Ccdc172 (coiled-coil domain containing 172) - Rat Genome Database

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Gene: Ccdc172 (coiled-coil domain containing 172) Rattus norvegicus
Analyze
Symbol: Ccdc172
Name: coiled-coil domain containing 172
RGD ID: 1359412
Description: Located in sperm midpiece. Orthologous to human CCDC172 (coiled-coil domain containing 172); INTERACTS WITH bisphenol A; lidocaine; 2-palmitoylglycerol (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 172; hypothetical protein LOC361776; LOC361776; TEKT2-binding protein 1; UPF0628 protein C10orf96 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81267,615,341 - 267,661,568 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1267,615,349 - 267,662,269 (+)EnsemblGRCr8
mRatBN7.21257,629,188 - 257,682,373 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1257,629,208 - 257,675,247 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1265,840,754 - 265,883,755 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01272,546,781 - 272,589,782 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01265,183,723 - 265,226,993 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01279,633,655 - 279,699,234 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1279,633,671 - 279,676,909 (+)Ensemblrn6Rnor6.0
Rnor_5.01286,995,694 - 287,041,588 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41264,938,299 - 264,981,620 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1253,289,322 - 253,332,261 (+)NCBICelera
RGSC_v3.11265,149,399 - 265,192,664 (+)NCBI
Cytogenetic Map1q55NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cilium  (IEA)
cytoplasm  (IBA,IEA,ISO,ISS)
sperm midpiece  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
5. Molecular cloning and subcellular localization of Tektin2-binding protein 1 (Ccdc 172) in rat spermatozoa. Yamaguchi A, etal., J Histochem Cytochem. 2014 Apr;62(4):286-97. doi: 10.1369/0022155413520607. Epub 2014 Jan 6.

Genomics

Comparative Map Data
Ccdc172
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81267,615,341 - 267,661,568 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1267,615,349 - 267,662,269 (+)EnsemblGRCr8
mRatBN7.21257,629,188 - 257,682,373 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1257,629,208 - 257,675,247 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1265,840,754 - 265,883,755 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01272,546,781 - 272,589,782 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01265,183,723 - 265,226,993 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01279,633,655 - 279,699,234 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1279,633,671 - 279,676,909 (+)Ensemblrn6Rnor6.0
Rnor_5.01286,995,694 - 287,041,588 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41264,938,299 - 264,981,620 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1253,289,322 - 253,332,261 (+)NCBICelera
RGSC_v3.11265,149,399 - 265,192,664 (+)NCBI
Cytogenetic Map1q55NCBI
CCDC172
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810116,324,448 - 116,380,029 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10116,324,388 - 116,380,029 (+)Ensemblhg38GRCh38
GRCh3710118,083,960 - 118,139,541 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610118,073,930 - 118,129,531 (+)NCBIBuild 36Build 36hg18NCBI36
Celera10111,813,149 - 111,868,738 (+)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10111,711,013 - 111,766,601 (+)NCBIHuRef
CHM1_110118,367,061 - 118,422,663 (+)NCBICHM1_1
T2T-CHM13v2.010117,218,440 - 117,274,006 (+)NCBIT2T-CHM13v2.0
Ccdc172
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391958,500,416 - 58,546,504 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1958,500,424 - 58,541,517 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381958,511,985 - 58,553,104 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1958,511,993 - 58,553,085 (+)Ensemblmm10GRCm38
MGSCv371958,586,492 - 58,627,575 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361958,565,272 - 58,614,636 (+)NCBIMGSCv36mm8
Celera1960,708,402 - 60,749,413 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1954.35NCBI
Ccdc172
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543121,109,547 - 21,183,019 (+)Ensembl
ChiLan1.0NW_00495543121,099,475 - 21,193,932 (+)NCBIChiLan1.0ChiLan1.0
CCDC172
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28128,200,331 - 128,255,951 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110128,205,669 - 128,261,289 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010112,870,502 - 112,968,853 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110116,345,818 - 116,401,441 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10116,345,394 - 116,401,441 (+)EnsemblpanPan2panpan1.1
CCDC172
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12826,953,945 - 27,013,600 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2826,954,022 - 27,011,998 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2827,105,361 - 27,164,170 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02827,492,277 - 27,549,933 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2827,490,237 - 27,549,923 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12827,045,779 - 27,104,626 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02827,058,801 - 27,117,626 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02827,255,186 - 27,312,795 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccdc172
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721319,183,318 - 19,256,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364866,305,419 - 6,375,038 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364866,305,419 - 6,376,514 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC172
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14126,549,331 - 126,636,518 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.114126,549,112 - 126,637,606 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214137,796,839 - 137,848,235 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC172
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19109,138,300 - 109,192,883 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9109,139,390 - 109,192,198 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604870,382,691 - 70,436,839 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc172
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473730,200,650 - 30,274,521 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473730,200,723 - 30,274,559 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccdc172
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1257,545,958 - 57,609,842 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:39
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000036012
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1263946994269633915Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1224633915269633915Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1232312773270518180Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1226175591270518180Rat
1578775Iddm21Insulin dependent diabetes mellitus QTL 214.13blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1245782829270518180Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1248619887269633915Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631836Stl31Serum triglyceride level QTL 314.645e-06blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1247133834270518180Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1600390Niddm64Non-insulin dependent diabetes mellitus QTL 640.003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1257624997270518180Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1237995023269633915Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1233480549270108840Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1234540191270518180Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1233204160270518180Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1233480549270108840Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1255849111270518180Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1241569529269633915Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1243953669270518180Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1225108840270108840Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1226175591270518180Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233349180270518180Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1228174566270518180Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
3 2 8 33 17 21 6 62 6 2 108 72 2 36 25 68 15 9 9

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC079324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV104909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000036012   ⟹   ENSRNOP00000029328
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1267,615,420 - 267,658,455 (+)Ensembl
mRatBN7.2 Ensembl1257,629,208 - 257,672,302 (+)Ensembl
Rnor_6.0 Ensembl1279,633,671 - 279,676,909 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091669   ⟹   ENSRNOP00000071660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1267,615,349 - 267,658,096 (+)Ensembl
mRatBN7.2 Ensembl1257,629,208 - 257,675,247 (+)Ensembl
Rnor_6.0 Ensembl1279,633,727 - 279,676,909 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000150717   ⟹   ENSRNOP00000105984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1267,615,349 - 267,662,269 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000161700   ⟹   ENSRNOP00000101683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1267,615,420 - 267,662,269 (+)Ensembl
RefSeq Acc Id: NM_001014169   ⟹   NP_001014191
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81267,615,364 - 267,658,456 (+)NCBI
mRatBN7.21257,629,208 - 257,672,303 (+)NCBI
Rnor_6.01279,633,671 - 279,676,910 (+)NCBI
Rnor_5.01286,995,694 - 287,041,588 (+)NCBI
RGSC_v3.41264,938,299 - 264,981,620 (+)RGD
Celera1253,289,322 - 253,332,261 (+)RGD
Sequence:
RefSeq Acc Id: XM_039084726   ⟹   XP_038940654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81267,615,341 - 267,661,568 (+)NCBI
mRatBN7.21257,629,188 - 257,682,372 (+)NCBI
RefSeq Acc Id: XM_039084731   ⟹   XP_038940659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81267,615,341 - 267,661,568 (+)NCBI
mRatBN7.21257,629,188 - 257,682,371 (+)NCBI
RefSeq Acc Id: XM_039084735   ⟹   XP_038940663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81267,615,342 - 267,661,568 (+)NCBI
mRatBN7.21257,629,188 - 257,682,373 (+)NCBI
RefSeq Acc Id: XM_039084738   ⟹   XP_038940666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81267,615,341 - 267,660,077 (+)NCBI
mRatBN7.21257,629,188 - 257,674,898 (+)NCBI
RefSeq Acc Id: XM_063268852   ⟹   XP_063124922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81267,615,342 - 267,661,568 (+)NCBI
RefSeq Acc Id: XM_063268857   ⟹   XP_063124927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81267,615,342 - 267,660,077 (+)NCBI
RefSeq Acc Id: NP_001014191   ⟸   NM_001014169
- UniProtKB: Q6AXT4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000029328   ⟸   ENSRNOT00000036012
Ensembl Acc Id: ENSRNOP00000071660   ⟸   ENSRNOT00000091669
RefSeq Acc Id: XP_038940663   ⟸   XM_039084735
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038940654   ⟸   XM_039084726
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038940659   ⟸   XM_039084731
- Peptide Label: isoform X2
- UniProtKB: A0A8L2R556 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940666   ⟸   XM_039084738
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063124922   ⟸   XM_063268852
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063124927   ⟸   XM_063268857
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000105984   ⟸   ENSRNOT00000150717
Ensembl Acc Id: ENSRNOP00000101683   ⟸   ENSRNOT00000161700

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AXT4-F1-model_v2 AlphaFold Q6AXT4 1-263 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691008
Promoter ID:EPDNEW_R1533
Type:multiple initiation site
Name:Ccdc172_1
Description:coiled-coil domain containing 172
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01279,633,655 - 279,633,715EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359412 AgrOrtholog
BioCyc Gene G2FUF-55271 BioCyc
Ensembl Genes ENSRNOG00000017656 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000036012.6 UniProtKB/Swiss-Prot
  ENSRNOT00000091669 ENTREZGENE
  ENSRNOT00000150717 ENTREZGENE
IMAGE_CLONE IMAGE:7135457 IMAGE-MGC_LOAD
InterPro CCDC172 UniProtKB/Swiss-Prot
KEGG Report rno:361776 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94503 IMAGE-MGC_LOAD
NCBI Gene 361776 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 172 UniProtKB/Swiss-Prot
  PTHR22419 UniProtKB/Swiss-Prot
PhenoGen Ccdc172 PhenoGen
RatGTEx ENSRNOG00000017656 RatGTEx
UniProt A0A8L2R556 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L7G4_RAT UniProtKB/TrEMBL
  A0ABK0L9U1_RAT UniProtKB/TrEMBL
  CC172_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-17 Ccdc172  coiled-coil domain containing 172  LOC361776  LOC361776  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC361776  LOC361776      Symbol and Name status set to provisional 70820 PROVISIONAL