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Gene: Slc17a9 (solute carrier family 17 member 9) Rattus norvegicus

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Symbol:

Slc17a9

Name:

solute carrier family 17 member 9

RGD ID:

1311940

Description:

Predicted to enable purine nucleotide transmembrane transporter activity. Predicted to be involved in ATP transport and purine nucleotide import into lysosome. Predicted to act upstream of with a positive effect on ATP export. Predicted to act upstream of or within ADP transport; guanine nucleotide transmembrane transport; and lysosomal protein catabolic process. Predicted to be located in chromaffin granule membrane. Predicted to be active in lysosomal membrane and mucin granule. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human SLC17A9 (solute carrier family 17 member 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC362287; LOC362287; RGD1311940; similar to bA305P22.2.1 (novel protein, isoform 1); solute carrier family 17 (vesicular nucleotide transporter), member 9; solute carrier family 17, member 9; Vesicular nucleotide transporter; VNUT; Voltage-gated purine nucleotide uniporter SLC17A9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC17A9 (solute carrier family 17 member 9)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Slc17a9 (solute carrier family 17, member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc17a9 (solute carrier family 17 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC17A9 (solute carrier family 17 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC17A9 (solute carrier family 17 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc17a9 (solute carrier family 17 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC17A9 (solute carrier family 17 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC17A9 (solute carrier family 17 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc17a9 (solute carrier family 17 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Slc17a9 (solute carrier family 17 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SIGLEC15 (sialic acid binding Ig like lectin 15)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SLC17A9 (solute carrier family 17 member 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc17a9 (solute carrier family 17, member 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc17a9b (solute carrier family 17 member 9b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc17a9a (solute carrier family 17 member 9a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	DAL5	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	SOA1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	THI73	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	FEN2	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	YCT1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	TNA1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	SEO1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Saccharomyces cerevisiae (baker's yeast):	VHT1	Alliance	DIOPT (Ensembl Compara\|Hieranoid)
Drosophila melanogaster (fruit fly):	MFS18	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	vnut-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc17a9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc17a9	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	188,211,106 - 188,233,553 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	188,216,944 - 188,233,551 (+)	Ensembl				GRCr8
mRatBN7.2	3	167,839,246 - 167,857,462 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	167,839,385 - 167,855,985 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	172,219,516 - 172,236,118 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	181,178,612 - 181,195,214 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	177,840,313 - 177,856,915 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	176,228,433 - 176,246,971 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	176,230,378 - 176,246,953 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	179,929,180 - 179,946,174 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	169,820,567 - 169,837,283 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	164,726,946 - 164,743,476 (-)	NCBI		Celera
RGSC_v3.1	3	169,726,638 - 169,742,785 (+)	NCBI
Cytogenetic Map	3	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

neuronal ceroid lipofuscinosis (ISO)

porokeratosis (ISO)

Porokeratosis, Disseminated Superficial Actinic, 8 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bromobenzene (EXP)

carbon nanotube (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

dimethyl sulfoxide (ISO)

diquat (ISO)

endosulfan (EXP)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

genistein (ISO)

glufosinate (ISO)

hydralazine (ISO)

ivermectin (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylparaben (ISO)

Moniliformin (ISO)

ochratoxin A (EXP)

okadaic acid (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenformin (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propylparaben (ISO)

quercetin (ISO)

rotenone (EXP)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloroethene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ADP transport (ISO)

ATP export (IEA,IMP,ISO)

ATP transport (IBA,ISO)

guanine nucleotide transmembrane transport (ISO)

lysosomal protein catabolic process (ISO)

purine nucleotide import into lysosome (ISO,ISS)

purine-containing compound transmembrane transport (IEA)

transmembrane transport (IEA)

Cellular Component

chromaffin granule membrane (IEA,ISO,ISS)

cytoplasmic vesicle (IEA)

lysosomal membrane (IEA,ISO,ISS)

membrane (IEA)

mucin granule (ISO)

secretory granule (IEA,ISO,ISS)

transport vesicle membrane (IEA)

Molecular Function

ADP transmembrane transporter activity (ISO)

ATP transmembrane transporter activity (ISO)

guanine nucleotide transmembrane transporter activity (ISO)

protein binding (ISO)

purine nucleotide uniporter activity (IEA,ISO,ISS)

secondary active transmembrane transporter activity (IEA)

transmembrane transporter activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Identification of a vesicular nucleotide transporter.	Sawada K, etal., Proc Natl Acad Sci U S A. 2008 Apr 15;105(15):5683-6. doi: 10.1073/pnas.0800141105. Epub 2008 Mar 28.

Additional References at PubMed

PMID:21810784	PMID:24912190	PMID:24989000	PMID:25043192	PMID:29282210	PMID:31810015

Genomics

Comparative Map Data

Slc17a9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	188,211,106 - 188,233,553 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	188,216,944 - 188,233,551 (+)	Ensembl				GRCr8
mRatBN7.2	3	167,839,246 - 167,857,462 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	167,839,385 - 167,855,985 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	172,219,516 - 172,236,118 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	181,178,612 - 181,195,214 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	177,840,313 - 177,856,915 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	176,228,433 - 176,246,971 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	176,230,378 - 176,246,953 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	179,929,180 - 179,946,174 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	169,820,567 - 169,837,283 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	164,726,946 - 164,743,476 (-)	NCBI		Celera
RGSC_v3.1	3	169,726,638 - 169,742,785 (+)	NCBI
Cytogenetic Map	3	q43	NCBI

SLC17A9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	62,952,709 - 62,969,585 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	62,952,668 - 62,969,585 (+)	Ensembl			hg38	GRCh38
GRCh37	20	61,584,061 - 61,600,937 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	61,054,444 - 61,070,394 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	61,054,503 - 61,070,392	NCBI
Celera	20	58,260,628 - 58,276,497 (+)	NCBI		Celera
Cytogenetic Map	20	q13.33	NCBI
HuRef	20	58,301,019 - 58,316,723 (+)	NCBI		HuRef
CHM1_1	20	61,485,010 - 61,500,690 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	64,752,832 - 64,769,656 (+)	NCBI		T2T-CHM13v2.0

Slc17a9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	180,363,989 - 180,384,073 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	180,367,056 - 180,384,073 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	180,724,576 - 180,742,280 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	180,725,263 - 180,742,280 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	180,460,044 - 180,476,983 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	180,654,787 - 180,663,584 (+)	NCBI		MGSCv36	mm8
Celera	2	184,810,869 - 184,828,004 (+)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	103.28	NCBI

Slc17a9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955528	1,124,437 - 1,139,476 (-)	Ensembl
ChiLan1.0	NW_004955528	1,124,430 - 1,139,476 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC17A9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	68,739,785 - 68,755,453 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	68,733,119 - 68,748,587 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	59,339,779 - 59,356,396 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	60,631,969 - 60,647,286 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	60,631,969 - 60,647,278 (+)	Ensembl			panPan2	panpan1.1

SLC17A9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	46,752,464 - 46,765,915 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	46,752,107 - 46,766,375 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	45,936,526 - 45,949,977 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	47,624,805 - 47,638,260 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	47,624,794 - 47,638,258 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	46,722,604 - 46,736,030 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	46,845,708 - 46,859,155 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	47,601,923 - 47,615,385 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc17a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	194,981,669 - 194,997,290 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	10,435,275 - 10,450,960 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	10,435,261 - 10,450,976 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC17A9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	62,186,112 - 62,200,084 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	62,186,114 - 62,200,091 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SLC17A9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	1,254,573 - 1,270,730 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	1,255,203 - 1,270,614 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	49,083,240 - 49,100,007 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc17a9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624741	28,707,739 - 28,730,695 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc17a9
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	157,825,346 - 157,841,673 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	131
Count of miRNA genes:	98
Interacting mature miRNAs:	115
Transcripts:	ENSRNOT00000013623
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1300161	Rf10	Renal function QTL 10	3.57		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	3	181611379	189428310	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	159	91	90	59	92	59	6	356	192	11	137	81	92	31	13	13

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013623 ⟹ ENSRNOP00000013621

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,216,951 - 188,233,551 (+)	Ensembl
mRatBN7.2 Ensembl	3	167,839,385 - 167,855,985 (+)	Ensembl
Rnor_6.0 Ensembl	3	176,230,378 - 176,246,953 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000157261 ⟹ ENSRNOP00000101910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,216,951 - 188,233,551 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166635 ⟹ ENSRNOP00000104893

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,216,944 - 188,233,545 (+)	Ensembl

RefSeq Acc Id:

NM_001108613 ⟹ NP_001102083

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,216,951 - 188,233,551 (+)	NCBI
mRatBN7.2	3	167,839,385 - 167,855,985 (+)	NCBI
Rnor_6.0	3	176,230,378 - 176,246,953 (+)	NCBI
Rnor_5.0	3	179,929,180 - 179,946,174 (+)	NCBI
RGSC_v3.4	3	169,820,567 - 169,837,283 (+)	RGD
Celera	3	164,726,946 - 164,743,476 (-)	RGD

Sequence:

show sequence

GTCTGAGGTGGGAGGGCACGGTGCACAACGGTGCCCATGCCATCCCAGCGCTCTAGCCTGATGC
AGCCAATCCCAGAGGAGACCCGCAAGACCCCTTCTGCGGCAGCAGAGGACAAACGGTGGTCCAG
GCCTGAATGCCAGCTATGGACGGGGATGTTGCTCCTGGGCACCTGCTTGCTGTACTGCACGCGT
GTCACCATGCCTGTCTGTACCGTTGCCATGAGCCAGGACTTCGGCTGGAACAAGAAGGAGGCTG
GTATCGTGCTCAGCAGCTTCTTCTGGGGCTACTGCCTGACTCAGGTGGTGGGCGGCCACCTTGG
GGATCGCATTGGAGGTGAGAAGGTCATCTTGCTGTCAGCCTCTGCCTGGGGCTTCATCACTGTC
ACCACACCACTGCTTGCCCACCTCGGCAGCGGCCACCTGGCCTTCGTGACATTCTCTCGAATAC
TCACCGGTCTGCTCCAAGGTGTCTACTTTCCAGCCCTGACCAGTCTGCTGTCCCAGAGAGTGCA
GGAGAGCGAGAGATCCTTTACTTACAGCACTGTGGGTGCTGGCTCCCAGGTCGGGACTCTGGTG
ACTGGGGGCATAGGGTCTGTGCTCCTGGACCGGTGTGGCTGGCAGAGTGTCTTCTACTTCTCAG
GCGGCCTCACCTTGCTCTGGGTGTACTACGTGTACAAGTACCTGCTGGATGAGAAAGACCTTGT
CCTGGCCCTGGGTGTCCTGGCACAAGGCCTACCTGTGACCAGGCCCTCCAAAGTGCCCTGGAGA
CAACTCTTCCGGAAGGCCTCTGTCTGGGCGGTAATCTGCTCACAGCTGTCCTCAGCTTGCTCTT
TCTTCATTCTACTCTCCTGGCTACCCACCTTCTTCAAGGAGACCTTCCCCCACTCCAAGGGCTG
GGTCTTCAATGTGGTACCCTGGTTGCTGGCAATTCCTGCCAGTTTGTTCAGCGGGTTCATCTCT
GACCGCCTCATCAGTCAGGGTTACAGAGTCATCACGGTGCGTAAGTTCATGCAGGTCATGGGCC
TTGGTCTGTCAAGCATTTTTGCCCTGTGTCTGGGTCACACCACAAGCTTCCTCAAGTCTATGAT
CTTTGCGTCAGCGTCCATTGGCTTCCAGACCTTCAACCACAGTGGTATTTCAGTCAACATTCAG
GACCTGGCCCCATCCTGTGCTGGTTTCCTGTTTGGTGTAGCCAACACTGCAGGGGCCTTGGCAG
GTGTGGTAGGCGTGTGTCTAGGTGGCTATCTGATCGAGACCACTGGCTCCTGGACCTGTGTGTT
CCACCTGGTGGCCATCGTCAGCAACCTGGGACTGGGCACCTTTCTGGTGTTTGGGAAGGCACAG
AGGGTGGACCTGGTACCCACTCATGAGGACCTCTAGCTTCCTGACGATCAGTCCCCAGGACATG
ACGTCAGCAGCCTAAAGACAACAACTCTGTCGGTGAAACTCTGGGAACTCCACCTCGGATGTAT
GAGCAGACAACAAGACCACAGTCTCCTGGGGAATCCAAATGAGTTGGAGAGATAGCCTGAGTGC
ACACAGGAGTAAGGTCATGACTCCACAAATGCTTGCTAGTCCTGGCTTCTCTCAGGTTCAGTGG
GACTGCTGCTGTTAAGGAAGATACATTGCCGATGGGAGGTCTCCACAGCCTCAGTCCATGAGGG
TTGTTTCCCCGACAAGATTTCTCTGTGTTAAGGATGCGTTGTGTGCTGGTAGATGTTCATGGGG
CAGTTCCAACCCCCACCTGCTCCAGGCATCTTCCTATCTCCATCTCTCCAGTAACGATACCCTA
AGAAGTCTGTAGACACTAGACCATGTCTCCATAAGACAGGCCCACAGTTCAAAACCACAGAGAA
GCCATGGTTTCTGCTTCTCTCCCAAAGTCAGGCTGCCACTCCAGCTGGGCCAGTGTGCGGTAGG
CTAGAGGTCCTTGCCTGCCTTTGCAGACCCTGGTTCCCATCCTGTGGATCTCTCAGCACTACTG
ATGTGTCCTGGGCTGGCAGGTGCCTGGAAGTCCTCAGGCTTTGCCTGGACACTCCAGACAGCAC
AGACCCCAGAACAAGGAGGAACACCCCCACCACACACACACACACACACACACACACACACACA
CCCATCTGGCCTTGTTTTTCTACCTCCCCTCTTATTCTTTGTAGAGCTGGTCATTTCATGAGCT
GATCATGAATTCTCCAAGATGCATATTAGATTATCTTTATAGATATGGTGAGTCTCGCCAGGGC
CTTATTTAAGTGAAAACCATTAAACTATTTAAATAT

hide sequence

RefSeq Acc Id:

XM_039105555 ⟹ XP_038961483

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,211,106 - 188,233,553 (+)	NCBI
mRatBN7.2	3	167,839,256 - 167,857,462 (+)	NCBI

RefSeq Acc Id:

XM_039105556 ⟹ XP_038961484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,211,106 - 188,233,553 (+)	NCBI
mRatBN7.2	3	167,839,246 - 167,857,462 (+)	NCBI

RefSeq Acc Id:

XM_039105558 ⟹ XP_038961486

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,217,067 - 188,233,553 (+)	NCBI
mRatBN7.2	3	167,839,387 - 167,857,462 (+)	NCBI

RefSeq Acc Id:

XM_039105559 ⟹ XP_038961487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,211,106 - 188,228,971 (+)	NCBI
mRatBN7.2	3	167,839,257 - 167,851,405 (+)	NCBI

RefSeq Acc Id:

XM_063284238 ⟹ XP_063140308

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,211,106 - 188,233,553 (+)	NCBI

RefSeq Acc Id:

XM_063284239 ⟹ XP_063140309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,211,106 - 188,233,553 (+)	NCBI

RefSeq Acc Id:

XM_063284240 ⟹ XP_063140310

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,211,106 - 188,233,553 (+)	NCBI

RefSeq Acc Id:

XM_063284241 ⟹ XP_063140311

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,223,353 - 188,233,553 (+)	NCBI

RefSeq Acc Id:

XR_010064669

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,211,106 - 188,231,942 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102083	(Get FASTA)	NCBI Sequence Viewer
	XP_038961483	(Get FASTA)	NCBI Sequence Viewer
	XP_038961484	(Get FASTA)	NCBI Sequence Viewer
	XP_038961486	(Get FASTA)	NCBI Sequence Viewer
	XP_038961487	(Get FASTA)	NCBI Sequence Viewer
	XP_063140308	(Get FASTA)	NCBI Sequence Viewer
	XP_063140309	(Get FASTA)	NCBI Sequence Viewer
	XP_063140310	(Get FASTA)	NCBI Sequence Viewer
	XP_063140311	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL88787	(Get FASTA)	NCBI Sequence Viewer
	EDL88788	(Get FASTA)	NCBI Sequence Viewer
	EDL88789	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013621
	ENSRNOP00000013621.4
	ENSRNOP00000104893
	ENSRNOP00055001423
	ENSRNOP00060001316
	ENSRNOP00065018776
GenBank Protein	P0DX21	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001102083 ⟸ NM_001108613

- UniProtKB:

P0DX21 (UniProtKB/Swiss-Prot), D3ZUN1 (UniProtKB/TrEMBL), A6KM79 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPSQRSSLMQPIPEETRKTPSAAAEDKRWSRPECQLWTGMLLLGTCLLYCTRVTMPVCTVAMSQ
DFGWNKKEAGIVLSSFFWGYCLTQVVGGHLGDRIGGEKVILLSASAWGFITVTTPLLAHLGSGH
LAFVTFSRILTGLLQGVYFPALTSLLSQRVQESERSFTYSTVGAGSQVGTLVTGGIGSVLLDRC
GWQSVFYFSGGLTLLWVYYVYKYLLDEKDLVLALGVLAQGLPVTRPSKVPWRQLFRKASVWAVI
CSQLSSACSFFILLSWLPTFFKETFPHSKGWVFNVVPWLLAIPASLFSGFISDRLISQGYRVIT
VRKFMQVMGLGLSSIFALCLGHTTSFLKSMIFASASIGFQTFNHSGISVNIQDLAPSCAGFLFG
VANTAGALAGVVGVCLGGYLIETTGSWTCVFHLVAIVSNLGLGTFLVFGKAQRVDLVPTHEDL

hide sequence

Ensembl Acc Id:

ENSRNOP00000013621 ⟸ ENSRNOT00000013623

RefSeq Acc Id:	XP_038961484 ⟸ XM_039105556
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038961483 ⟸ XM_039105555
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038961487 ⟸ XM_039105559
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038961486 ⟸ XM_039105558
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063140308 ⟸ XM_063284238
- Peptide Label:	isoform X2
- UniProtKB:	P0DX21 (UniProtKB/Swiss-Prot), A6KM79 (UniProtKB/TrEMBL), D3ZUN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140309 ⟸ XM_063284239
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063140310 ⟸ XM_063284240
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063140311 ⟸ XM_063284241
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000104893 ⟸ ENSRNOT00000166635

Ensembl Acc Id:

ENSRNOP00000101910 ⟸ ENSRNOT00000157261

Protein Domains

Major facilitator superfamily (MFS) profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZUN1-F1-model_v2	AlphaFold	D3ZUN1	1-447	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692741

Promoter ID:

EPDNEW_R3266

Type:

initiation region

Name:

Slc17a9_1

Description:

solute carrier family 17 member 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	176,230,414 - 176,230,474	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311940	AgrOrtholog
BioCyc Gene	G2FUF-46321	BioCyc
Ensembl Genes	ENSRNOG00000010275	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055001105	UniProtKB/Swiss-Prot
	ENSRNOG00060001442	UniProtKB/Swiss-Prot
	ENSRNOG00065014571	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000013623	ENTREZGENE
	ENSRNOT00000013623.6	UniProtKB/Swiss-Prot
	ENSRNOT00000166635	ENTREZGENE
	ENSRNOT00055001823	UniProtKB/Swiss-Prot
	ENSRNOT00060002121	UniProtKB/Swiss-Prot
	ENSRNOT00065024074	UniProtKB/Swiss-Prot
Gene3D-CATH	MFS general substrate transporter like domains	UniProtKB/Swiss-Prot
InterPro	MFS	UniProtKB/Swiss-Prot
	MFS_dom	UniProtKB/Swiss-Prot
	MFS_Na/Anion_cotransporter	UniProtKB/Swiss-Prot
	MFS_trans_sf	UniProtKB/Swiss-Prot
	SLC17A9-like	UniProtKB/Swiss-Prot
	Sugar_transporter_CS	UniProtKB/Swiss-Prot
KEGG Report	rno:362287	UniProtKB/Swiss-Prot
NCBI Gene	362287	ENTREZGENE
PANTHER	SOLUTE CARRIER FAMILY 17	UniProtKB/Swiss-Prot
	SOLUTE CARRIER FAMILY 17 MEMBER 9	UniProtKB/Swiss-Prot
Pfam	MFS_1	UniProtKB/Swiss-Prot
PhenoGen	Slc17a9	PhenoGen
PROSITE	MFS	UniProtKB/Swiss-Prot
	SUGAR_TRANSPORT_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000010275	RatGTEx
	ENSRNOG00055001105	RatGTEx
	ENSRNOG00060001442	RatGTEx
	ENSRNOG00065014571	RatGTEx
Superfamily-SCOP	MFS general substrate transporter	UniProtKB/Swiss-Prot
UniProt	A0ABK0LCI4_RAT	UniProtKB/TrEMBL
	A0ABK0LH66_RAT	UniProtKB/TrEMBL
	A6KM79	ENTREZGENE, UniProtKB/TrEMBL
	D3ZUN1	ENTREZGENE, UniProtKB/TrEMBL
	P0DX21	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-25	Slc17a9	solute carrier family 17 member 9	Slc17a9	solute carrier family 17 (vesicular nucleotide transporter), member 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc17a9	solute carrier family 17 (vesicular nucleotide transporter), member 9	Slc17a9	solute carrier family 17, member 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-23	Slc17a9	solute carrier family 17, member 9	RGD1311940	similar to bA305P22.2.1 (novel protein, isoform 1)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1311940	similar to bA305P22.2.1 (novel protein, isoform 1)	RGD1311940_predicted	similar to bA305P22.2.1 (novel protein, isoform 1) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1311940_predicted	similar to bA305P22.2.1 (novel protein, isoform 1) (predicted)	LOC362287_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362287_predicted	similar to bA305P22.2.1 (novel protein, isoform 1) (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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