Sybu (syntabulin) - Rat Genome Database

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Gene: Sybu (syntabulin) Rattus norvegicus
Analyze
Symbol: Sybu
Name: syntabulin
RGD ID: 1564335
Description: Enables microtubule binding activity. Involved in several processes, including axonal transport; positive regulation of insulin secretion involved in cellular response to glucose stimulus; and regulation of synaptic activity. Acts upstream of or within regulation of insulin secretion involved in cellular response to glucose stimulus. Located in dense body; microtubule; and vesicle. Orthologous to human SYBU (syntabulin); PARTICIPATES IN mitochondria transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Golgi-localized protein; Golsyn; LOC500865; Ocsyn; RGD1564335; similar to RIKEN cDNA 5730410E15 gene; syntabulin (syntaxin-interacting)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8777,731,662 - 77,833,413 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl777,731,605 - 77,833,686 (-)EnsemblGRCr8
mRatBN7.2775,847,000 - 75,948,919 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,847,003 - 75,948,828 (-)EnsemblmRatBN7.2
Rnor_6.0783,600,614 - 83,670,121 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,600,617 - 83,670,356 (-)Ensemblrn6Rnor6.0
Rnor_5.0783,615,445 - 83,685,901 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4780,551,448 - 80,636,458 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera772,816,778 - 72,887,484 (-)NCBICelera
Cytogenetic Map7q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
dichloroacetic acid  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
gallic acid  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
lead(0)  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
Moniliformin  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (ISO)
paraquat  (EXP)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sunitinib  (ISO)
T-2 toxin  (EXP,ISO)
tamoxifen  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
tributylstannane  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon cytoplasm  (IEA)
cytoplasmic microtubule  (IBA)
dense body  (IDA)
membrane  (IEA)
microtubule  (IDA,IEA,ISO)
mitochondrion  (ISO)
vesicle  (IDA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Syntabulin-kinesin-1 family member 5B-mediated axonal transport contributes to activity-dependent presynaptic assembly. Cai Q, etal., J Neurosci. 2007 Jul 4;27(27):7284-96.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Regulation of mitochondrial transport in neurons. Lin MY and Sheng ZH, Exp Cell Res. 2015 May 15;334(1):35-44. doi: 10.1016/j.yexcr.2015.01.004. Epub 2015 Jan 19.
4. KIF5B motor adaptor syntabulin maintains synaptic transmission in sympathetic neurons. Ma H, etal., J Neurosci. 2009 Oct 14;29(41):13019-29. doi: 10.1523/JNEUROSCI.2517-09.2009.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. The microtubule associated protein syntabulin is required for glucose-stimulated and cAMP-potentiated insulin secretion. Ying Y, etal., FEBS Lett. 2012 Oct 19;586(20):3674-80. doi: 10.1016/j.febslet.2012.08.025. Epub 2012 Sep 6.
Additional References at PubMed
PMID:15459722   PMID:17045436   PMID:26868290   PMID:34800366  


Genomics

Comparative Map Data
Sybu
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8777,731,662 - 77,833,413 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl777,731,605 - 77,833,686 (-)EnsemblGRCr8
mRatBN7.2775,847,000 - 75,948,919 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,847,003 - 75,948,828 (-)EnsemblmRatBN7.2
Rnor_6.0783,600,614 - 83,670,121 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,600,617 - 83,670,356 (-)Ensemblrn6Rnor6.0
Rnor_5.0783,615,445 - 83,685,901 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4780,551,448 - 80,636,458 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera772,816,778 - 72,887,484 (-)NCBICelera
Cytogenetic Map7q31NCBI
SYBU
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388109,573,978 - 109,691,600 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8109,573,978 - 109,691,791 (-)Ensemblhg38GRCh38
GRCh378110,586,207 - 110,703,829 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368110,655,581 - 110,773,196 (-)NCBIBuild 36Build 36hg18NCBI36
Celera8106,773,801 - 106,891,437 (-)NCBICelera
Cytogenetic Map8q23.2NCBI
HuRef8105,908,387 - 106,025,974 (-)NCBIHuRef
CHM1_18110,626,649 - 110,744,269 (-)NCBICHM1_1
T2T-CHM13v2.08110,702,563 - 110,820,184 (-)NCBIT2T-CHM13v2.0
Sybu
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391544,535,252 - 44,651,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1544,535,252 - 44,651,459 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381544,671,856 - 44,788,070 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1544,671,856 - 44,788,063 (-)Ensemblmm10GRCm38
MGSCv371544,503,402 - 44,619,609 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361544,501,930 - 44,618,137 (-)NCBIMGSCv36mm8
Celera1545,123,907 - 45,239,526 (-)NCBICelera
Cytogenetic Map15B3.2NCBI
cM Map1516.91NCBI
Sybu
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541716,971,394 - 17,036,940 (-)Ensembl
ChiLan1.0NW_00495541716,971,394 - 17,036,925 (-)NCBIChiLan1.0ChiLan1.0
SYBU
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27126,948,878 - 127,066,430 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18102,469,864 - 102,587,403 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08106,223,046 - 106,340,418 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18108,368,117 - 108,436,570 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8108,368,117 - 108,483,927 (-)EnsemblpanPan2panpan1.1
SYBU
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11310,110,183 - 10,179,514 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1310,111,091 - 10,180,056 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1310,100,830 - 10,209,568 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01310,391,898 - 10,465,693 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1310,391,905 - 10,501,668 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11310,133,302 - 10,242,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01310,250,505 - 10,324,527 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01310,340,031 - 10,448,908 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sybu
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530327,906,164 - 28,012,831 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647035,332,452 - 35,438,204 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647035,332,243 - 35,439,095 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYBU
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl427,901,097 - 27,974,660 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1427,899,264 - 27,975,389 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2430,103,738 - 30,217,060 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYBU
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18104,274,092 - 104,390,051 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8104,273,217 - 104,344,348 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603936,184,560 - 36,300,374 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sybu
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247638,657,285 - 8,766,586 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247638,657,276 - 8,742,161 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sybu
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11219,167,785 - 219,238,680 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sybu
1424 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:474
Count of miRNA genes:218
Interacting mature miRNAs:272
Transcripts:ENSRNOT00000005584, ENSRNOT00000073442
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
D7Uwm14  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8777,796,465 - 77,796,586 (+)Marker Load Pipeline
mRatBN7.2775,911,804 - 75,911,927 (+)MAPPERmRatBN7.2
Rnor_6.0783,664,426 - 83,664,546NCBIRnor6.0
Rnor_5.0783,680,214 - 83,680,334UniSTSRnor5.0
RGSC_v3.4780,630,782 - 80,630,902UniSTSRGSC3.4
RGSC_v3.4780,630,781 - 80,630,902RGDRGSC3.4
Celera772,881,788 - 72,881,909UniSTS
Cytogenetic Map7q31UniSTS
BE113572  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2775,915,780 - 75,915,955 (+)MAPPERmRatBN7.2
Rnor_6.0783,668,400 - 83,668,574NCBIRnor6.0
Rnor_5.0783,684,188 - 83,684,362UniSTSRnor5.0
RGSC_v3.4780,634,756 - 80,634,930UniSTSRGSC3.4
Celera772,885,763 - 72,885,937UniSTS
RH 3.4 Map7525.5UniSTS
Cytogenetic Map7q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 61 159 85 84 53 70 53 6 319 164 11 138 78 91 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005584   ⟹   ENSRNOP00000005584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl777,731,662 - 77,802,194 (-)Ensembl
mRatBN7.2 Ensembl775,847,003 - 75,948,587 (-)Ensembl
Rnor_6.0 Ensembl783,600,617 - 83,670,356 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096897   ⟹   ENSRNOP00000078572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl777,731,662 - 77,833,197 (-)Ensembl
mRatBN7.2 Ensembl775,847,003 - 75,948,538 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105901   ⟹   ENSRNOP00000097171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl777,731,662 - 77,802,171 (-)Ensembl
mRatBN7.2 Ensembl775,847,003 - 75,948,587 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111430   ⟹   ENSRNOP00000085889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl777,731,662 - 77,833,686 (-)Ensembl
mRatBN7.2 Ensembl775,847,003 - 75,948,828 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000129690   ⟹   ENSRNOP00000106185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl777,731,605 - 77,802,153 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000151403   ⟹   ENSRNOP00000107368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl777,731,662 - 77,799,055 (-)Ensembl
RefSeq Acc Id: NM_001427665   ⟹   NP_001414594
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,798,297 (-)NCBI
RefSeq Acc Id: XM_006241616   ⟹   XP_006241678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,802,171 (-)NCBI
mRatBN7.2775,847,000 - 75,917,512 (-)NCBI
Rnor_6.0783,600,614 - 83,670,121 (-)NCBI
Rnor_5.0783,615,445 - 83,685,901 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241617   ⟹   XP_006241679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,802,082 (-)NCBI
mRatBN7.2775,847,000 - 75,917,512 (-)NCBI
Rnor_6.0783,600,614 - 83,670,121 (-)NCBI
Rnor_5.0783,615,445 - 83,685,901 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080175   ⟹   XP_038936103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,833,412 (-)NCBI
mRatBN7.2775,847,000 - 75,948,919 (-)NCBI
RefSeq Acc Id: XM_039080176   ⟹   XP_038936104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,802,171 (-)NCBI
mRatBN7.2775,847,000 - 75,917,512 (-)NCBI
RefSeq Acc Id: XM_039080178   ⟹   XP_038936106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,771,230 (-)NCBI
mRatBN7.2775,847,000 - 75,886,505 (-)NCBI
RefSeq Acc Id: XM_039080180   ⟹   XP_038936108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,771,237 (-)NCBI
mRatBN7.2775,847,000 - 75,886,507 (-)NCBI
RefSeq Acc Id: XM_039080181   ⟹   XP_038936109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,771,496 (-)NCBI
mRatBN7.2775,847,000 - 75,886,829 (-)NCBI
RefSeq Acc Id: XM_039080182   ⟹   XP_038936110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,771,229 (-)NCBI
mRatBN7.2775,847,000 - 75,886,507 (-)NCBI
RefSeq Acc Id: XM_039080183   ⟹   XP_038936111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,771,229 (-)NCBI
mRatBN7.2775,847,000 - 75,886,507 (-)NCBI
RefSeq Acc Id: XM_063264115   ⟹   XP_063120185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,802,172 (-)NCBI
RefSeq Acc Id: XM_063264116   ⟹   XP_063120186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,802,171 (-)NCBI
RefSeq Acc Id: XM_063264117   ⟹   XP_063120187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,802,171 (-)NCBI
RefSeq Acc Id: XM_063264118   ⟹   XP_063120188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,833,301 (-)NCBI
RefSeq Acc Id: XM_063264119   ⟹   XP_063120189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,731,662 - 77,833,413 (-)NCBI
RefSeq Acc Id: XP_006241679   ⟸   XM_006241617
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZLI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241678   ⟸   XM_006241616
- Peptide Label: isoform X4
- UniProtKB: A6HRC1 (UniProtKB/TrEMBL),   A0A8I5ZLI6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005584   ⟸   ENSRNOT00000005584
RefSeq Acc Id: XP_038936103   ⟸   XM_039080175
- Peptide Label: isoform X4
- UniProtKB: A6HRC1 (UniProtKB/TrEMBL),   A0A8I5ZLI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936104   ⟸   XM_039080176
- Peptide Label: isoform X6
- UniProtKB: F1LUC0 (UniProtKB/TrEMBL),   A0A8I5ZLI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936109   ⟸   XM_039080181
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038936111   ⟸   XM_039080183
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038936110   ⟸   XM_039080182
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038936108   ⟸   XM_039080180
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZLI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936106   ⟸   XM_039080178
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZLI6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000078572   ⟸   ENSRNOT00000096897
Ensembl Acc Id: ENSRNOP00000097171   ⟸   ENSRNOT00000105901
Ensembl Acc Id: ENSRNOP00000085889   ⟸   ENSRNOT00000111430
RefSeq Acc Id: XP_063120189   ⟸   XM_063264119
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZLI6 (UniProtKB/TrEMBL),   F1LUC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120188   ⟸   XM_063264118
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZLI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120185   ⟸   XM_063264115
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A508 (UniProtKB/TrEMBL),   A0A8I6AS68 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120186   ⟸   XM_063264116
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A508 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120187   ⟸   XM_063264117
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A508 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414594   ⟸   NM_001427665
- UniProtKB: A0A8I5ZLI6 (UniProtKB/TrEMBL),   A6HRC1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000106185   ⟸   ENSRNOT00000129690
Ensembl Acc Id: ENSRNOP00000107368   ⟸   ENSRNOT00000151403

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LUC0-F1-model_v2 AlphaFold F1LUC0 1-665 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564335 AgrOrtholog
BioCyc Gene G2FUF-33477 BioCyc
Ensembl Genes ENSRNOG00000004200 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005584 ENTREZGENE
  ENSRNOT00000005584.10 UniProtKB/TrEMBL
  ENSRNOT00000096897 ENTREZGENE
  ENSRNOT00000096897.2 UniProtKB/TrEMBL
  ENSRNOT00000105901 ENTREZGENE
  ENSRNOT00000105901.2 UniProtKB/TrEMBL
  ENSRNOT00000111430 ENTREZGENE
  ENSRNOT00000111430.2 UniProtKB/TrEMBL
  ENSRNOT00000129690 ENTREZGENE
  ENSRNOT00000129690.1 UniProtKB/TrEMBL
  ENSRNOT00000151403 ENTREZGENE
  ENSRNOT00000151403.1 UniProtKB/TrEMBL
InterPro Syntaphilin/Syntabulin UniProtKB/TrEMBL
KEGG Report rno:500865 UniProtKB/TrEMBL
NCBI Gene 500865 ENTREZGENE
PANTHER MICROTUBULE-ASSOCIATED PROTEIN/SYNTAPHILIN UniProtKB/TrEMBL
  PTHR16208:SF4 UniProtKB/TrEMBL
Pfam Syntaphilin UniProtKB/TrEMBL
PhenoGen Sybu PhenoGen
RatGTEx ENSRNOG00000004200 RatGTEx
UniProt A0A8I5ZLI6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A508 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AS68 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LNQ1_RAT UniProtKB/TrEMBL
  A0ABK0LVC2_RAT UniProtKB/TrEMBL
  A6HRC1 ENTREZGENE, UniProtKB/TrEMBL
  F1LUC0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-11 Sybu  syntabulin  Sybu  syntabulin (syntaxin-interacting)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-02 Sybu  syntabulin (syntaxin-interacting)  Golsyn  Golgi-localized protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Golsyn  Golgi-localized protein  RGD1564335_predicted  similar to RIKEN cDNA 5730410E15 gene (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564335_predicted  similar to RIKEN cDNA 5730410E15 gene (predicted)  LOC500865  similar to RIKEN cDNA 5730410E15 gene  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500865  similar to RIKEN cDNA 5730410E15 gene      Symbol and Name status set to provisional 70820 PROVISIONAL