Atp6v1h (ATPase H+ transporting V1 subunit H) - Rat Genome Database

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Gene: Atp6v1h (ATPase H+ transporting V1 subunit H) Rattus norvegicus
Analyze
Symbol: Atp6v1h
Name: ATPase H+ transporting V1 subunit H
RGD ID: 1562450
Description: Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in endocytosis and synaptic vesicle lumen acidification. Is extrinsic component of synaptic vesicle membrane. Orthologous to human ATP6V1H (ATPase H+ transporting V1 subunit H); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H; ATPase, H+ transporting, lysosomal V1 subunit H; CGI-11; SFD; SFDalpha; SFDbeta; V-ATPase H subunit; V-type proton ATPase subunit H; vacuolar ATP synthase subunit H; vacuolar ATPase subunit H; vacuolar proton pump H subunit; VMA13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8519,176,849 - 19,282,516 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl519,176,849 - 19,282,516 (-)EnsemblGRCr8
mRatBN7.2514,379,029 - 14,484,703 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl514,378,257 - 14,537,962 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx516,571,060 - 16,677,083 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0518,182,103 - 18,284,839 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0517,905,754 - 18,011,765 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0514,262,352 - 14,367,898 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl514,262,349 - 14,367,898 (-)Ensemblrn6Rnor6.0
Rnor_5.0519,044,551 - 19,149,940 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4514,578,149 - 14,683,476 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera513,750,922 - 13,855,545 (-)NCBICelera
Cytogenetic Map5q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
Aflatoxin B2 alpha  (ISO)
amitrole  (EXP)
antimycin A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP)
bisphenol AF  (ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
CU-O LINKAGE  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
doxorubicin  (EXP)
ethanol  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hydrogen sulfide  (ISO)
inulin  (ISO)
isoniazide  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
leflunomide  (EXP,ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (ISO)
nefazodone  (EXP)
oligomycin A  (ISO)
osimertinib  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phosgene  (ISO)
pirinixic acid  (ISO)
propiconazole  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
tetrachloromethane  (ISO)
thiram  (ISO)
trichostatin A  (ISO)
trifluoperazine  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
Yessotoxin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Molecular profiling of synaptic vesicle docking sites reveals novel proteins but few differences between glutamatergic and GABAergic synapses. Boyken J, etal., Neuron. 2013 Apr 24;78(2):285-97. doi: 10.1016/j.neuron.2013.02.027.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12032142   PMID:17897319   PMID:19056867   PMID:19199708   PMID:23376485  


Genomics

Comparative Map Data
Atp6v1h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8519,176,849 - 19,282,516 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl519,176,849 - 19,282,516 (-)EnsemblGRCr8
mRatBN7.2514,379,029 - 14,484,703 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl514,378,257 - 14,537,962 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx516,571,060 - 16,677,083 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0518,182,103 - 18,284,839 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0517,905,754 - 18,011,765 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0514,262,352 - 14,367,898 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl514,262,349 - 14,367,898 (-)Ensemblrn6Rnor6.0
Rnor_5.0519,044,551 - 19,149,940 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4514,578,149 - 14,683,476 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera513,750,922 - 13,855,545 (-)NCBICelera
Cytogenetic Map5q12NCBI
ATP6V1H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38853,715,543 - 53,843,245 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl853,715,543 - 53,843,558 (-)Ensemblhg38GRCh38
GRCh37854,628,103 - 54,755,805 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36854,790,668 - 54,918,403 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34854,790,668 - 54,918,100NCBI
Celera850,618,400 - 50,746,017 (-)NCBICelera
Cytogenetic Map8q11.23NCBI
HuRef850,095,831 - 50,223,373 (-)NCBIHuRef
CHM1_1854,679,992 - 54,807,647 (-)NCBICHM1_1
T2T-CHM13v2.0854,092,959 - 54,220,638 (-)NCBIT2T-CHM13v2.0
Atp6v1h
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915,153,201 - 5,233,438 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15,140,241 - 5,232,752 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3815,082,978 - 5,163,213 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15,070,018 - 5,162,529 (+)Ensemblmm10GRCm38
MGSCv3715,073,254 - 5,152,630 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3615,073,254 - 5,152,630 (+)NCBIMGSCv36mm8
Celera15,091,064 - 5,165,861 (+)NCBICelera
Cytogenetic Map1A1NCBI
cM Map11.85NCBI
Atp6v1h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545413,099,432 - 13,213,067 (-)Ensembl
ChiLan1.0NW_00495545413,099,488 - 13,213,018 (-)NCBIChiLan1.0ChiLan1.0
ATP6V1H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2769,364,234 - 69,480,623 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1845,088,917 - 45,205,842 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0850,152,664 - 50,269,290 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1847,532,058 - 47,647,588 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl847,528,972 - 47,647,588 (-)EnsemblpanPan2panpan1.1
ATP6V1H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1295,381,693 - 5,544,062 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl295,260,175 - 5,508,960 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha295,757,217 - 5,919,022 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0295,460,339 - 5,622,315 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl295,339,534 - 5,587,770 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1295,391,991 - 5,557,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0295,601,511 - 5,762,748 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0295,683,983 - 5,845,578 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atp6v1h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530374,035,109 - 74,138,306 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936496646,760 - 750,461 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936496647,171 - 750,369 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl477,211,493 - 77,302,162 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1477,211,493 - 77,269,757 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2484,281,799 - 84,340,043 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1849,809,668 - 49,926,735 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl849,809,580 - 49,926,706 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603992,012,516 - 92,132,542 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v1h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247351,831,597 - 1,961,669 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247351,785,558 - 1,957,103 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Atp6v1h
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11140,400,281 - 140,484,174 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Atp6v1h
1061 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:36
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000065402
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)51373115343590997Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5862723052665523Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51460607859606078Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51757663362576633Rat
1578774Tcas8Tongue tumor susceptibility QTL 83.47tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)51570745160707451Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5692228237468560Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51748608062486080Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)51297048025683802Rat
2303577Gluco47Glucose level QTL 473blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51652001961520019Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)51748608062486080Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5862723053627230Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000065402   ⟹   ENSRNOP00000059400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl519,176,966 - 19,282,516 (-)Ensembl
mRatBN7.2 Ensembl514,379,146 - 14,484,703 (-)Ensembl
Rnor_6.0 Ensembl514,262,467 - 14,367,898 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085654   ⟹   ENSRNOP00000075016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl519,176,849 - 19,271,040 (-)Ensembl
mRatBN7.2 Ensembl514,379,035 - 14,473,176 (-)Ensembl
Rnor_6.0 Ensembl514,262,349 - 14,356,692 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104841   ⟹   ENSRNOP00000083793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl519,196,473 - 19,271,040 (-)Ensembl
mRatBN7.2 Ensembl514,398,657 - 14,473,161 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105349   ⟹   ENSRNOP00000093916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl514,378,257 - 14,537,962 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107603   ⟹   ENSRNOP00000080326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl514,378,257 - 14,473,183 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119212   ⟹   ENSRNOP00000089383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl519,176,849 - 19,271,040 (-)Ensembl
mRatBN7.2 Ensembl514,378,257 - 14,473,183 (-)Ensembl
RefSeq Acc Id: NM_001013929   ⟹   NP_001013951
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,176,965 - 19,282,516 (-)NCBI
mRatBN7.2514,379,145 - 14,484,703 (-)NCBI
Rnor_6.0514,262,466 - 14,367,898 (-)NCBI
Rnor_5.0519,044,551 - 19,149,940 (-)NCBI
RGSC_v3.4514,578,149 - 14,683,476 (-)RGD
Celera513,750,922 - 13,855,545 (-)RGD
Sequence:
RefSeq Acc Id: NM_001398985   ⟹   NP_001385914
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,176,849 - 19,271,040 (-)NCBI
mRatBN7.2514,379,029 - 14,473,227 (-)NCBI
RefSeq Acc Id: NM_001398986   ⟹   NP_001385915
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,176,849 - 19,271,040 (-)NCBI
mRatBN7.2514,379,029 - 14,473,227 (-)NCBI
RefSeq Acc Id: XM_006237802   ⟹   XP_006237864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,176,851 - 19,271,051 (-)NCBI
mRatBN7.2514,379,124 - 14,473,222 (-)NCBI
Rnor_6.0514,262,352 - 14,356,705 (-)NCBI
Rnor_5.0519,044,551 - 19,149,940 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237804   ⟹   XP_006237866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,176,851 - 19,270,995 (-)NCBI
mRatBN7.2514,379,029 - 14,473,223 (-)NCBI
Rnor_6.0514,262,352 - 14,356,705 (-)NCBI
Rnor_5.0519,044,551 - 19,149,940 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763524   ⟹   XP_008761746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,176,851 - 19,269,657 (-)NCBI
mRatBN7.2514,379,029 - 14,473,208 (-)NCBI
Rnor_6.0514,262,352 - 14,355,291 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063287272   ⟹   XP_063143342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,176,851 - 19,271,038 (-)NCBI
RefSeq Acc Id: NP_001013951   ⟸   NM_001013929
- Peptide Label: isoform 2
- UniProtKB: Q5XIL1 (UniProtKB/TrEMBL),   E9PTI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237866   ⟸   XM_006237804
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ACJ2 (UniProtKB/TrEMBL),   A0A8I5ZWI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237864   ⟸   XM_006237802
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQ24 (UniProtKB/TrEMBL),   A6JFI5 (UniProtKB/TrEMBL),   A0A8I5ZWI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761746   ⟸   XM_008763524
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AIG1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075016   ⟸   ENSRNOT00000085654
Ensembl Acc Id: ENSRNOP00000059400   ⟸   ENSRNOT00000065402
Ensembl Acc Id: ENSRNOP00000093916   ⟸   ENSRNOT00000105349
Ensembl Acc Id: ENSRNOP00000089383   ⟸   ENSRNOT00000119212
Ensembl Acc Id: ENSRNOP00000083793   ⟸   ENSRNOT00000104841
Ensembl Acc Id: ENSRNOP00000080326   ⟸   ENSRNOT00000107603
RefSeq Acc Id: NP_001385915   ⟸   NM_001398986
- Peptide Label: isoform 3
- UniProtKB: A0A8I5ZWI2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385914   ⟸   NM_001398985
- Peptide Label: isoform 1
- UniProtKB: A0A8I5ZWI2 (UniProtKB/TrEMBL),   A0A8I5ZQ24 (UniProtKB/TrEMBL),   A6JFI5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143342   ⟸   XM_063287272
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZWI2 (UniProtKB/TrEMBL),   A0A8I6ACJ2 (UniProtKB/TrEMBL)
Protein Domains
Armadillo repeat-containing   ATPase V1 complex subunit H C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K9J2-F1-model_v2 AlphaFold A0A0G2K9J2 1-483 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693552
Promoter ID:EPDNEW_R4066
Type:initiation region
Name:Atp6v1h_1
Description:ATPase H+ transporting V1 subunit H
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0514,356,642 - 14,356,702EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562450 AgrOrtholog
BioCyc Gene G2FUF-42156 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
BioCyc Pathway Image PWY-7980 BioCyc
Ensembl Genes ENSRNOG00000030862 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065402 ENTREZGENE
  ENSRNOT00000065402.3 UniProtKB/TrEMBL
  ENSRNOT00000085654 ENTREZGENE
  ENSRNOT00000085654.3 UniProtKB/TrEMBL
  ENSRNOT00000104841.2 UniProtKB/TrEMBL
  ENSRNOT00000119212 ENTREZGENE
  ENSRNOT00000119212.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  1.25.40.150 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7135583 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/TrEMBL
  ARM-rpt_dom UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  ATPase_V1-cplx_hsu UniProtKB/TrEMBL
  ATPase_V1-cplx_hsu_C UniProtKB/TrEMBL
  ATPase_V1-cplx_hsu_C_sf UniProtKB/TrEMBL
MGC_CLONE MGC:94513 IMAGE-MGC_LOAD
NCBI Gene 297797 ENTREZGENE
PANTHER PTHR10698 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT H UniProtKB/TrEMBL
Pfam Arm_2 UniProtKB/TrEMBL
  V-ATPase_H_C UniProtKB/TrEMBL
  V-ATPase_H_N UniProtKB/TrEMBL
PhenoGen Atp6v1h PhenoGen
PIRSF ATPase_V1_H UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030862 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2K9J2_RAT UniProtKB/TrEMBL
  A0A8I5ZQ24 ENTREZGENE
  A0A8I5ZWI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ACJ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIG1 ENTREZGENE
  A6JFI5 ENTREZGENE, UniProtKB/TrEMBL
  A6JFI6_RAT UniProtKB/TrEMBL
  A6JFI7_RAT UniProtKB/TrEMBL
  E9PTI1 ENTREZGENE, UniProtKB/TrEMBL
  Q5XIL1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Atp6v1h  ATPase H+ transporting V1 subunit H  Atp6v1h  ATPase, H+ transporting, lysosomal V1 subunit H  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-03 Atp6v1h  ATPase, H+ transporting, lysosomal V1 subunit H  Atp6v1h  vacuolar ATPase subunit H  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 Atp6v1h  vacuolar ATPase subunit H      Symbol and Name status set to provisional 70820 PROVISIONAL