Cavin2 (caveolae associated protein 2) - Rat Genome Database

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Gene: Cavin2 (caveolae associated protein 2) Rattus norvegicus
Analyze
Symbol: Cavin2
Name: caveolae associated protein 2
RGD ID: 1359345
Description: Predicted to enable phosphatidylserine binding activity and protein kinase C binding activity. Predicted to be involved in plasma membrane tubulation. Predicted to be located in cytosol and membrane raft. Predicted to be active in caveola and cytoplasm. Orthologous to human CAVIN2 (caveolae associated protein 2); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: caveolae-associated protein 2; cavin-2; MGC94054; phosphatidylserine-binding protein; Sdpr; serum deprivation response; serum deprivation response protein; serum deprivation-response protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8957,794,007 - 57,806,024 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl957,794,019 - 57,806,024 (-)EnsemblGRCr8
mRatBN7.2950,302,079 - 50,314,096 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl950,301,206 - 50,314,147 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx958,844,832 - 58,856,873 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0963,967,673 - 63,979,714 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0962,263,643 - 62,275,680 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0955,244,136 - 55,256,153 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl955,243,255 - 55,256,340 (-)Ensemblrn6Rnor6.0
Rnor_5.0954,940,738 - 54,952,755 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4947,373,044 - 47,385,061 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera947,939,632 - 47,951,653 (-)NCBICelera
RGSC_v3.1947,374,457 - 47,386,475 (-)NCBI
Cytogenetic Map9q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
AM-251  (ISO)
amphetamine  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
carbonyl sulfide  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (EXP)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
folpet  (ISO)
gentamycin  (EXP)
glycidyl methacrylate  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methylformamide  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nitrates  (ISO)
Nutlin-3  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (EXP)
triadimefon  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
caveola  (IBA,IEA,ISO,ISS)
cytoplasm  (IBA,IEA,ISO)
cytosol  (IEA,ISO,ISS)
membrane raft  (IEA,ISO)
plasma membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Serum deprivation response gene is induced by serum starvation but not by contact inhibition. Gustincich S and Schneider C, Cell Growth Differ 1993 Sep;4(9):753-60.
3. Targeting of protein kinase Calpha to caveolae. Mineo C, etal., J Cell Biol. 1998 May 4;141(3):601-10.
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:2390065   PMID:10191091   PMID:15489334   PMID:18332105   PMID:19525939   PMID:25204797   PMID:25618412   PMID:25931508   PMID:36335812  


Genomics

Comparative Map Data
Cavin2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8957,794,007 - 57,806,024 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl957,794,019 - 57,806,024 (-)EnsemblGRCr8
mRatBN7.2950,302,079 - 50,314,096 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl950,301,206 - 50,314,147 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx958,844,832 - 58,856,873 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0963,967,673 - 63,979,714 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0962,263,643 - 62,275,680 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0955,244,136 - 55,256,153 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl955,243,255 - 55,256,340 (-)Ensemblrn6Rnor6.0
Rnor_5.0954,940,738 - 54,952,755 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4947,373,044 - 47,385,061 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera947,939,632 - 47,951,653 (-)NCBICelera
RGSC_v3.1947,374,457 - 47,386,475 (-)NCBI
Cytogenetic Map9q22NCBI
CAVIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382191,834,310 - 191,847,088 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2191,834,305 - 191,847,211 (-)Ensemblhg38GRCh38
GRCh372192,699,036 - 192,711,814 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362192,407,281 - 192,420,226 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342192,525,246 - 192,537,296NCBI
Celera2186,294,205 - 186,307,180 (-)NCBICelera
Cytogenetic Map2q32.3NCBI
HuRef2184,557,290 - 184,570,265 (-)NCBIHuRef
CHM1_12192,705,004 - 192,717,980 (-)NCBICHM1_1
T2T-CHM13v2.02192,322,523 - 192,335,302 (-)NCBIT2T-CHM13v2.0
Cavin2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39151,328,285 - 51,342,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl151,328,285 - 51,342,119 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38151,289,126 - 51,302,960 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl151,289,126 - 51,302,960 (+)Ensemblmm10GRCm38
MGSCv37151,345,970 - 51,359,804 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36151,233,671 - 51,247,505 (+)NCBIMGSCv36mm8
Celera151,588,665 - 51,602,512 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map126.13NCBI
Cavin2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554037,458,900 - 7,471,257 (+)Ensembl
ChiLan1.0NW_0049554037,459,038 - 7,471,809 (+)NCBIChiLan1.0ChiLan1.0
CAVIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21394,508,021 - 94,520,975 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B94,523,005 - 94,535,934 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B79,127,676 - 79,140,585 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B197,042,366 - 197,055,326 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B197,042,366 - 197,055,326 (-)EnsemblpanPan2panpan1.1
CAVIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1372,300,301 - 2,307,957 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha373,248,356 - 3,262,084 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0372,188,764 - 2,202,518 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl372,188,758 - 2,202,518 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1372,198,415 - 2,212,031 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0372,165,704 - 2,180,655 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0372,178,440 - 2,192,258 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cavin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303150,371,498 - 150,384,175 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365066,453,652 - 6,466,770 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365066,453,914 - 6,466,574 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAVIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1596,474,284 - 96,490,016 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11596,476,675 - 96,490,231 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215107,752,053 - 107,765,594 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAVIN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11077,371,220 - 77,384,574 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040122,090,276 - 122,103,217 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cavin2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248544,354,024 - 4,364,992 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248544,354,099 - 4,364,992 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cavin2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14124,125,993 - 124,139,205 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cavin2
70 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:98
Interacting mature miRNAs:122
Transcripts:ENSRNOT00000028907
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95746049778547958Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat

Markers in Region
RH133908  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8957,794,431 - 57,794,633 (+)Marker Load Pipeline
mRatBN7.2950,302,503 - 50,302,705 (+)MAPPERmRatBN7.2
Rnor_6.0955,244,561 - 55,244,762NCBIRnor6.0
Rnor_5.0954,941,163 - 54,941,364UniSTSRnor5.0
RGSC_v3.4947,373,469 - 47,373,670UniSTSRGSC3.4
Celera947,940,057 - 47,940,258UniSTS
Cytogenetic Map9q22UniSTS
UniSTS:547539  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2950,303,279 - 50,303,503 (+)MAPPERmRatBN7.2
Rnor_6.0955,245,337 - 55,245,560NCBIRnor6.0
Rnor_5.0954,941,939 - 54,942,162UniSTSRnor5.0
Celera947,940,833 - 47,941,056UniSTS
Cytogenetic Map9q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 12 67 160 91 90 59 74 59 6 337 174 11 135 81 92 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000028907   ⟹   ENSRNOP00000030025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl957,794,019 - 57,806,024 (-)Ensembl
mRatBN7.2 Ensembl950,301,206 - 50,314,147 (-)Ensembl
Rnor_6.0 Ensembl955,243,255 - 55,256,340 (-)Ensembl
RefSeq Acc Id: NM_001007712   ⟹   NP_001007713
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8957,794,007 - 57,806,024 (-)NCBI
mRatBN7.2950,302,079 - 50,314,096 (-)NCBI
Rnor_6.0955,244,136 - 55,256,153 (-)NCBI
Rnor_5.0954,940,738 - 54,952,755 (-)NCBI
RGSC_v3.4947,373,044 - 47,385,061 (-)RGD
Celera947,939,632 - 47,951,653 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001007713 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH81956 (Get FASTA)   NCBI Sequence Viewer  
  EDL99083 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000030025
  ENSRNOP00000030025.3
GenBank Protein Q66H98 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001007713   ⟸   NM_001007712
- UniProtKB: Q66H98 (UniProtKB/Swiss-Prot),   A6INX7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000030025   ⟸   ENSRNOT00000028907

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66H98-F1-model_v2 AlphaFold Q66H98 1-417 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696662
Promoter ID:EPDNEW_R7186
Type:multiple initiation site
Name:Cavin2_1
Description:caveolae associated protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0955,256,204 - 55,256,264EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359345 AgrOrtholog
BioCyc Gene G2FUF-27595 BioCyc
Ensembl Genes ENSRNOG00000025895 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000028907 ENTREZGENE
  ENSRNOT00000028907.6 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7123246 IMAGE-MGC_LOAD
InterPro Cavin_fam UniProtKB/Swiss-Prot
KEGG Report rno:316384 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94054 IMAGE-MGC_LOAD
NCBI Gene 316384 ENTREZGENE
PANTHER PTHR15240 UniProtKB/Swiss-Prot
  PTHR15240:SF1 UniProtKB/Swiss-Prot
Pfam PTRF_SDPR UniProtKB/Swiss-Prot
PhenoGen Cavin2 PhenoGen
RatGTEx ENSRNOG00000025895 RatGTEx
UniProt A6INX7 ENTREZGENE, UniProtKB/TrEMBL
  CAVN2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-04-05 Cavin2  caveolae associated protein 2  Sdpr  serum deprivation response  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Sdpr  serum deprivation response  Sdpr  serum deprivation response protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Sdpr  serum deprivation response protein      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 Sdpr  serum deprivation response protein      Symbol and Name status set to provisional 70820 PROVISIONAL