Phf21a (PHD finger protein 21A) - Rat Genome Database

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Gene: Phf21a (PHD finger protein 21A) Rattus norvegicus
Analyze
Symbol: Phf21a
Name: PHD finger protein 21A
RGD ID: 1560612
Description: Enables chromatin binding activity. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II and suckling behavior. Predicted to be located in nucleus. Predicted to be part of DNA repair complex and histone deacetylase complex. Orthologous to human PHF21A (PHD finger protein 21A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; fenvalerate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362166; RGD1560612; similar to PHF21A protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8398,600,933 - 98,791,132 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl398,613,844 - 98,787,350 (+)EnsemblGRCr8
mRatBN7.2378,158,760 - 78,331,903 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl378,194,549 - 78,331,865 (+)EnsemblmRatBN7.2
Rnor_6.0381,099,765 - 81,271,841 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl381,134,505 - 81,271,849 (+)Ensemblrn6Rnor6.0
Rnor_5.0387,803,380 - 87,979,083 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4376,583,850 - 76,759,238 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera377,360,760 - 77,537,633 (+)NCBICelera
Cytogenetic Map3q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The rest repression of the neurosecretory phenotype is negatively modulated by BHC80, a protein of the BRAF/HDAC complex. Klajn A, etal., J Neurosci. 2009 May 13;29(19):6296-307. doi: 10.1523/JNEUROSCI.5943-08.2009.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15325272   PMID:16684532   PMID:24217620  


Genomics

Comparative Map Data
Phf21a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8398,600,933 - 98,791,132 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl398,613,844 - 98,787,350 (+)EnsemblGRCr8
mRatBN7.2378,158,760 - 78,331,903 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl378,194,549 - 78,331,865 (+)EnsemblmRatBN7.2
Rnor_6.0381,099,765 - 81,271,841 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl381,134,505 - 81,271,849 (+)Ensemblrn6Rnor6.0
Rnor_5.0387,803,380 - 87,979,083 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4376,583,850 - 76,759,238 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera377,360,760 - 77,537,633 (+)NCBICelera
Cytogenetic Map3q24NCBI
PHF21A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381145,929,319 - 46,121,454 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1145,929,319 - 46,121,473 (-)Ensemblhg38GRCh38
GRCh371145,950,870 - 46,143,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361145,907,446 - 46,099,561 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341145,910,692 - 46,099,561NCBI
Celera1146,098,473 - 46,290,814 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1145,657,507 - 45,849,706 (-)NCBIHuRef
CHM1_11145,949,282 - 46,141,198 (-)NCBICHM1_1
T2T-CHM13v2.01146,085,233 - 46,277,451 (-)NCBIT2T-CHM13v2.0
Phf21a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39292,014,096 - 92,195,011 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl292,014,451 - 92,195,011 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38292,183,751 - 92,364,667 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl292,093,117 - 92,364,666 (+)Ensemblmm10GRCm38
MGSCv37292,024,339 - 92,204,823 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36292,014,888 - 92,161,749 (+)NCBIMGSCv36mm8
Celera293,578,000 - 93,757,795 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.8NCBI
Phf21a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554221,857,335 - 2,045,816 (+)Ensembl
ChiLan1.0NW_0049554221,857,335 - 2,045,816 (+)NCBIChiLan1.0ChiLan1.0
PHF21A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2948,137,449 - 48,329,145 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,144,299 - 48,336,066 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01145,883,122 - 46,074,805 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11146,374,675 - 46,627,242 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1146,374,675 - 46,564,358 (-)EnsemblpanPan2panpan1.1
PHF21A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11843,300,426 - 43,493,956 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1843,335,986 - 43,492,828 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1842,028,422 - 42,221,992 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01843,956,093 - 44,149,924 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1843,956,161 - 44,149,010 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11843,440,642 - 43,634,184 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01842,993,830 - 43,187,352 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01843,725,813 - 43,919,410 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Phf21a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494720,795,602 - 20,981,802 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365622,920,316 - 3,093,556 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365622,920,254 - 3,093,444 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF21A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl216,344,322 - 16,545,272 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1216,341,964 - 16,544,127 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2217,688,605 - 17,803,280 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHF21A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1119,219,067 - 19,409,474 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl119,248,427 - 19,406,918 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038116,496,495 - 116,686,491 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phf21a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247672,388,093 - 2,584,033 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247672,388,111 - 2,584,033 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Phf21a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1566,326,337 - 66,499,632 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Phf21a
2344 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:512
Count of miRNA genes:185
Interacting mature miRNAs:208
Transcripts:ENSRNOT00000008061, ENSRNOT00000008241, ENSRNOT00000066219, ENSRNOT00000067664
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
D3Rat31  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8398,651,666 - 98,651,826 (+)Marker Load Pipeline
mRatBN7.2378,196,030 - 78,196,190 (+)MAPPERmRatBN7.2
Rnor_6.0381,136,068 - 81,136,227NCBIRnor6.0
Rnor_5.0387,839,283 - 87,839,442UniSTSRnor5.0
RGSC_v3.4376,620,663 - 76,620,970RGDRGSC3.4
RGSC_v3.4376,620,759 - 76,620,918UniSTSRGSC3.4
Celera377,398,290 - 77,398,449UniSTS
RGSC_v3.1376,517,187 - 76,517,346RGD
RH 3.4 Map31018.5UniSTS
RH 3.4 Map31018.5RGD
RH 2.0 Map3698.6RGD
SHRSP x BN Map342.8698RGD
Cytogenetic Map3q24UniSTS
BE109327  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2378,335,413 - 78,335,593 (+)MAPPERmRatBN7.2
Rnor_6.0381,275,387 - 81,275,566NCBIRnor6.0
Rnor_5.0387,978,856 - 87,979,035UniSTSRnor5.0
RGSC_v3.4376,761,869 - 76,762,048UniSTSRGSC3.4
Celera377,537,406 - 77,537,585UniSTS
RH 3.4 Map3685.09UniSTS
Cytogenetic Map3q24UniSTS
RH130596  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2378,332,254 - 78,332,442 (+)MAPPERmRatBN7.2
Rnor_6.0381,272,228 - 81,272,415NCBIRnor6.0
Rnor_5.0387,975,697 - 87,975,884UniSTSRnor5.0
RGSC_v3.4376,758,710 - 76,758,897UniSTSRGSC3.4
Celera377,534,247 - 77,534,434UniSTS
Cytogenetic Map3q24UniSTS
AI407863  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2378,262,535 - 78,262,682 (+)MAPPERmRatBN7.2
Rnor_6.0381,202,606 - 81,202,752NCBIRnor6.0
Rnor_5.0387,905,759 - 87,905,905UniSTSRnor5.0
RGSC_v3.4376,687,299 - 76,687,445UniSTSRGSC3.4
Celera377,464,837 - 77,464,983UniSTS
Cytogenetic Map3q24UniSTS
BE107484  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2378,263,795 - 78,263,948 (+)MAPPERmRatBN7.2
Rnor_6.0381,203,866 - 81,204,018NCBIRnor6.0
Rnor_5.0387,907,019 - 87,907,171UniSTSRnor5.0
RGSC_v3.4376,688,559 - 76,688,711UniSTSRGSC3.4
Celera377,466,105 - 77,466,257UniSTS
RH 3.4 Map3706.9UniSTS
Cytogenetic Map3q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
22 13 82 216 91 90 59 150 59 6 473 275 22 194 109 124 31 34 34

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001428967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001070000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC129036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY724487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000067664   ⟹   ENSRNOP00000061099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl398,613,844 - 98,787,350 (+)Ensembl
mRatBN7.2 Ensembl378,194,549 - 78,331,865 (+)Ensembl
Rnor_6.0 Ensembl381,134,505 - 81,271,849 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095030   ⟹   ENSRNOP00000078574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl398,613,850 - 98,787,350 (+)Ensembl
mRatBN7.2 Ensembl378,194,549 - 78,331,865 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113738   ⟹   ENSRNOP00000088965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl378,194,549 - 78,331,865 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114898   ⟹   ENSRNOP00000093848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl378,202,266 - 78,331,865 (+)Ensembl
RefSeq Acc Id: XM_039106451   ⟹   XP_038962379
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,615,601 - 98,791,132 (+)NCBI
mRatBN7.2378,158,760 - 78,331,903 (+)NCBI
RefSeq Acc Id: XM_063284893   ⟹   XP_063140963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,812 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284894   ⟹   XP_063140964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,614,847 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284895   ⟹   XP_063140965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,615,600 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284896   ⟹   XP_063140966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,615,600 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284897   ⟹   XP_063140967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,614,847 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284898   ⟹   XP_063140968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,615,600 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284899   ⟹   XP_063140969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,614,847 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284900   ⟹   XP_063140970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,812 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284901   ⟹   XP_063140971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,616,633 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284902   ⟹   XP_063140972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,616,633 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284903   ⟹   XP_063140973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,812 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284904   ⟹   XP_063140974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,812 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284905   ⟹   XP_063140975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,616,632 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284906   ⟹   XP_063140976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,616,632 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284907   ⟹   XP_063140977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,812 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284908   ⟹   XP_063140978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,812 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284909   ⟹   XP_063140979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,813 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284910   ⟹   XP_063140980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,614,847 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284911   ⟹   XP_063140981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,614,847 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284912   ⟹   XP_063140982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,616,634 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284913   ⟹   XP_063140983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,615,601 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284914   ⟹   XP_063140984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,813 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284915   ⟹   XP_063140985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,614,408 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284916   ⟹   XP_063140986
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,616,635 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284917   ⟹   XP_063140987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,813 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284918   ⟹   XP_063140988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,600,933 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284919   ⟹   XP_063140989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,813 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284920   ⟹   XP_063140990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,813 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284921   ⟹   XP_063140991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,614,847 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284922   ⟹   XP_063140992
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,614,847 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284923   ⟹   XP_063140993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,813 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284924   ⟹   XP_063140994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,614,847 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284925   ⟹   XP_063140995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,600,933 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284926   ⟹   XP_063140996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,813 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284927   ⟹   XP_063140997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,813 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284928   ⟹   XP_063140998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,614,847 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284929   ⟹   XP_063140999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,614,847 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284930   ⟹   XP_063141000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,811 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284931   ⟹   XP_063141001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,811 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284932   ⟹   XP_063141002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,811 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284933   ⟹   XP_063141003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,811 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284934   ⟹   XP_063141004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,813 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284935   ⟹   XP_063141005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,614,847 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284936   ⟹   XP_063141006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,812 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284937   ⟹   XP_063141007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,616,633 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284938   ⟹   XP_063141008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,615,600 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284939   ⟹   XP_063141009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,812 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284940   ⟹   XP_063141010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,812 - 98,791,132 (+)NCBI
RefSeq Acc Id: XM_063284941   ⟹   XP_063141011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8398,613,812 - 98,791,132 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001415896 (Get FASTA)   NCBI Sequence Viewer  
  NP_001415897 (Get FASTA)   NCBI Sequence Viewer  
  NP_001415898 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962379 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140963 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140964 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140965 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140966 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140967 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140968 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140969 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140970 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140971 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140972 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140973 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140974 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140975 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140976 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140977 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140978 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140979 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140980 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140981 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140982 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140983 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140984 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140985 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140986 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140987 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140988 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140989 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140990 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140991 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140992 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140993 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140994 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140995 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140996 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140997 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140998 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140999 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141000 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141001 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141002 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141003 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141004 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141005 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141006 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141007 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141008 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141009 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141010 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141011 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL79559 (Get FASTA)   NCBI Sequence Viewer  
  EDL79560 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061099
  ENSRNOP00000061099.5
  ENSRNOP00000078574
  ENSRNOP00000078574.2
Ensembl Acc Id: ENSRNOP00000061099   ⟸   ENSRNOT00000067664
RefSeq Acc Id: XP_038962379   ⟸   XM_039106451
- Peptide Label: isoform X4
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000078574   ⟸   ENSRNOT00000095030
Ensembl Acc Id: ENSRNOP00000093848   ⟸   ENSRNOT00000114898
Ensembl Acc Id: ENSRNOP00000088965   ⟸   ENSRNOT00000113738
RefSeq Acc Id: XP_063140988   ⟸   XM_063284918
- Peptide Label: isoform X4
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140995   ⟸   XM_063284925
- Peptide Label: isoform X5
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141000   ⟸   XM_063284930
- Peptide Label: isoform X7
- UniProtKB: A6HNF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141003   ⟸   XM_063284933
- Peptide Label: isoform X10
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141002   ⟸   XM_063284932
- Peptide Label: isoform X9
- UniProtKB: A6HNF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141001   ⟸   XM_063284931
- Peptide Label: isoform X8
- UniProtKB: A6HNF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140970   ⟸   XM_063284900
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140973   ⟸   XM_063284903
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140963   ⟸   XM_063284893
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140978   ⟸   XM_063284908
- Peptide Label: isoform X3
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140977   ⟸   XM_063284907
- Peptide Label: isoform X2
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141009   ⟸   XM_063284939
- Peptide Label: isoform X13
- UniProtKB: A6HNF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141011   ⟸   XM_063284941
- Peptide Label: isoform X14
- UniProtKB: A6HNF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140974   ⟸   XM_063284904
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141006   ⟸   XM_063284936
- Peptide Label: isoform X11
- UniProtKB: A6HNF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141010   ⟸   XM_063284940
- Peptide Label: isoform X12
- UniProtKB: A6HNF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140984   ⟸   XM_063284914
- Peptide Label: isoform X4
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140987   ⟸   XM_063284917
- Peptide Label: isoform X4
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141004   ⟸   XM_063284934
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063140979   ⟸   XM_063284909
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063140993   ⟸   XM_063284923
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063140990   ⟸   XM_063284920
- Peptide Label: isoform X5
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140989   ⟸   XM_063284919
- Peptide Label: isoform X4
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140997   ⟸   XM_063284927
- Peptide Label: isoform X6
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140996   ⟸   XM_063284926
- Peptide Label: isoform X5
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140985   ⟸   XM_063284915
- Peptide Label: isoform X4
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140964   ⟸   XM_063284894
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141005   ⟸   XM_063284935
- Peptide Label: isoform X11
- UniProtKB: A6HNF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140980   ⟸   XM_063284910
- Peptide Label: isoform X4
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140994   ⟸   XM_063284924
- Peptide Label: isoform X6
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140998   ⟸   XM_063284928
- Peptide Label: isoform X5
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140967   ⟸   XM_063284897
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140981   ⟸   XM_063284911
- Peptide Label: isoform X4
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140999   ⟸   XM_063284929
- Peptide Label: isoform X6
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140991   ⟸   XM_063284921
- Peptide Label: isoform X5
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140969   ⟸   XM_063284899
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140992   ⟸   XM_063284922
- Peptide Label: isoform X5
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140965   ⟸   XM_063284895
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141008   ⟸   XM_063284938
- Peptide Label: isoform X12
- UniProtKB: A6HNF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140966   ⟸   XM_063284896
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140968   ⟸   XM_063284898
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140983   ⟸   XM_063284913
- Peptide Label: isoform X4
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140976   ⟸   XM_063284906
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140975   ⟸   XM_063284905
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140972   ⟸   XM_063284902
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141007   ⟸   XM_063284937
- Peptide Label: isoform X11
- UniProtKB: A6HNF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140971   ⟸   XM_063284901
- Peptide Label: isoform X1
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140982   ⟸   XM_063284912
- Peptide Label: isoform X4
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140986   ⟸   XM_063284916
- Peptide Label: isoform X4
- UniProtKB: F1M6K4 (UniProtKB/TrEMBL)
Protein Domains
PHD-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M6K4-F1-model_v2 AlphaFold F1M6K4 1-694 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560612 AgrOrtholog
BioCyc Gene G2FUF-48707 BioCyc
Ensembl Genes ENSRNOG00000006063 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067664 ENTREZGENE
  ENSRNOT00000067664.6 UniProtKB/TrEMBL
  ENSRNOT00000095030 ENTREZGENE
  ENSRNOT00000095030.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene 362166 ENTREZGENE
PANTHER PHD FINGER PROTEIN UniProtKB/TrEMBL
  PHD FINGER PROTEIN 21A UniProtKB/TrEMBL
Pfam PHD UniProtKB/TrEMBL
PhenoGen Phf21a PhenoGen
PROSITE ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006063 RatGTEx
SMART PHD UniProtKB/TrEMBL
Superfamily-SCOP FYVE_PHD_ZnF UniProtKB/TrEMBL
UniProt A0A8I5ZL73_RAT UniProtKB/TrEMBL
  A6HNF8 ENTREZGENE, UniProtKB/TrEMBL
  F1M6K4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-05-26 Phf21a  PHD finger protein 21A  RGD1560612  similar to PHF21A protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560612  similar to PHF21A protein   RGD1560612_predicted  similar to PHF21A protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560612_predicted  similar to PHF21A protein (predicted)  LOC362166  similar to PHF21A protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362166  similar to PHF21A protein      Symbol and Name status set to provisional 70820 PROVISIONAL