewer
	NP_001421300	(Get FASTA)	NCBI Sequence Viewer
	NP_001421301	(Get FASTA)	NCBI Sequence Viewer
	NP_001421302	(Get FASTA)	NCBI Sequence Viewer
	NP_001421303	(Get FASTA)	NCBI Sequence Viewer
	NP_001421304	(Get FASTA)	NCBI Sequence Viewer
	XP_006243012	(Get FASTA)	NCBI Sequence Viewer
	XP_006243013	(Get FASTA)	NCBI Sequence Viewer
	XP_006243014	(Get FASTA)	NCBI Sequence Viewer
	XP_006243016	(Get FASTA)	NCBI Sequence Viewer
	XP_017451323	(Get FASTA)	NCBI Sequence Viewer
	XP_063122035	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95329	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000073900
	ENSRNOP00000073900.1

RefSeq Acc Id:

NP_001102762 ⟸ NM_001109292

- UniProtKB:

D3ZD73 (UniProtKB/TrEMBL), A6J406 (UniProtKB/TrEMBL), A0A8I5Y7L2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAA
TIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG
GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF
VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQ
KVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL
CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS
IEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP

hide sequence

RefSeq Acc Id:

XP_006243016 ⟸ XM_006242954

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAA
TIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG
GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF
VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQ
KVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL
CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS
IEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP

hide sequence

RefSeq Acc Id:

XP_006243013 ⟸ XM_006242951

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAA
TIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG
GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF
VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQ
KVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL
CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS
IEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP

hide sequence

RefSeq Acc Id:

XP_006243012 ⟸ XM_006242950

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAA
TIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG
GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF
VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQ
KVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL
CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS
IEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP

hide sequence

RefSeq Acc Id:

XP_006243014 ⟸ XM_006242952

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAA
TIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG
GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF
VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQ
KVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL
CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS
IEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP

hide sequence

RefSeq Acc Id:

XP_017451323 ⟸ XM_017595834

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAA
TIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG
GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF
VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQ
KVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL
CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS
IEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP

hide sequence

Ensembl Acc Id:

ENSRNOP00000073900 ⟸ ENSRNOT00000077445

RefSeq Acc Id:	XP_063122035 ⟸ XM_063265965
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000077264 ⟸ ENSRNOT00000094720

Protein Domains

DEAD-box RNA helicase Q Helicase ATP-binding Helicase C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZD73-F1-model_v2	AlphaFold	D3ZD73	1-483	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695899

Promoter ID:

EPDNEW_R6422

Type:

initiation region

Name:

Ddx6_1

Description:

DEAD-box helicase 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	48,925,604 - 48,925,664	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564560	AgrOrtholog
BioCyc Gene	G2FUF-30709	BioCyc
Ensembl Genes	ENSRNOG00000053932	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000063092	Ensembl
Ensembl Transcript	ENSRNOT00000077445	ENTREZGENE
	ENSRNOT00000077445.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	DEAD-like_N	UniProtKB/TrEMBL
	DNA/RNA_helicase_C	UniProtKB/TrEMBL
	DNA/RNA_helicase_DEAD/DEAH_N	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	RNA-helicase_DEAD-box_CS	UniProtKB/TrEMBL
	RNA_helicase_DEAD_Q_motif	UniProtKB/TrEMBL
KEGG Report	rno:500988	UniProtKB/TrEMBL
NCBI Gene	500988	ENTREZGENE
PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	UniProtKB/TrEMBL
Pfam	DEAD	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
PhenoGen	Ddx6	PhenoGen
PROSITE	DEAD_ATP_HELICASE	UniProtKB/TrEMBL
	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
	Q_MOTIF	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000053932	RatGTEx
	ENSRNOG00000063092	RatGTEx
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8I5Y7L2	ENTREZGENE
	A6J406	ENTREZGENE, UniProtKB/TrEMBL
	D3ZD73	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-13	Ddx6	DEAD-box helicase 6	Ddx6	DEAD (Asp-Glu-Ala-Asp) box helicase 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-16	Ddx6	DEAD (Asp-Glu-Ala-Asp) box helicase 6	Ddx6	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-05-27	Ddx6	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	RGD1564560	similar to RCK	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1564560	similar to RCK	RGD1564560_predicted	similar to RCK (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564560_predicted	similar to RCK (predicted)	LOC500988	similar to RCK	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500988	similar to RCK			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations