Jakmip1 (janus kinase and microtubule interacting protein 1) - Rat Genome Database

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Gene: Jakmip1 (janus kinase and microtubule interacting protein 1) Rattus norvegicus
Analyze
Symbol: Jakmip1
Name: janus kinase and microtubule interacting protein 1
RGD ID: 1562401
Description: Predicted to enable GABA receptor binding activity; RNA binding activity; and kinesin binding activity. Predicted to be involved in cognition. Located in microtubule cytoskeleton. Orthologous to human JAKMIP1 (janus kinase and microtubule interacting protein 1); INTERACTS WITH alpha-Zearalanol; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: janus kinase and microtubule-interacting protein 1; marlin-1; Marlin1; MGC125191; MGC125215; multiple alpha helices and RNA-linker protein 1; multiple coiled-coil GABABR1-binding protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81477,871,034 - 77,991,566 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1477,871,034 - 77,991,525 (-)EnsemblGRCr8
mRatBN7.21473,646,299 - 73,766,830 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,632,428 - 73,713,993 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1478,091,571 - 78,212,116 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,332,443 - 79,452,986 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01475,777,267 - 75,897,937 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,403,448 - 78,523,108 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,424,960 - 78,469,480 (-)Ensemblrn6Rnor6.0
Rnor_5.01478,377,060 - 78,443,092 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41479,234,978 - 79,280,217 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1472,619,482 - 72,664,611 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cognition  (IEA,ISO)
protein transport  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
5. Marlin-1 and conventional kinesin link GABAB receptors to the cytoskeleton and regulate receptor transport. Vidal RL, etal., Mol Cell Neurosci. 2007 Jul;35(3):501-12. Epub 2007 May 1.
Additional References at PubMed
PMID:14718537   PMID:17519220   PMID:17668444   PMID:19386132   PMID:22828129   PMID:26627310  


Genomics

Comparative Map Data
Jakmip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81477,871,034 - 77,991,566 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1477,871,034 - 77,991,525 (-)EnsemblGRCr8
mRatBN7.21473,646,299 - 73,766,830 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,632,428 - 73,713,993 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1478,091,571 - 78,212,116 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,332,443 - 79,452,986 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01475,777,267 - 75,897,937 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,403,448 - 78,523,108 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,424,960 - 78,469,480 (-)Ensemblrn6Rnor6.0
Rnor_5.01478,377,060 - 78,443,092 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41479,234,978 - 79,280,217 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1472,619,482 - 72,664,611 (-)NCBICelera
Cytogenetic Map14q21NCBI
JAKMIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3846,026,199 - 6,200,549 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl46,026,199 - 6,200,591 (-)Ensemblhg38GRCh38
GRCh3746,027,926 - 6,202,276 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3646,078,827 - 6,253,219 (-)NCBIBuild 36Build 36hg18NCBI36
Celera45,926,442 - 6,102,430 (-)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef45,961,566 - 6,050,468 (-)NCBIHuRef
HuRef46,102,359 - 6,135,610 (-)NCBIHuRef
CHM1_146,025,980 - 6,199,980 (-)NCBICHM1_1
T2T-CHM13v2.045,999,090 - 6,174,505 (-)NCBIT2T-CHM13v2.0
Jakmip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39537,182,424 - 37,307,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl537,185,679 - 37,307,951 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38537,025,852 - 37,150,614 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl537,113,784 - 37,117,473 (+)Ensemblmm10GRCm38
GRCm38.p6 Ensembl537,028,335 - 37,150,607 (+)Ensemblmm10GRCm38
MGSCv37537,442,096 - 37,516,537 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36537,339,165 - 37,413,544 (+)NCBIMGSCv36mm8
Celera534,502,607 - 34,577,004 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map519.66NCBI
Jakmip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555143,986,975 - 4,106,129 (+)Ensembl
ChiLan1.0NW_0049555143,987,231 - 4,088,762 (+)NCBIChiLan1.0ChiLan1.0
JAKMIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v236,296,000 - 6,473,090 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan146,224,588 - 6,401,880 (-)NCBINHGRI_mPanPan1
PanPan1.146,100,985 - 6,272,453 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl46,100,985 - 6,191,991 (-)EnsemblpanPan2panpan1.1
JAKMIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1371,202,903 - 71,344,541 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl371,204,244 - 71,344,881 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha373,747,453 - 73,895,031 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0371,964,007 - 72,105,612 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl371,965,152 - 72,105,574 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1371,234,097 - 71,375,652 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0371,397,307 - 71,537,675 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0371,772,785 - 71,920,789 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Jakmip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528564,452,194 - 64,578,562 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647718,151,372 - 18,280,377 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647718,177,288 - 18,280,286 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JAKMIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl84,492,389 - 4,612,204 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.184,472,852 - 4,613,986 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.282,813,165 - 2,855,361 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JAKMIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12742,157,145 - 42,330,117 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2742,167,423 - 42,243,485 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604788,949,803 - 89,123,472 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Jakmip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475522,643,952 - 22,708,804 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475522,638,804 - 22,763,380 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Jakmip1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11168,023,440 - 68,119,358 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Jakmip1
299 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:112
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000006771
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat

Markers in Region
D14Rat43  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81477,914,838 - 77,915,054 (+)Marker Load Pipeline
Rnor_6.01478,446,303 - 78,446,524NCBIRnor6.0
Rnor_5.01478,419,915 - 78,420,136UniSTSRnor5.0
RGSC_v3.41479,256,325 - 79,256,540UniSTSRGSC3.4
RGSC_v3.41479,256,324 - 79,256,540RGDRGSC3.4
Celera1472,640,828 - 72,641,041UniSTS
RGSC_v3.11479,258,715 - 79,258,931RGD
SHRSP x BN Map1440.7299UniSTS
SHRSP x BN Map1440.7299RGD
FHH x ACI Map1456.8699RGD
Cytogenetic Map14q21UniSTS
AI058742  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21473,668,849 - 73,669,041 (+)MAPPERmRatBN7.2
Rnor_6.01478,425,053 - 78,425,244NCBIRnor6.0
Rnor_5.01478,398,665 - 78,398,856UniSTSRnor5.0
RGSC_v3.41479,235,075 - 79,235,266UniSTSRGSC3.4
Celera1472,619,579 - 72,619,770UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 9 54 153 90 89 58 92 58 6 333 173 11 124 79 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC104677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC104718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000006771   ⟹   ENSRNOP00000006771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1477,871,034 - 77,991,525 (-)Ensembl
mRatBN7.2 Ensembl1473,632,428 - 73,713,993 (-)Ensembl
Rnor_6.0 Ensembl1478,424,960 - 78,469,480 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106540   ⟹   ENSRNOP00000084871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1477,871,034 - 77,931,959 (-)Ensembl
mRatBN7.2 Ensembl1473,646,793 - 73,707,222 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000123329   ⟹   ENSRNOP00000111615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1477,893,492 - 77,903,827 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000125060   ⟹   ENSRNOP00000103569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1477,871,034 - 77,991,525 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000150746   ⟹   ENSRNOP00000105142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1477,871,887 - 77,991,525 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000172701   ⟹   ENSRNOP00000107455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1477,871,034 - 77,991,525 (-)Ensembl
RefSeq Acc Id: NM_001033894   ⟹   NP_001029066
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,893,492 - 77,938,730 (-)NCBI
mRatBN7.21473,668,753 - 73,713,993 (-)NCBI
Rnor_6.01478,424,956 - 78,469,480 (-)NCBI
Rnor_5.01478,377,060 - 78,443,092 (-)NCBI
RGSC_v3.41479,234,978 - 79,280,217 (-)RGD
Celera1472,619,482 - 72,664,611 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401057   ⟹   NP_001387986
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,871,034 - 77,991,525 (-)NCBI
mRatBN7.21473,646,299 - 73,766,792 (-)NCBI
RefSeq Acc Id: NM_001401058   ⟹   NP_001387987
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,871,034 - 77,991,525 (-)NCBI
mRatBN7.21473,646,299 - 73,766,792 (-)NCBI
RefSeq Acc Id: NM_001401059   ⟹   NP_001387988
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,871,034 - 77,991,525 (-)NCBI
mRatBN7.21473,646,299 - 73,766,792 (-)NCBI
RefSeq Acc Id: NM_001401060   ⟹   NP_001387989
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,871,034 - 77,991,525 (-)NCBI
mRatBN7.21473,646,299 - 73,766,792 (-)NCBI
RefSeq Acc Id: NM_001401062   ⟹   NP_001387991
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,893,492 - 77,991,525 (-)NCBI
mRatBN7.21473,668,753 - 73,766,792 (-)NCBI
RefSeq Acc Id: XM_017599199   ⟹   XP_017454688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,872,101 - 77,977,191 (-)NCBI
mRatBN7.21473,647,366 - 73,752,530 (-)NCBI
Rnor_6.01478,403,448 - 78,508,680 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599201   ⟹   XP_017454690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,872,101 - 77,991,566 (-)NCBI
mRatBN7.21473,647,366 - 73,766,830 (-)NCBI
Rnor_6.01478,403,448 - 78,523,108 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599204   ⟹   XP_017454693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,872,101 - 77,991,566 (-)NCBI
mRatBN7.21473,647,366 - 73,766,830 (-)NCBI
Rnor_6.01478,403,448 - 78,523,107 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039091948   ⟹   XP_038947876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,872,101 - 77,938,734 (-)NCBI
mRatBN7.21473,647,366 - 73,714,002 (-)NCBI
RefSeq Acc Id: XM_039091949   ⟹   XP_038947877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,872,101 - 77,970,661 (-)NCBI
mRatBN7.21473,647,366 - 73,745,929 (-)NCBI
RefSeq Acc Id: XM_039091951   ⟹   XP_038947879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,872,101 - 77,991,566 (-)NCBI
mRatBN7.21473,647,366 - 73,766,830 (-)NCBI
RefSeq Acc Id: XM_039091952   ⟹   XP_038947880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,872,101 - 77,922,022 (-)NCBI
mRatBN7.21473,647,366 - 73,697,279 (-)NCBI
RefSeq Acc Id: XM_039091953   ⟹   XP_038947881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,872,101 - 77,911,681 (-)NCBI
mRatBN7.21473,647,366 - 73,686,954 (-)NCBI
RefSeq Acc Id: XM_063273143   ⟹   XP_063129213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,872,101 - 77,991,566 (-)NCBI
RefSeq Acc Id: XM_063273144   ⟹   XP_063129214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,872,424 - 77,991,565 (-)NCBI
RefSeq Acc Id: XM_063273146   ⟹   XP_063129216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,872,101 - 77,922,022 (-)NCBI
RefSeq Acc Id: XM_063273147   ⟹   XP_063129217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,893,492 - 77,971,572 (-)NCBI
RefSeq Acc Id: NP_001029066   ⟸   NM_001033894
- Peptide Label: isoform 5
- UniProtKB: Q3SWS9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017454690   ⟸   XM_017599201
- Peptide Label: isoform X3
- UniProtKB: A6IJW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454693   ⟸   XM_017599204
- Peptide Label: isoform X4
- UniProtKB: A6IJW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454688   ⟸   XM_017599199
- Peptide Label: isoform X1
- UniProtKB: A6IJW6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006771   ⟸   ENSRNOT00000006771
RefSeq Acc Id: XP_038947879   ⟸   XM_039091951
- Peptide Label: isoform X2
- UniProtKB: A6IJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947877   ⟸   XM_039091949
- Peptide Label: isoform X1
- UniProtKB: A6IJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947876   ⟸   XM_039091948
- Peptide Label: isoform X1
- UniProtKB: A6IJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947880   ⟸   XM_039091952
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZYV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947881   ⟸   XM_039091953
- Peptide Label: isoform X10
Ensembl Acc Id: ENSRNOP00000084871   ⟸   ENSRNOT00000106540
RefSeq Acc Id: NP_001387987   ⟸   NM_001401058
- Peptide Label: isoform 2
- UniProtKB: A6IJW6 (UniProtKB/TrEMBL),   A0A8L2Q2V8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387989   ⟸   NM_001401060
- Peptide Label: isoform 4
- UniProtKB: A6IJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387988   ⟸   NM_001401059
- Peptide Label: isoform 3
- UniProtKB: A6IJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387986   ⟸   NM_001401057
- Peptide Label: isoform 1
- UniProtKB: A6IJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387991   ⟸   NM_001401062
- Peptide Label: isoform 5
- UniProtKB: Q3SWS9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063129213   ⟸   XM_063273143
- Peptide Label: isoform X5
- UniProtKB: A6IJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129216   ⟸   XM_063273146
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZYV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129214   ⟸   XM_063273144
- Peptide Label: isoform X6
- UniProtKB: A6IJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129217   ⟸   XM_063273147
- Peptide Label: isoform X9
- UniProtKB: Q3SWS9 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000103569   ⟸   ENSRNOT00000125060
Ensembl Acc Id: ENSRNOP00000111615   ⟸   ENSRNOT00000123329
Ensembl Acc Id: ENSRNOP00000107455   ⟸   ENSRNOT00000172701
Ensembl Acc Id: ENSRNOP00000105142   ⟸   ENSRNOT00000150746
Protein Domains
Janus kinase and microtubule-interacting protein C-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3SWS9-F1-model_v2 AlphaFold Q3SWS9 1-626 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562401 AgrOrtholog
BioCyc Gene G2FUF-15352 BioCyc
Ensembl Genes ENSRNOG00000004998 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000006771 ENTREZGENE
  ENSRNOT00000106540 ENTREZGENE
  ENSRNOT00000125060 ENTREZGENE
  ENSRNOT00000150746 ENTREZGENE
  ENSRNOT00000172701 ENTREZGENE
IMAGE_CLONE IMAGE:7381652 IMAGE-MGC_LOAD
  IMAGE:7453460 IMAGE-MGC_LOAD
InterPro JAKMIP UniProtKB/Swiss-Prot
  JAKMIP_C UniProtKB/Swiss-Prot
KEGG Report rno:305434 UniProtKB/Swiss-Prot
MGC_CLONE MGC:125191 IMAGE-MGC_LOAD
  MGC:125215 IMAGE-MGC_LOAD
NCBI Gene 305434 ENTREZGENE
PANTHER JANUS KINASE AND MICROTUBULE-INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR18935 UniProtKB/Swiss-Prot
Pfam JAKMIP_CC3 UniProtKB/Swiss-Prot
PhenoGen Jakmip1 PhenoGen
RatGTEx ENSRNOG00000004998 RatGTEx
UniProt A0A8I5ZYV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q2V8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LG04_RAT UniProtKB/TrEMBL
  A0ABK0LL34_RAT UniProtKB/TrEMBL
  A0ABK0LSG4_RAT UniProtKB/TrEMBL
  A0ABK0LY21_RAT UniProtKB/TrEMBL
  A6IJW6 ENTREZGENE, UniProtKB/TrEMBL
  JKIP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Jakmip1  janus kinase and microtubule interacting protein 1  MGC125215  multiple coiled-coil GABABR1-binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 MGC125215  multiple coiled-coil GABABR1-binding protein      Symbol and Name status set to provisional 70820 PROVISIONAL