Abhd17a (abhydrolase domain containing 17A, depalmitoylase) - Rat Genome Database

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Gene: Abhd17a (abhydrolase domain containing 17A, depalmitoylase) Rattus norvegicus
Analyze
Symbol: Abhd17a
Name: abhydrolase domain containing 17A, depalmitoylase
RGD ID: 1359682
Description: Enables palmitoyl-(protein) hydrolase activity. Involved in protein depalmitoylation; regulation of postsynapse organization; and regulation of protein localization. Located in plasma membrane; postsynaptic density; and recycling endosome membrane. Is active in glutamatergic synapse; postsynaptic density membrane; and postsynaptic recycling endosome membrane. Orthologous to human ABHD17A (abhydrolase domain containing 17A, depalmitoylase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: abhydrolase domain containing 17A; abhydrolase domain-containing protein 17A; abhydrolase domain-containing protein FAM108A; alpha/beta hydrolase domain-containing protein 17A; Fam108a; Fam108a1; family with sequence similarity 108, member A1; MGC94549; RGD1359682; similar to cDNA sequence BC005632; uncharacterized protein family UPF0227 member RGD1359682; upf0227
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,775,016 - 9,781,447 (+)NCBIGRCr8
mRatBN7.279,124,332 - 9,132,762 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,124,332 - 9,130,762 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,002,613 - 12,009,044 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0713,878,129 - 13,884,560 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,744,142 - 11,750,574 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,992,543 - 12,000,978 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,992,543 - 11,998,973 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,160,068 - 12,166,975 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4710,635,489 - 10,641,920 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1710,635,488 - 10,641,919 (+)NCBI
Celera77,306,434 - 7,312,808 (+)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
4. Dynamic Palmitoylation Targets MAP6 to the Axon to Promote Microtubule Stabilization during Neuronal Polarization. Tortosa E, etal., Neuron. 2017 May 17;94(4):809-825.e7. doi: 10.1016/j.neuron.2017.04.042.
5. Identification of PSD-95 Depalmitoylating Enzymes. Yokoi N, etal., J Neurosci. 2016 Jun 15;36(24):6431-44. doi: 10.1523/JNEUROSCI.0419-16.2016.
Additional References at PubMed
PMID:19946888   PMID:22871113   PMID:26701913  


Genomics

Comparative Map Data
Abhd17a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,775,016 - 9,781,447 (+)NCBIGRCr8
mRatBN7.279,124,332 - 9,132,762 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,124,332 - 9,130,762 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,002,613 - 12,009,044 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0713,878,129 - 13,884,560 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,744,142 - 11,750,574 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,992,543 - 12,000,978 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,992,543 - 11,998,973 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,160,068 - 12,166,975 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4710,635,489 - 10,641,920 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1710,635,488 - 10,641,919 (+)NCBI
Celera77,306,434 - 7,312,808 (+)NCBICelera
Cytogenetic Map7q11NCBI
ABHD17A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,876,810 - 1,885,496 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,876,810 - 1,885,496 (-)EnsemblGRCh38hg38GRCh38
GRCh37191,876,809 - 1,885,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,827,975 - 1,836,432 (-)NCBINCBI36Build 36hg18NCBI36
Build 34191,827,975 - 1,836,432NCBI
Celera191,811,047 - 1,819,590 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef191,648,643 - 1,657,196 (-)NCBIHuRef
CHM1_1191,876,564 - 1,885,107 (-)NCBICHM1_1
T2T-CHM13v2.0191,848,130 - 1,856,816 (-)NCBIT2T-CHM13v2.0
Abhd17a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391080,419,483 - 80,426,199 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1080,419,488 - 80,426,175 (-)EnsemblGRCm39 Ensembl
GRCm381080,583,649 - 80,590,341 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,583,654 - 80,590,341 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,046,394 - 80,053,086 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,986,783 - 79,993,433 (-)NCBIMGSCv36mm8
Celera1081,601,448 - 81,608,162 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Abhd17a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,159,314 - 6,168,123 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,159,314 - 6,167,429 (+)NCBIChiLan1.0ChiLan1.0
ABHD17A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2206,247,632 - 6,256,161 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,478,591 - 5,487,120 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v019875,447 - 883,977 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1191,858,703 - 1,863,019 (-)NCBIpanpan1.1PanPan1.1panPan2
ABHD17A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,083,381 - 57,092,021 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,086,800 - 57,092,001 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2056,877,428 - 56,886,071 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02057,815,577 - 57,824,230 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2057,817,402 - 57,824,230 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12056,872,373 - 56,881,014 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,352,357 - 57,360,994 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02057,553,410 - 57,562,054 (+)NCBIUU_Cfam_GSD_1.0
Abhd17a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118216,743,656 - 216,753,069 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365881,077,817 - 1,091,073 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365881,081,719 - 1,089,514 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABHD17A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl276,658,068 - 76,666,552 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1276,658,073 - 76,666,561 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,148,857 - 77,157,339 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABHD17A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.161,678,836 - 1,687,370 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl61,676,438 - 1,687,353 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660817,135,802 - 7,144,351 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abhd17a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248286,917,061 - 6,923,433 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248286,915,126 - 6,923,433 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Abhd17a
16 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:55
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000024576
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat

Markers in Region
D10Bwg1364e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,130,515 - 9,130,708 (+)MAPPERmRatBN7.2
Rnor_6.0711,998,727 - 11,998,919NCBIRnor6.0
Rnor_5.0712,166,252 - 12,166,444UniSTSRnor5.0
RGSC_v3.4710,641,673 - 10,641,865UniSTSRGSC3.4
Celera77,312,561 - 7,312,753UniSTS
Cytogenetic Map7q11UniSTS
RH128456  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,130,518 - 9,130,734 (+)MAPPERmRatBN7.2
Rnor_6.0711,998,730 - 11,998,945NCBIRnor6.0
Rnor_5.0712,166,255 - 12,166,470UniSTSRnor5.0
RGSC_v3.4710,641,676 - 10,641,891UniSTSRGSC3.4
Celera77,312,564 - 7,312,779UniSTS
Cytogenetic Map7q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000024576   ⟹   ENSRNOP00000024576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl79,124,332 - 9,130,762 (+)Ensembl
Rnor_6.0 Ensembl711,992,543 - 11,998,973 (+)Ensembl
RefSeq Acc Id: NM_001006983   ⟹   NP_001006984
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr879,775,016 - 9,781,447 (+)NCBI
mRatBN7.279,124,332 - 9,130,763 (+)NCBI
Rnor_6.0711,992,543 - 11,998,974 (+)NCBI
Rnor_5.0712,160,068 - 12,166,975 (+)NCBI
RGSC_v3.4710,635,489 - 10,641,920 (+)RGD
Celera77,306,434 - 7,312,808 (+)RGD
Sequence:
RefSeq Acc Id: XM_008765090   ⟹   XP_008763312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr879,775,176 - 9,781,447 (+)NCBI
mRatBN7.279,124,486 - 9,132,762 (+)NCBI
Rnor_6.0711,992,705 - 12,000,978 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063263173   ⟹   XP_063119243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr879,775,176 - 9,781,447 (+)NCBI
RefSeq Acc Id: NP_001006984   ⟸   NM_001006983
- UniProtKB: Q5XIJ5 (UniProtKB/Swiss-Prot),   A6K8J3 (UniProtKB/TrEMBL),   A6K8J4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763312   ⟸   XM_008765090
- Peptide Label: isoform X1
- UniProtKB: Q5XIJ5 (UniProtKB/Swiss-Prot),   A6K8J3 (UniProtKB/TrEMBL),   A6K8J4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000024576   ⟸   ENSRNOT00000024576
RefSeq Acc Id: XP_063119243   ⟸   XM_063263173
- Peptide Label: isoform X1
- UniProtKB: Q5XIJ5 (UniProtKB/Swiss-Prot),   A6K8J3 (UniProtKB/TrEMBL),   A6K8J4 (UniProtKB/TrEMBL)
Protein Domains
Serine aminopeptidase S33

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIJ5-F1-model_v2 AlphaFold Q5XIJ5 1-310 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695013
Promoter ID:EPDNEW_R5538
Type:initiation region
Name:Abhd17a_1
Description:abhydrolase domain containing 17A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0711,992,552 - 11,992,612EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359682 AgrOrtholog
BioCyc Gene G2FUF-34953 BioCyc
Ensembl Genes ENSRNOG00000018212 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055032198 UniProtKB/Swiss-Prot
  ENSRNOG00060023499 UniProtKB/Swiss-Prot
  ENSRNOG00065018452 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000024576.4 UniProtKB/Swiss-Prot
  ENSRNOT00055055627 UniProtKB/Swiss-Prot
  ENSRNOT00060040715 UniProtKB/Swiss-Prot
  ENSRNOT00065030956 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7189228 IMAGE-MGC_LOAD
InterPro AB_hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hydrolase_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:299617 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94549 IMAGE-MGC_LOAD
NCBI Gene 299617 ENTREZGENE
PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 17A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hydrolase_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Abhd17a PhenoGen
RatGTEx ENSRNOG00000018212 RatGTEx
  ENSRNOG00055032198 RatGTEx
  ENSRNOG00060023499 RatGTEx
  ENSRNOG00065018452 RatGTEx
Superfamily-SCOP alpha/beta-Hydrolases UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6K8J3 ENTREZGENE, UniProtKB/TrEMBL
  A6K8J4 ENTREZGENE, UniProtKB/TrEMBL
  AB17A_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-13 Abhd17a  abhydrolase domain containing 17A, depalmitoylase  Abhd17a  abhydrolase domain containing 17A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-03-20 Abhd17a  abhydrolase domain containing 17A  Fam108a1  family with sequence similarity 108, member A1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Fam108a1  family with sequence similarity 108, member A1  RGD1359682  uncharacterized protein family UPF0227 member RGD1359682  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 RGD1359682  uncharacterized protein family UPF0227 member RGD1359682  MGC94549  similar to cDNA sequence BC005632  Symbol and Name updated 1299863 APPROVED
2005-07-29 MGC94549  similar to cDNA sequence BC005632      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference