Satb2 (SATB homeobox 2) - Rat Genome Database

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Gene: Satb2 (SATB homeobox 2) Rattus norvegicus
Analyze
Symbol: Satb2
Name: SATB homeobox 2
RGD ID: 1562369
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in chromatin remodeling and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including osteoblast development; regulation of transcription by RNA polymerase II; and skeletal system development. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex. Human ortholog(s) of this gene implicated in SATB2-associated syndrome. Orthologous to human SATB2 (SATB homeobox 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DNA-binding protein SATB2; LOC501145; RGD1562369; similar to KIAA1034-like DNA binding protein; special AT-rich sequence binding protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8965,842,351 - 66,028,569 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl965,844,570 - 66,021,238 (-)EnsemblGRCr8
mRatBN7.2958,348,027 - 58,534,256 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl958,350,246 - 58,530,707 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx966,851,232 - 67,028,002 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0971,967,156 - 72,143,935 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0970,285,214 - 70,461,986 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0963,456,877 - 63,642,193 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl963,456,783 - 63,641,400 (-)Ensemblrn6Rnor6.0
Rnor_5.0963,262,569 - 63,445,219 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4955,647,221 - 55,824,683 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera955,813,347 - 55,988,972 (-)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP,ISO)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amosite asbestos  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
chromium atom  (ISO)
cisplatin  (ISO)
clozapine  (ISO)
cocaine  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP,ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
diiodine  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
glycerol 2-phosphate  (ISO)
GW 4064  (ISO)
haloperidol  (ISO)
hypochlorous acid  (ISO)
ketamine  (EXP)
L-ascorbic acid  (ISO)
lead(0)  (ISO)
mercury dibromide  (ISO)
methoxychlor  (EXP)
methylisothiazolinone  (ISO)
mitoxantrone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Satb2 is a postmitotic determinant for upper-layer neuron specification in the neocortex. Britanova O, etal., Neuron. 2008 Feb 7;57(3):378-92. doi: 10.1016/j.neuron.2007.12.028.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15733084   PMID:16751105   PMID:16960803   PMID:18794345   PMID:21123581   PMID:23144223   PMID:23517179   PMID:25239161   PMID:27503378   PMID:29030963   PMID:31378877   PMID:31908011  
PMID:32329823  


Genomics

Comparative Map Data
Satb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8965,842,351 - 66,028,569 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl965,844,570 - 66,021,238 (-)EnsemblGRCr8
mRatBN7.2958,348,027 - 58,534,256 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl958,350,246 - 58,530,707 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx966,851,232 - 67,028,002 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0971,967,156 - 72,143,935 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0970,285,214 - 70,461,986 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0963,456,877 - 63,642,193 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl963,456,783 - 63,641,400 (-)Ensemblrn6Rnor6.0
Rnor_5.0963,262,569 - 63,445,219 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4955,647,221 - 55,824,683 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera955,813,347 - 55,988,972 (-)NCBICelera
Cytogenetic Map9q31NCBI
SATB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382199,269,500 - 199,471,266 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2199,269,484 - 199,471,266 (-)Ensemblhg38GRCh38
GRCh372200,134,223 - 200,335,989 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362199,842,469 - 200,033,446 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342199,959,729 - 200,150,707NCBI
Celera2193,889,754 - 194,091,258 (-)NCBICelera
Cytogenetic Map2q33.1NCBI
HuRef2191,986,953 - 192,188,680 (-)NCBIHuRef
CHM1_12200,140,433 - 200,341,932 (-)NCBICHM1_1
T2T-CHM13v2.02199,753,552 - 199,955,035 (-)NCBIT2T-CHM13v2.0
Satb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39156,833,145 - 57,019,350 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl156,833,140 - 57,017,809 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38156,793,981 - 56,981,190 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl156,793,981 - 56,978,650 (-)Ensemblmm10GRCm38
MGSCv37156,850,825 - 57,028,178 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36156,740,812 - 56,915,879 (-)NCBIMGSCv36mm8
Celera157,309,396 - 57,486,902 (-)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map128.72NCBI
Satb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554031,663,676 - 1,811,109 (+)Ensembl
ChiLan1.0NW_0049554031,663,676 - 1,811,088 (+)NCBIChiLan1.0ChiLan1.0
SATB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213101,887,491 - 102,083,405 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B101,902,495 - 102,098,402 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B86,518,043 - 86,720,212 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B204,408,681 - 204,603,286 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B204,406,887 - 204,599,539 (-)EnsemblpanPan2panpan1.1
SATB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1378,548,295 - 8,837,416 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl378,551,017 - 8,731,149 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha379,435,262 - 9,724,366 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0378,446,518 - 8,736,073 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl378,446,544 - 8,629,216 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1378,437,231 - 8,726,605 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0378,409,230 - 8,698,299 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0378,428,358 - 8,717,903 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Satb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303156,631,640 - 156,803,110 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650634,962 - 206,490 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493650634,968 - 206,432 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SATB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15102,964,417 - 103,158,232 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115102,962,635 - 103,172,224 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215114,023,917 - 114,065,366 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SATB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11084,761,450 - 84,954,339 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1084,761,426 - 84,954,361 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040114,497,881 - 114,689,237 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Satb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248891,321,345 - 1,466,319 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248891,321,323 - 1,466,368 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Satb2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14131,230,727 - 131,414,564 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Satb2
902 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:249
Count of miRNA genes:164
Interacting mature miRNAs:187
Transcripts:ENSRNOT00000049259
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95746049778547958Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat

Markers in Region
RH140688  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2958,528,367 - 58,528,583 (+)MAPPERmRatBN7.2
Rnor_6.0963,639,119 - 63,639,334NCBIRnor6.0
Rnor_5.0963,442,948 - 63,443,163UniSTSRnor5.0
RGSC_v3.4955,827,474 - 55,827,689UniSTSRGSC3.4
RGSC_v3.4955,826,413 - 55,826,628UniSTSRGSC3.4
Celera955,990,414 - 55,990,629UniSTS
RH 3.4 Map9481.2UniSTS
Cytogenetic Map9q31UniSTS
RH80503  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2958,350,121 - 58,350,357 (+)MAPPERmRatBN7.2
Rnor_6.0963,458,971 - 63,459,206NCBIRnor6.0
Rnor_5.0963,264,663 - 63,264,898UniSTSRnor5.0
RGSC_v3.4955,647,097 - 55,647,332UniSTSRGSC3.4
Celera955,813,223 - 55,813,458UniSTS
Cytogenetic Map9q31UniSTS
RH143932  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2958,527,362 - 58,527,485 (+)MAPPERmRatBN7.2
Rnor_6.0963,638,114 - 63,638,236NCBIRnor6.0
Rnor_5.0963,441,943 - 63,442,065UniSTSRnor5.0
RGSC_v3.4955,825,120 - 55,825,242UniSTSRGSC3.4
Celera955,989,409 - 55,989,531UniSTS
RH 3.4 Map9481.3UniSTS
Cytogenetic Map9q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 62 161 89 88 59 34 59 6 293 129 11 140 81 92 29 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000049259   ⟹   ENSRNOP00000044829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl965,844,570 - 66,021,238 (-)Ensembl
mRatBN7.2 Ensembl958,350,246 - 58,526,925 (-)Ensembl
Rnor_6.0 Ensembl963,459,095 - 63,637,677 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087684   ⟹   ENSRNOP00000071049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl965,844,570 - 66,019,733 (-)Ensembl
mRatBN7.2 Ensembl958,350,246 - 58,525,420 (-)Ensembl
Rnor_6.0 Ensembl963,456,783 - 63,641,400 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107325   ⟹   ENSRNOP00000087808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl965,844,570 - 66,021,238 (-)Ensembl
mRatBN7.2 Ensembl958,350,246 - 58,530,707 (-)Ensembl
RefSeq Acc Id: NM_001109306   ⟹   NP_001102776
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8965,844,570 - 66,021,238 (-)NCBI
mRatBN7.2958,350,246 - 58,526,925 (-)NCBI
Rnor_6.0963,459,095 - 63,637,677 (-)NCBI
Rnor_5.0963,262,569 - 63,445,219 (-)NCBI
RGSC_v3.4955,647,221 - 55,824,683 (-)RGD
Celera955,813,347 - 55,988,972 (-)RGD
Sequence:
RefSeq Acc Id: XM_008767129   ⟹   XP_008765351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8965,842,351 - 66,021,217 (-)NCBI
mRatBN7.2958,348,027 - 58,526,928 (-)NCBI
Rnor_6.0963,456,877 - 63,637,674 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596603   ⟹   XP_017452092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8965,842,351 - 66,028,569 (-)NCBI
mRatBN7.2958,348,027 - 58,534,256 (-)NCBI
Rnor_6.0963,456,877 - 63,642,193 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063267604   ⟹   XP_063123674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8965,842,351 - 66,021,216 (-)NCBI
RefSeq Acc Id: NP_001102776   ⟸   NM_001109306
- UniProtKB: A6IP31 (UniProtKB/TrEMBL),   D3ZJ19 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765351   ⟸   XM_008767129
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AHD9 (UniProtKB/TrEMBL),   D3ZJ19 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452092   ⟸   XM_017596603
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AHD9 (UniProtKB/TrEMBL),   D3ZJ19 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071049   ⟸   ENSRNOT00000087684
Ensembl Acc Id: ENSRNOP00000044829   ⟸   ENSRNOT00000049259
Ensembl Acc Id: ENSRNOP00000087808   ⟸   ENSRNOT00000107325
RefSeq Acc Id: XP_063123674   ⟸   XM_063267604
- Peptide Label: isoform X2
- UniProtKB: D3ZJ19 (UniProtKB/TrEMBL),   A0A0G2JZH5 (UniProtKB/TrEMBL)
Protein Domains
CMP   CUT   CUTL   Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJ19-F1-model_v2 AlphaFold D3ZJ19 1-733 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562369 AgrOrtholog
BioCyc Gene G2FUF-27502 BioCyc
Ensembl Genes ENSRNOG00000010188 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049259.4 UniProtKB/TrEMBL
  ENSRNOT00000087684 ENTREZGENE
  ENSRNOT00000087684.3 UniProtKB/TrEMBL
  ENSRNOT00000107325 ENTREZGENE
  ENSRNOT00000107325.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.260.40 UniProtKB/TrEMBL
  1.10.260.70 UniProtKB/TrEMBL
  3.10.20.710 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro CUTL UniProtKB/TrEMBL
  Hmoeo_CUT UniProtKB/TrEMBL
  Homeobox UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  Lambda_DNA-bd UniProtKB/TrEMBL
  SATB1/SATB2 UniProtKB/TrEMBL
  SATB_CUTL_sf UniProtKB/TrEMBL
  SATB_ULD_sf UniProtKB/TrEMBL
  ULD UniProtKB/TrEMBL
KEGG Report rno:501145 UniProtKB/TrEMBL
NCBI Gene 501145 ENTREZGENE
PANTHER DNA-BINDING PROTEIN SATB2 UniProtKB/TrEMBL
  PTHR15116 UniProtKB/TrEMBL
Pfam CUT UniProtKB/TrEMBL
  CUTL UniProtKB/TrEMBL
  Homeobox UniProtKB/TrEMBL
  ULD UniProtKB/TrEMBL
PhenoGen Satb2 PhenoGen
PROSITE CUT UniProtKB/TrEMBL
  CUTL UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  ULD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010188 RatGTEx
SMART CUT UniProtKB/TrEMBL
  HOX UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
  Lambda_like_DNA UniProtKB/TrEMBL
UniProt A0A0G2JZH5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHD9 ENTREZGENE, UniProtKB/TrEMBL
  A6IP31 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJ19 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-18 Satb2  SATB homeobox 2  Satb2  special AT-rich sequence binding protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Satb2  special AT-rich sequence binding protein 2  RGD1562369_predicted  similar to KIAA1034-like DNA binding protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562369_predicted  similar to KIAA1034-like DNA binding protein (predicted)  LOC501145  similar to KIAA1034-like DNA binding protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501145  similar to KIAA1034-like DNA binding protein      Symbol and Name status set to provisional 70820 PROVISIONAL