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Gene: Clvs1 (clavesin 1) Rattus norvegicus

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Symbol:

Clvs1

Name:

clavesin 1

RGD ID:

1564200

Description:

Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity. Involved in lysosome organization. Located in clathrin-coated vesicle and trans-Golgi network. Orthologous to human CLVS1 (clavesin 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

clavesin-1; hypothetical protein LOC366311; LOC366311; retinaldehyde-binding protein 1-like 1; Retinaldehyde-binding protein 1-like protein 1; RGD1564200; Rlbp1l1; similar to hypothetical protein MGC34646

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CLVS1 (clavesin 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther
Mus musculus (house mouse):	Clvs1 (clavesin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Clvs1 (clavesin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CLVS1 (clavesin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CLVS1 (clavesin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Clvs1 (clavesin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CLVS1 (clavesin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CLVS1 (clavesin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Clvs1 (clavesin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Clvs1 (clavesin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CLVS2 (clavesin 2)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	CLVS1 (clavesin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Clvs1 (clavesin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10657	Alliance	DIOPT (InParanoid\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Cralbp	Alliance	DIOPT (InParanoid\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	clvs1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	clvs1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	PDR17	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	PDR16	Alliance	DIOPT (Ensembl Compara\|Hieranoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	27,107,255 - 27,401,649 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	27,205,751 - 27,401,638 (+)	Ensembl				GRCr8
mRatBN7.2	5	22,408,384 - 22,604,281 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	22,408,384 - 22,604,270 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	24,638,301 - 24,832,299 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	26,228,396 - 26,424,268 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	26,008,667 - 26,204,555 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	22,380,318 - 22,580,391 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	22,380,334 - 22,578,297 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	27,115,709 - 27,312,485 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	23,135,749 - 23,336,357 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	21,664,843 - 21,859,477 (+)	NCBI		Celera
Cytogenetic Map	5	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

clofibrate (ISO)

Cuprizon (EXP)

dorsomorphin (ISO)

ethanol (ISO)

FR900359 (ISO)

fulvestrant (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

SB 431542 (ISO)

sodium arsenite (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lysosome organization (IBA,IEA,IMP)

Cellular Component

clathrin-coated vesicle (IBA,IDA,IEA)

cytoplasmic vesicle (IEA)

early endosome membrane (IEA)

endosome (IBA,IEA,ISO,ISS)

Golgi apparatus (IEA)

trans-Golgi network (IBA,IDA)

Molecular Function

lipid binding (IEA)

phosphatidylinositol bisphosphate binding (IBA)

phosphatidylinositol-3,5-bisphosphate binding (IEA,ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	The clavesin family, neuron-specific lipid- and clathrin-binding Sec14 proteins regulating lysosomal morphology.	Katoh Y, etal., J Biol Chem. 2009 Oct 2;284(40):27646-54. doi: 10.1074/jbc.M109.034884. Epub 2009 Aug 3.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Clvs1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	27,107,255 - 27,401,649 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	27,205,751 - 27,401,638 (+)	Ensembl				GRCr8
mRatBN7.2	5	22,408,384 - 22,604,281 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	22,408,384 - 22,604,270 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	24,638,301 - 24,832,299 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	26,228,396 - 26,424,268 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	26,008,667 - 26,204,555 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	22,380,318 - 22,580,391 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	22,380,334 - 22,578,297 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	27,115,709 - 27,312,485 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	23,135,749 - 23,336,357 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	21,664,843 - 21,859,477 (+)	NCBI		Celera
Cytogenetic Map	5	q13	NCBI

CLVS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	60,964,848 - 61,501,629 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	61,057,158 - 61,501,645 (+)	Ensembl			hg38	GRCh38
GRCh37	8	62,200,529 - 62,414,188 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	62,363,104 - 62,576,758 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	58,190,369 - 58,404,047 (+)	NCBI		Celera
Cytogenetic Map	8	q12.2-q12.3	NCBI
HuRef	8	57,688,952 - 57,902,676 (+)	NCBI		HuRef
CHM1_1	8	62,252,500 - 62,466,191 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	61,388,616 - 61,925,370 (+)	NCBI		T2T-CHM13v2.0

Clvs1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	9,144,753 - 9,451,691 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	9,269,293 - 9,451,691 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	9,144,745 - 9,451,691 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	9,269,293 - 9,451,691 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	9,196,464 - 9,378,838 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	9,196,509 - 9,378,838 (+)	NCBI		MGSCv36	mm8
Celera	4	9,108,545 - 9,292,342 (+)	NCBI		Celera
Cytogenetic Map	4	A1	NCBI
cM Map	4	4.07	NCBI

Clvs1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955444	17,319,905 - 17,515,421 (-)	Ensembl
ChiLan1.0	NW_004955444	17,319,905 - 17,515,397 (-)	NCBI	ChiLan1.0	ChiLan1.0

CLVS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	76,940,026 - 77,156,897 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	52,599,254 - 52,816,033 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	57,703,459 - 57,921,997 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	59,414,746 - 59,630,784 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	59,252,291 - 59,630,784 (+)	Ensembl			panPan2	panpan1.1

CLVS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	11,638,550 - 11,811,853 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	11,638,024 - 11,812,396 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	11,953,510 - 12,128,291 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	11,734,430 - 11,909,539 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	11,734,483 - 11,909,548 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	11,726,549 - 11,901,504 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	11,863,231 - 12,037,919 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	12,133,085 - 12,308,297 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Clvs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	62,777,239 - 62,970,859 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936496	11,812,646 - 12,008,355 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936496	11,814,627 - 12,008,233 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLVS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	72,105,972 - 72,257,226 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	72,104,521 - 72,257,259 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	78,504,691 - 78,655,974 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLVS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	57,174,083 - 57,378,424 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	57,174,291 - 57,380,412 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	84,271,844 - 84,482,024 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Clvs1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624744	30,424,917 - 30,786,645 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624744	30,423,605 - 30,680,264 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Clvs1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	134,073,745 - 134,260,501 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Clvs1
1973 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	893
Count of miRNA genes:	317
Interacting mature miRNAs:	405
Transcripts:	ENSRNOT00000009744
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293666	Bmd38	Bone mineral density QTL 38	4.4		femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	5	13731153	43590997	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	8627230	52665523	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	14606078	59606078	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	17576633	62576633	Rat
1578774	Tcas8	Tongue tumor susceptibility QTL 8	3.47		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	15707451	60707451	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
2312562	Pur18	Proteinuria QTL 18	2.6	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	5	6922282	37468560	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	17486080	62486080	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2303577	Gluco47	Glucose level QTL 47	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	16520019	61520019	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	17486080	62486080	Rat
2313085	Bss59	Bone structure and strength QTL 59	2.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	5	8627230	53627230	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat

Markers in Region

D5Rat209

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	22,509,847 - 22,510,074 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	22,509,722 - 22,510,074 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	22,481,786 - 22,482,014	NCBI	Rnor6.0
Rnor_6.0	5	22,481,610 - 22,482,014	NCBI	Rnor6.0
Rnor_5.0	5	27,215,662 - 27,215,890	UniSTS	Rnor5.0
Rnor_5.0	5	27,215,486 - 27,215,890	UniSTS	Rnor5.0
RGSC_v3.4	5	23,240,869 - 23,241,097	UniSTS	RGSC3.4
RGSC_v3.4	5	23,240,868 - 23,241,097	RGD	RGSC3.4
Celera	5	21,766,907 - 21,767,135	UniSTS
RGSC_v3.1	5	23,240,850 - 23,241,219	RGD
FHH x ACI Map	5	6.59	UniSTS
FHH x ACI Map	5	6.59	RGD
Cytogenetic Map	5	q13	UniSTS

RH134214

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	22,603,238 - 22,603,419 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	22,579,349 - 22,579,529	NCBI	Rnor6.0
Rnor_5.0	5	27,311,454 - 27,311,634	UniSTS	Rnor5.0
RGSC_v3.4	5	23,335,326 - 23,335,506	UniSTS	RGSC3.4
Celera	5	21,858,446 - 21,858,626	UniSTS
RH 3.4 Map	5	130.4	UniSTS
Cytogenetic Map	5	q13	UniSTS

RH133813

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	22,604,000 - 22,604,192 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	22,580,111 - 22,580,302	NCBI	Rnor6.0
Rnor_5.0	5	27,312,216 - 27,312,407	UniSTS	Rnor5.0
RGSC_v3.4	5	23,336,088 - 23,336,279	UniSTS	RGSC3.4
Celera	5	21,859,208 - 21,859,399	UniSTS
RH 3.4 Map	5	119.4	UniSTS
Cytogenetic Map	5	q13	UniSTS

RH142849

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	22,508,169 - 22,508,329 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	22,479,932 - 22,480,091	NCBI	Rnor6.0
Rnor_5.0	5	27,213,808 - 27,213,967	UniSTS	Rnor5.0
RGSC_v3.4	5	23,239,191 - 23,239,350	UniSTS	RGSC3.4
Celera	5	21,765,229 - 21,765,388	UniSTS
RH 3.4 Map	5	131.2	UniSTS
Cytogenetic Map	5	q13	UniSTS

RH139730

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	22,604,139 - 22,604,344 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	22,580,250 - 22,580,454	NCBI	Rnor6.0
Rnor_5.0	5	27,312,355 - 27,312,559	UniSTS	Rnor5.0
RGSC_v3.4	5	23,336,227 - 23,336,431	UniSTS	RGSC3.4
Celera	5	21,859,347 - 21,859,551	UniSTS
RH 3.4 Map	5	130.8	UniSTS
Cytogenetic Map	5	q13	UniSTS

RH141951

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	22,505,861 - 22,506,074 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	22,477,626 - 22,477,838	NCBI	Rnor6.0
Rnor_5.0	5	27,211,502 - 27,211,714	UniSTS	Rnor5.0
RGSC_v3.4	5	23,236,884 - 23,237,096	UniSTS	RGSC3.4
Celera	5	21,762,922 - 21,763,134	UniSTS
RH 3.4 Map	5	115.0	UniSTS
Cytogenetic Map	5	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	5	62	124	48	51	27	18	27	5	186	93	1	112	53	76	24	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009744 ⟹ ENSRNOP00000009744

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	27,205,751 - 27,401,638 (+)	Ensembl
mRatBN7.2 Ensembl	5	22,408,384 - 22,604,270 (+)	Ensembl
Rnor_6.0 Ensembl	5	22,380,334 - 22,578,297 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087182 ⟹ ENSRNOP00000073425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	22,408,384 - 22,601,771 (+)	Ensembl
Rnor_6.0 Ensembl	5	22,392,732 - 22,578,101 (+)	Ensembl

RefSeq Acc Id:

NM_001108969 ⟹ NP_001102439

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	27,205,751 - 27,401,638 (+)	NCBI
mRatBN7.2	5	22,408,384 - 22,604,270 (+)	NCBI
Rnor_6.0	5	22,380,368 - 22,580,380 (+)	NCBI
Rnor_5.0	5	27,115,709 - 27,312,485 (+)	NCBI
RGSC_v3.4	5	23,135,749 - 23,336,357 (+)	RGD
Celera	5	21,664,843 - 21,859,477 (+)	RGD

Sequence:

show sequence

CCAAATCACAGCCCAGTGCAGCCCGGGCTCTCATTCACAGCTTTCTAGAGAAATCTGAGATCCA
ACTGCCAGGGTAGGGGATATCACCCACCCAGTTCAGCCGCGAGGACACCTGCAGAAACACATTC
TCAAAGCAAGCCTGGGCGGCGGTGTGAAGATGACTCTAGCTTGTTTCATTAGCGCCTATGTTTC
TATAACAATGATACCTCCCCCTTCGGTTGGTTGGTGAGAAGATGTTGATCAGGATGTCTAAGAG
CGTGGTGAGTATAGGGATGAATTGGAGGAAGGAGGTACACAAAGAAAGATTCAAGGAATACGGT
AAGCAATGGCTTCGGTTTTCCTTCTCTTTTGGATGGCCACCACCACATAGGGCCTGAATGTCCT
GCTGTTTTCCAAGGACAGAAAGAAGACTCTGTACCTGTCTGTTTGGAGAGCAGTCTTGTAGGAG
AGCCATCGAATGGGCCGCGGATTCAGCACATTTCCATGTGAATGGGACCAGTTTCTGTTCTTCC
CAAACCTCAGAGCATAAGCACTTGGGAAGGAGATTTGGCCAAGATGACACATTTGCAGGCCGGG
CTCAGTCCAGACACGATAGAGAAAGCTCGCCTGGAACTGAATGAAAACCCAGATGTTTTACATC
AGGACATTCAACAGGTCAGAGACATGATCATCACCAGGCCAGACATTGGATTTTTACGTACAGA
TGATGCCTTCATCCTGCGGTTTCTCCGAGCCAGGAAGTTTCACCAAGCCGATGCCTTCAGACTC
CTGGCCCAGTATTTTCAGTACCGCCAGCTAAACCTGGACATGTTCAAAAACTTTAAGGCAGACG
ATCCCGGGATTAAGAGGGCTTTGATCGATGGATTCCCCGGAGTGTTGGAAAATCGTGACCACTA
CGGCAGGAAGATTCTCCTGCTGTTTGCTGCCAATTGGGATCAGAGTAGGAACTCCTTCACAGAC
ATCCTTCGCGCCATTCTCCTGTCCTTGGAAGTCCTTATCGAAGATCCTGAGCTCCAGATAAATG
GTTTCATTTTAATTATAGACTGGAGTAATTTTTCCTTCAAACAAGCCTCCAAGCTGACACCGTC
GATCCTGAAACTGGCCATTGAAGGGCTGCAGGACAGCTTTCCTGCTCGCTTTGGAGGAGTCCAT
TTTGTCAACCAGCCCTGGTACATCCATGCCCTGTACACGCTCATCAAGCCATTCCTCAAAGACA
AGACAAGAAAACGGATTTTCCTACATGGGAACAACTTGAACAGCCTTCACCAGCTAATACACCC
TGAGTTTCTGCCCTCTGAATTTGGAGGAACTCTTCCTCCTTATGACATGGGGACTTGGGCCCGG
ACATTACTTGGCCCTGACTACAGCGATGAAAATGACTATACCCACACTTCCTACAATGCCATGT
ATGTGAAACACACCTGCTCCAACCTGGAGAGAGAGTGCTCGCCCAAGCCCATGAAAAGATCTCA
GTCCGTGGTAGAAGCTGGGACCTTGAAACATGAAGAGAAGGGGGAAAACGAGAACACCCAGCCA
CTGCTGGCTCTGGACTGAGCCAGCATCATGCGACTCCTCCAGTGGAGCAGCCACCTAGCAAGCC
TGTGCCACTGACCTCCAGACATGTGTGCTCTGCTTGATATGACGTCCTCCATTCCAGGCCCAGC
CATGACTGTCAGCAGCCATTGGTCTGGGCAGCCCACACTGGACAAGGATCTGAGAGATGCTTTT
AAAATGTAACTAATTAATTTATGTTTTAGTGAGGGATGGTGGGGGGATGAAGAAAGGCATTTAT
GTAAAAAGGATTCTCCCTCCCCTCCTATTTATGGCAGCAAATCTACTTAAAAAGGGGGGGGGGA
ACCTAAATTAGCCGCATATACATCGCTCTAAGGATTCACACAGGAACTCTCTCCAGGCTTTGCG
AAGTAAGATGAATGCATTCCCAAATAAATACAACAGAGTTAAACTGTGCAGACGTTGTCAGTCA
GCAAGCTTAAAGTAGTCCCGAACCCCAGGCAACTGTAGCTACTATAATTTCCAGTTGTACTGAC
TTATTTTCTGACCTCATCACCAGCATCTAAGTGTGCTCAGCCTAAGGGCGTGATCTCGCAGGTC
TGGCTATTCACAACGTTTTTAATTTACATATCTATCCCGCAAGAATGATTTTGACATCATGGTG
TTTGTCAGGACTTCAGCTGACTTCATGAACCGTGTTTTTTTTTTTTTTTTTAAGAAGACACGGG
GCAGTGTGAAAAGAATGACTGCTTCATCATAACAAAGTGATTTCCTGTAGGCATGGCTACAGAG
AGGAGGCAACTCATTGTGTCATTGTGACTGATGAGTCCATTTAAGTTAGTTCTTGGGTTACTAT
GGCCAAAAAAAAAAAAAAAAAAAAAAAGTGCTAGCAAATAAGTCACTTTGTCCCAACCCTCCCA
TTACCTGTGGAGAAAGGCTCTGAGGGGGCAGGGAGTCAAATCTCACAGGAAGACACTTAAGGAT
GGCTCAGCATGTAAGTACCAAGCTAAAGAGGACCAAGAATGCAAGATGAAATGCCAAAGACAAC
CTATTTCCTTATCCATTCTCCTGAGAAATGGACCCCAGTCCCCACTCAAAGGAAGTCGGAAAAC
ATCATAGGGTAGGATATTTTATCTGTGTCATGTTTCCCAAGGCCAGTTGAGTATACGTAGGTAT
CTTATTCCCTAGCCAACTCTCTGACAAAGACAACACTTACTAATATGACCAGAGTGCTTAATGT
CAAAAATTTTAATTAATAACACTTATTAAAATACTTTACATTTTAAGCATTTGGTAGGTTGACT
TACACCCTAAACATCCTAAAGAAAACAGGAAACCAATTCTACTTACTTCCATCCATAAACACGC
AAACAACATTGCTAATTGTGACCACTTCCTTCTCTTCGTTTCTCTTCTCTTATTCCTGCCCTTT
GCTCTCTTCCTGTCTCCCTTCCTCTATTCCCGCCTCTTCCTCTCTGTCTCTTTCCCTGTTCCTT
CCTACCCTTCTCCTCCTCACCCCTTCTCTTTTTCCTTTGTCTTTCTTTCTCTGTCTCCCTGTTC
CTCTGTCTTCCCTGTATCCCTCCAGTGCTGAAGATCAAACCCAGGACCTTGTCCTGTCAGGCAA
GTGTTCTACCCCTGAGCCCCGAGCTACAGCCTAGATTTATACTCCTTTGTTGATCTACTGTTTT
ATCATTTTTTTTCTACTGGCAGAGAATAGTAACAGAAGCTATTTTTATGTTCCAACCTTGAAGA
AGTAAAATCGAAACAGAATTTAAAGTATTTCCCAAACAATGGCATCATAGTATATAAAATACAC
CAATTCACTTTGTATAGACCTTTTGAATCATAAAATAAGAACCTTCAAAAATATCTACCAAGAC
ATGGATGGAAATTCTTTTCTTATGACACAAGAGAAAGGAAAAATTAAAGTGAATTGGAAAATTG
TTTATTGCTTGTGTTTATAAGATAAACGTGGGATCCAAGTACTCAAAATGCTGTTGGAGTCAGT
TACTGCCAACACTTGTAATAGTAATGGTACTTCTGGCTTTTCACAAGGCAATATTTAGAATCCT
GCTGTAATGACCATATTTTAAAAAACATGTTATAATTACTAAGTTAAAAGCTAATTTTCACTCA
TTTCTACCATTTTATTACATGAATGTAAGGTGATAGTTTAACAATGAGAACATATGGTTTGCAT
TTCGTTATGTGTATGTAATATATAGGAGAACCAAACCCAGCAGGTAACCAAGGGTTACTTCATG
AACACTGGATTGAATTGCCTTTTGTCAGTGAGTTCCTCTGTTTAATAAATATTGAAG

hide sequence

RefSeq Acc Id:

XM_017593530 ⟹ XP_017449019

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	27,205,767 - 27,401,649 (+)	NCBI
mRatBN7.2	5	22,408,397 - 22,604,281 (+)	NCBI
Rnor_6.0	5	22,380,318 - 22,580,391 (+)	NCBI

Sequence:

show sequence

AGCCAGGCTTGGTATAGAAGGACAGAGTCTCTGGCGCACACGCCTCCTACCCAAATCACAGCCC
AGTGCAGCCCGGGCTCTCATTCACAGCTTTCTAGAGAAATCTGAGATCCAACTGCCAGGGTAGG
GGATATCACCCACCCAGTTCAGCCGCGAGGACACCTGCAGAAACACATTCTCAAAGCAAGCCTG
GGCGGCGGTGTGAAGTAAGCAATGGCTTCGGTTTTCCTTCTCTTTTGGATGGCCACCACCACAT
AGGGCCTGAATGTCCTGCTGTTTTCCAAGGACAGAAAGAAGACTCTGTACCTGTCTGTTTGGAG
AGCAGTCTTGTAGGAGAGCCATCGAATGGGCCGCGGATTCAGCACATTTCCATGTGAATGGGAC
CAGTTTCTGTCTTCCCAAACCTCAGAGCATAACCACTTGGAAGGAGATTTGCCAAGATGACACA
TTTGCAGGCCGGGCTCAGTCCAGACACGATAGAGAAAGCTCGCCTGGAACTGAATGAAAACCCA
GATGTTTTACATCAGGACATTCAACAGGTCAGAGACATGATCATCACCAGGCCAGACATTGGAT
TTTTACGTACAGATGATGCCTTCATCCTGCGGTTTCTCCGAGCCAGGAAGTTTCACCAAGCCGA
TGCCTTCAGACTCCTGGCCCAGTATTTTCAGTACCGCCAGCTAAACCTGGACATGTTCAAAAAC
TTTAAGGCAGACGATCCCGGGATTAAGAGGGCTTTGATCGATGGATTCCCCGGAGTGTTGGAAA
ATCGTGACCACTACGGCAGGAAGATTCTCCTGCTGTTTGCTGCCAATTGGGATCAGAGTAGGAA
CTCCTTCACAGACATCCTTCGCGCCATTCTCCTGTCCTTGGAAGTCCTTATCGAAGATCCTGAG
CTCCAGATAAATGGTTTCATTTTAATTATAGACTGGAGTAATTTTTCCTTCAAACAAGCCTCCA
AGCTGACACCGTCGATCCTGAAACTGGCCATTGAAGGGCTGCAGGACAGCTTTCCTGCTCGCTT
TGGAGGAGTCCATTTTGTCAACCAGCCCTGGTACATCCATGCCCTGTACACGCTCATCAAGCCA
TTCCTCAAAGACAAGACAAGAAAACGGATTTTCCTACATGGGAACAACTTGAACAGCCTTCACC
AGCTAATACACCCTGAGTTTCTGCCCTCTGAATTTGGAGGAACTCTTCCTCCTTATGACATGGG
GACTTGGGCCCGGACATTACTTGGCCCTGACTACAGCGATGAAAATGACTATACCCACACTTCC
TACAATGCCATGTATGTGAAACACACCTGCTCCAACCTGGAGAGAGAGTGCTCGCCCAAGCCCA
TGAAAAGATCTCAGTCCGTGGTAGAAGCTGGGACCTTGAAACATGAAGAGAAGGGGGAAAACGA
GAACACCCAGCCACTGCTGGCTCTGGACTGAGCCAGCATCATGCGACTCCTCCAGTGGAGCAGC
CACCTAGCAAGCCTGTGCCACTGACCTCCAGACATGTGTGCTCTGCTTGATATGACGTCCTCCA
TTCCAGGCCCAGCCATGACTGTCAGCAGCCATTGGTCTGGGCAGCCCACACTGGACAAGGATCT
GAGAGATGCTTTTAAAATGTAACTAATTAATTTATGTTTTAGTGAGGGATGGTGGGGGGATGAA
GAAAGGCATTTATGTAAAAAGGATTCTCCCTCCCCTCCTATTTATGGCAGCAAATCTACTTAAA
AAGGGGGGGGGGAACCTAAATTAGCCGCATATACATCGCTCTAAGGATTCACACAGGAACTCTC
TCCAGGCTTTGCGAAGTAAGATGAATGCATTCCCAAATAAATACAACAGAGTTAAACTGTGCAG
ACGTTGTCAGTCAGCAAGCTTAAAGTAGTCCCGAACCCCAGGCAACTGTAGCTACTATAATTTC
CAGTTGTACTGACTTATTTTCTGACCTCATCACCAGCATCTAAGTGTGCTCAGCCTAAGGGCGT
GATCTCGCAGGTCTGGCTATTCACAACGTTTTTAATTTACATATCTATCCCGCAAGAATGATTT
TGACATCATGGTGTTTGTCAGGACTTCAGCTGACTTCATGAACCGTGTTTTTTTTTTTTTTTTT
AAGAAGACACGGGGCAGTGTGAAAAGAATGACTGCTTCATCATAACAAAGTGATTTCCTGTAGG
CATGGCTACAGAGAGGAGGCAACTCATTGTGTCATTGTGACTGATGAGTCCATTTAAGTTAGTT
CTTGGGTTACTATGGCCAAAAAAAAAAAAAAAAAAAAAAAGTGCTAGCAAATAAGTCACTTTGT
CCCAACCCTCCCATTACCTGTGGAGAAAGGCTCTGAGGGGGCAGGGAGTCAAATCTCACAGGAA
GACACTTAAGGATGGCTCAGCATGTAAGTACCAAGCTAAAGAGGACCAAGAATGCAAGATGAAA
TGCCAAAGACAACCTATTTCCTTATCCATTCTCCTGAGAAATGGACCCCAGTCCCCACTCAAAG
GAAGTCGGAAAACATCATAGGGTAGGATATTTTATCTGTGTCATGTTTCCCAAGGCCAGTTGAG
TATACGTAGGTATCTTATTCCCTAGCCAACTCTCTGACAAAGACAACACTTACTAATATGACCA
GAGTGCTTAATGTCAAAAATTTTAATTAATAACACTTATTAAAATACTTTACATTTTAAGCATT
TGGTAGGTTGACTTACACCCTAAACATCCTAAAGAAAACAGGAAACCAATTCTACTTACTTCCA
TCCATAAACACGCAAACAACATTGCTAATTGTGACCACTTCCTTCTCTTCGTTTCTCTTCTCTT
ATTCCTGCCCTTTGCTCTCTTCCTGTCTCCCTTCCTCTATTCCCGCCTCTTCCTCTCTGTCTCT
TTCCCTGTTCCTTCCTACCCTTCTCCTCCTCACCCCTTCTCTTTTTCCTTTGTCTTTCTTTCTC
TGTCTCCCTGTTCCTCTGTCTTCCCTGTATCCCTCCAGTGCTGAAGATCAAACCCAGGACCTTG
TCCTGTCAGGCAAGTGTTCTACCCCTGAGCCCCGAGCTACAGCCTAGATTTATACTCCTTTGTT
GATCTACTGTTTTATCATTTTTTTTCTACTGGCAGAGAATAGTAACAGAAGCTATTTTTATGTT
CCAACCTTGAAGAAGTAAAATCGAAACAGAATTTAAAGTATTTCCCAAACAATGGCATCATAGT
ATATAAAATACACCAATTCACTTTGTATAGACCTTTTGAATCATAAAATAAGAACCTTCAAAAA
TATCTACCAAGACATGGATGGAAATTCTTTTCTTATGACACAAGAGAAAGGAAAAATTAAAGTG
AATTGGAAAATTGTTTATTGCTTGTGTTTATAAGATAAACGTGGGATCCAAGTACTCAAAATGC
TGTTGGAGTCAGTTACTGCCAACACTTGTAATAGTAATGGTACTTCTGGCTTTTCACAAGGCAA
TATTTAGAATCCTGCTGTAATGACCATATTTTAAAAAACATGTTATAATTACTAAGTTAAAAGC
TAATTTTCACTCATTTCTACCATTTTATTACATGAATGTAAGGTGATAGTTTAACAATGAGAAC
ATATGGTTTGCATTTCGTTATGTGTATGTAATATATAGGAGAACCAAACCCAGCAGGTAACCAA
GGGTTACTTCATGAACACTGGATTGAATTGCCTTTTGTCAGTGAGTTCCTCTGTTTAATAAATA
TTGAAGAACACAAATAA

hide sequence

RefSeq Acc Id:

XM_017593531 ⟹ XP_017449020

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	27,206,044 - 27,401,649 (+)	NCBI
mRatBN7.2	5	22,408,677 - 22,603,731 (+)	NCBI
Rnor_6.0	5	22,380,721 - 22,578,946 (+)	NCBI

Sequence:

show sequence

TGCGCTCCCCAGCCATCAGCACCCTATCTCCACCATCGCCGTCATCATCTCCACCACCTCCACC
ACCACCGGCGCGTAAGCAATGGCTTCGGTTTTCCTTCTCTTTTGGATGGCCACCACCACATAGG
GCCTGAATGTCCTGCTGTTTTCCAAGGACAGAAAGAAGACTCTGTACCTGTCTGTTTGGAGAGC
AGTCTTGTAGGAGAGCCATCGAATGGGCCGCGGATTCAGCACATTTCCATGTGAATGGGACCAG
TTTCTGTCTTCCCAAACCTCAGAGCATAACCACTTGGAAGGAGATTTGCCAAGATGACACATTT
GCAGGCCGGGCTCAGTCCAGACACGATAGAGAAAGCTCGCCTGGAACTGAATGAAAACCCAGAT
GTTTTACATCAGGACATTCAACAGGTCAGAGACATGATCATCACCAGGCCAGACATTGGATTTT
TACGTACAGATGATGCCTTCATCCTGCGGTTTCTCCGAGCCAGGAAGTTTCACCAAGCCGATGC
CTTCAGACTCCTGGCCCAGTATTTTCAGTACCGCCAGCTAAACCTGGACATGTTCAAAAACTTT
AAGGCAGACGATCCCGGGATTAAGAGGGCTTTGATCGATGGATTCCCCGGAGTGTTGGAAAATC
GTGACCACTACGGCAGGAAGATTCTCCTGCTGTTTGCTGCCAATTGGGATCAGAGTAGGAACTC
CTTCACAGACATCCTTCGCGCCATTCTCCTGTCCTTGGAAGTCCTTATCGAAGATCCTGAGCTC
CAGATAAATGGTTTCATTTTAATTATAGACTGGAGTAATTTTTCCTTCAAACAAGCCTCCAAGC
TGACACCGTCGATCCTGAAACTGGCCATTGAAGGGCTGCAGGACAGCTTTCCTGCTCGCTTTGG
AGGAGTCCATTTTGTCAACCAGCCCTGGTACATCCATGCCCTGTACACGCTCATCAAGCCATTC
CTCAAAGACAAGACAAGAAAACGGATTTTCCTACATGGGAACAACTTGAACAGCCTTCACCAGC
TAATACACCCTGAGTTTCTGCCCTCTGAATTTGGAGGAACTCTTCCTCCTTATGACATGGGGAC
TTGGGCCCGGACATTACTTGGCCCTGACTACAGCGATGAAAATGACTATACCCACACTTCCTAC
AATGCCATGTATGTGAAACACACCTGCTCCAACCTGGAGAGAGAGTGCTCGCCCAAGCCCATGA
AAAGATCTCAGTCCGTGGTAGAAGCTGGGACCTTGAAACATGAAGAGAAGGGGGAAAACGAGAA
CACCCAGCCACTGCTGGCTCTGGACTGAGCCAGCATCATGCGACTCCTCCAGTGGAGCAGCCAC
CTAGCAAGCCTGTGCCACTGACCTCCAGACATGTGTGCTCTGCTTGATATGACGTCCTCCATTC
CAGGCCCAGCCATGACTGTCAGCAGCCATTGGTCTGGGCAGCCCACACTGGACAAGGATCTGAG
AGATGCTTTTAAAATGTAACTAATTAATTTATGTTTTAGTGAGGGATGGTGGGGGGATGAAGAA
AGGCATTTATGTAAAAAGGATTCTCCCTCCCCTCCTATTTATGGCAGCAAATCTACTTAAAAAG
GGGGGGGGGAACCTAAATTAGCCGCATATACATCGCTCTAAGGATTCACACAGGAACTCTCTCC
AGGCTTTGCGAAGTAAGATGAATGCATTCCCAAATAAATACAACAGAGTTAAACTGTGCAGACG
TTGTCAGTCAGCAAGCTTAAAGTAGTCCCGAACCCCAGGCAACTGTAGCTACTATAATTTCCAG
TTGTACTGACTTATTTTCTGACCTCATCACCAGCATCTAAGTGTGCTCAGCCTAAGGGCGTGAT
CTCGCAGGTCTGGCTATTCACAACGTTTTTAATTTACATATCTATCCCGCAAGAATGATTTTGA
CATCATGGTGTTTGTCAGGACTTCAGCTGACTTCATGAACCGTGTTTTTTTTTTTTTTTTTAAG
AAGACACGGGGCAGTGTGAAAAGAATGACTGCTTCATCATAACAAAGTGATTTCCTGTAGGCAT
GGCTACAGAGAGGAGGCAACTCATTGTGTCATTGTGACTGATGAGTCCATTTAAGTTAGTTCTT
GGGTTACTATGGCCAAAAAAAAAAAAAAAAAAAAAAAGTGC

hide sequence

RefSeq Acc Id:

XM_063288101 ⟹ XP_063144171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	27,107,264 - 27,401,649 (+)	NCBI

RefSeq Acc Id:

XM_063288102 ⟹ XP_063144172

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	27,175,292 - 27,401,649 (+)	NCBI

RefSeq Acc Id:

XM_063288103 ⟹ XP_063144173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	27,107,255 - 27,401,649 (+)	NCBI

RefSeq Acc Id:

XM_063288104 ⟹ XP_063144174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	27,175,292 - 27,401,649 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102439	(Get FASTA)	NCBI Sequence Viewer
	NP_001415617	(Get FASTA)	NCBI Sequence Viewer
	NP_001415618	(Get FASTA)	NCBI Sequence Viewer
	XP_017449019	(Get FASTA)	NCBI Sequence Viewer
	XP_017449020	(Get FASTA)	NCBI Sequence Viewer
	XP_063144171	(Get FASTA)	NCBI Sequence Viewer
	XP_063144172	(Get FASTA)	NCBI Sequence Viewer
	XP_063144173	(Get FASTA)	NCBI Sequence Viewer
	XP_063144174	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A6JFQ6	(Get FASTA)	NCBI Sequence Viewer
	EDM11652	(Get FASTA)	NCBI Sequence Viewer
	EDM11654	(Get FASTA)	NCBI Sequence Viewer
	EDM11655	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009744
	ENSRNOP00000009744.6

RefSeq Acc Id:

NP_001102439 ⟸ NM_001108969

- UniProtKB:

A6JFQ6 (UniProtKB/Swiss-Prot), A6JFQ7 (UniProtKB/TrEMBL), F1LRF3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGPVSVLPKPQSISTWEGDLAKMTHLQAGLSPDTIEKARLELNENPDVLHQDIQQVRDMIITRP
DIGFLRTDDAFILRFLRARKFHQADAFRLLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPG
VLENRDHYGRKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFK
QASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLN
SLHQLIHPEFLPSEFGGTLPPYDMGTWARTLLGPDYSDENDYTHTSYNAMYVKHTCSNLERECS
PKPMKRSQSVVEAGTLKHEEKGENENTQPLLALD

hide sequence

RefSeq Acc Id:

XP_017449019 ⟸ XM_017593530

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTHLQAGLSPDTIEKARLELNENPDVLHQDIQQVRDMIITRPDIGFLRTDDAFILRFLRARKFH
QADAFRLLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQ
SRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDSFP
ARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEFLPSEFGGTLPPY
DMGTWARTLLGPDYSDENDYTHTSYNAMYVKHTCSNLERECSPKPMKRSQSVVEAGTLKHEEKG
ENENTQPLLALD

hide sequence

RefSeq Acc Id:

XP_017449020 ⟸ XM_017593531

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTHLQAGLSPDTIEKARLELNENPDVLHQDIQQVRDMIITRPDIGFLRTDDAFILRFLRARKFH
QADAFRLLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQ
SRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQDSFP
ARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEFLPSEFGGTLPPY
DMGTWARTLLGPDYSDENDYTHTSYNAMYVKHTCSNLERECSPKPMKRSQSVVEAGTLKHEEKG
ENENTQPLLALD

hide sequence

Ensembl Acc Id:

ENSRNOP00000073425 ⟸ ENSRNOT00000087182

Ensembl Acc Id:

ENSRNOP00000009744 ⟸ ENSRNOT00000009744

RefSeq Acc Id:	XP_063144173 ⟸ XM_063288103
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063144171 ⟸ XM_063288101
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063144174 ⟸ XM_063288104
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063144172 ⟸ XM_063288102
- Peptide Label:	isoform X1

Protein Domains

CRAL-TRIO

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A6JFQ6-F1-model_v2	AlphaFold	A6JFQ6	1-354	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693557

Promoter ID:

EPDNEW_R4081

Type:

initiation region

Name:

Clvs1_1

Description:

clavesin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	22,380,400 - 22,380,460	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564200	AgrOrtholog
BioCyc Gene	G2FUF-42000	BioCyc
Ensembl Genes	ENSRNOG00000006919	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000009744	ENTREZGENE
	ENSRNOT00000009744.6	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.525.10	UniProtKB/Swiss-Prot
	Alpha-tocopherol transfer	UniProtKB/Swiss-Prot
	N-terminal domain of phosphatidylinositol transfer protein sec14p	UniProtKB/Swiss-Prot
InterPro	CRAL-TRIO_dom	UniProtKB/Swiss-Prot
	CRAL-TRIO_dom_sf	UniProtKB/Swiss-Prot
	CRAL/TRIO_N_dom	UniProtKB/Swiss-Prot
	CRAL/TRIO_N_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:366311	UniProtKB/Swiss-Prot
NCBI Gene	366311	ENTREZGENE
PANTHER	ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED	UniProtKB/Swiss-Prot
	PTHR10174:SF72	UniProtKB/Swiss-Prot
Pfam	CRAL_TRIO	UniProtKB/Swiss-Prot
	CRAL_TRIO_N	UniProtKB/Swiss-Prot
PhenoGen	Clvs1	PhenoGen
PRINTS	CRETINALDHBP	UniProtKB/Swiss-Prot
PROSITE	CRAL_TRIO	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000006919	RatGTEx
SMART	CRAL_TRIO_N	UniProtKB/Swiss-Prot
	SEC14	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF46938	UniProtKB/Swiss-Prot
	SSF52087	UniProtKB/Swiss-Prot
UniProt	A6JFQ6	ENTREZGENE
	A6JFQ7	ENTREZGENE, UniProtKB/TrEMBL
	CLVS1_RAT	UniProtKB/Swiss-Prot
	F1LRF3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	RGD1564200	similar to hypothetical protein MGC34646	RGD1564200_predicted	similar to hypothetical protein MGC34646 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564200_predicted	similar to hypothetical protein MGC34646 (predicted)	LOC366311	similar to hypothetical protein MGC34646	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC366311	similar to hypothetical protein MGC34646			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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