Cpeb4 (cytoplasmic polyadenylation element binding protein 4) - Rat Genome Database

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Gene: Cpeb4 (cytoplasmic polyadenylation element binding protein 4) Rattus norvegicus
Analyze
Symbol: Cpeb4
Name: cytoplasmic polyadenylation element binding protein 4
RGD ID: 1311931
Description: Predicted to enable several functions, including mRNA 3'-UTR binding activity; mRNA regulatory element binding translation repressor activity; and translation factor activity, RNA binding. Predicted to be involved in cellular response to amino acid stimulus; negative regulation of cytoplasmic translation; and response to ischemia. Is active in postsynapse. Orthologous to human CPEB4 (cytoplasmic polyadenylation element binding protein 4); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cytoplasmic polyadenylation element-binding protein 4; hypothetical protein LOC685957; LOC303010; LOC685957
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,222,271 - 16,284,248 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1016,225,672 - 16,283,787 (-)EnsemblGRCr8
mRatBN7.21015,717,794 - 15,780,482 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,717,794 - 15,780,603 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1020,468,774 - 20,526,691 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,957,687 - 20,015,604 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,447,732 - 15,505,639 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,984,520 - 16,047,209 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,987,921 - 16,046,033 (-)Ensemblrn6Rnor6.0
Rnor_5.01015,878,712 - 15,941,331 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41015,968,782 - 16,026,700 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1015,387,558 - 15,445,515 (-)NCBICelera
RGSC_v3.11015,966,430 - 16,029,113 (-)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-butoxyethanol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aconitic acid  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fluoranthene  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
leflunomide  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N(gamma)-nitro-L-arginine methyl ester  (ISO)
N-nitrosodiethylamine  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
streptozocin  (ISO)
sulforaphane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
torcetrapib  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA,IEA,ISO)
dendrite  (IDA,ISO)
endoplasmic reticulum  (ISO)
neuron projection  (IBA)
nucleus  (IBA,IDA,IEA,ISO)
postsynapse  (IDA,IEP,IMP)
postsynaptic density  (ISO)
synapse  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Sequential Functions of CPEB1 and CPEB4 Regulate Pathologic Expression of Vascular Endothelial Growth Factor and Angiogenesis in Chronic Liver Disease. Calderone V, etal., Gastroenterology. 2016 Apr;150(4):982-97.e30. doi: 10.1053/j.gastro.2015.11.038. Epub 2015 Nov 26.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. CPEB3 and CPEB4 in neurons: analysis of RNA-binding specificity and translational control of AMPA receptor GluR2 mRNA. Huang YS, etal., EMBO J. 2006 Oct 18;25(20):4865-76. doi: 10.1038/sj.emboj.7601322. Epub 2006 Oct 5.
4. CPEB4 is a cell survival protein retained in the nucleus upon ischemia or endoplasmic reticulum calcium depletion. Kan MC, etal., Mol Cell Biol. 2010 Dec;30(24):5658-71. doi: 10.1128/MCB.00716-10. Epub 2010 Oct 11.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20639532   PMID:22658674   PMID:22681889   PMID:31505169  


Genomics

Comparative Map Data
Cpeb4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,222,271 - 16,284,248 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1016,225,672 - 16,283,787 (-)EnsemblGRCr8
mRatBN7.21015,717,794 - 15,780,482 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,717,794 - 15,780,603 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1020,468,774 - 20,526,691 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,957,687 - 20,015,604 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,447,732 - 15,505,639 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,984,520 - 16,047,209 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,987,921 - 16,046,033 (-)Ensemblrn6Rnor6.0
Rnor_5.01015,878,712 - 15,941,331 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41015,968,782 - 16,026,700 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1015,387,558 - 15,445,515 (-)NCBICelera
RGSC_v3.11015,966,430 - 16,029,113 (-)NCBI
Cytogenetic Map10q12NCBI
CPEB4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385173,888,349 - 173,961,980 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5173,888,349 - 173,961,980 (+)Ensemblhg38GRCh38
GRCh375173,315,352 - 173,388,983 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365173,248,795 - 173,319,917 (+)NCBIBuild 36Build 36hg18NCBI36
Build 345173,248,794 - 173,319,916NCBI
Celera5169,347,869 - 169,419,849 (+)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5168,411,765 - 168,483,739 (+)NCBIHuRef
CHM1_15172,747,994 - 172,819,976 (+)NCBICHM1_1
T2T-CHM13v2.05174,428,718 - 174,502,324 (+)NCBIT2T-CHM13v2.0
Cpeb4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,820,911 - 31,885,635 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,822,211 - 31,885,634 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381131,870,104 - 31,935,635 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,872,211 - 31,935,634 (+)Ensemblmm10GRCm38
MGSCv371131,772,211 - 31,831,577 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361131,772,211 - 31,831,577 (+)NCBIMGSCv36mm8
Celera1134,286,176 - 34,345,581 (+)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.66NCBI
Cpeb4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540826,535,281 - 26,597,547 (+)Ensembl
ChiLan1.0NW_00495540826,535,281 - 26,597,317 (+)NCBIChiLan1.0ChiLan1.0
CPEB4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24169,011,203 - 169,083,145 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15167,150,748 - 167,222,687 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05169,228,648 - 169,300,612 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15176,133,495 - 176,205,388 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5176,133,495 - 176,205,388 (+)EnsemblpanPan2panpan1.1
CPEB4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1438,604,065 - 38,665,200 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl438,607,948 - 38,664,821 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha438,550,358 - 38,612,106 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0438,969,498 - 39,036,812 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1438,793,794 - 38,855,396 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0438,981,894 - 39,043,694 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0439,490,610 - 39,552,379 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cpeb4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,070,348 - 93,135,914 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366091,793,027 - 1,858,597 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366091,793,027 - 1,858,586 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPEB4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1650,430,348 - 50,498,938 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11650,430,345 - 50,499,086 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21654,790,587 - 54,877,707 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPEB4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12376,039,118 - 76,110,564 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2376,040,516 - 76,106,360 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660342,494,613 - 2,566,116 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpeb4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473316,082,369 - 16,147,075 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473316,082,461 - 16,146,798 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cpeb4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v194,000,613 - 4,063,221 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cpeb4
349 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:82
Interacting mature miRNAs:111
Transcripts:ENSRNOT00000064832
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101577675460776754Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101553301273695498Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)101576223019737486Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
2298495Eae23Experimental allergic encephalomyelitis QTL 2316.93nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)101617552561175525Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
BE102188  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21015,728,572 - 15,728,744 (+)MAPPERmRatBN7.2
Rnor_6.01015,995,298 - 15,995,469NCBIRnor6.0
Rnor_5.01015,889,490 - 15,889,661UniSTSRnor5.0
RGSC_v3.41015,976,159 - 15,976,330UniSTSRGSC3.4
Celera1015,394,939 - 15,395,110UniSTS
RH 3.4 Map10152.2UniSTS
Cytogenetic Map10q12UniSTS
BI293756  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21015,762,078 - 15,762,236 (+)MAPPERmRatBN7.2
Rnor_6.01016,028,803 - 16,028,960NCBIRnor6.0
Rnor_5.01015,922,995 - 15,923,152UniSTSRnor5.0
RGSC_v3.41016,009,667 - 16,009,824UniSTSRGSC3.4
Celera1015,428,483 - 15,428,640UniSTS
RH 3.4 Map10149.76UniSTS
Cytogenetic Map10q12UniSTS
BE121203  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21015,758,900 - 15,759,088 (+)MAPPERmRatBN7.2
Rnor_6.01016,025,625 - 16,025,812NCBIRnor6.0
Rnor_5.01015,919,817 - 15,920,004UniSTSRnor5.0
RGSC_v3.41016,006,489 - 16,006,676UniSTSRGSC3.4
Celera1015,425,305 - 15,425,492UniSTS
RH 3.4 Map10155.4UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000064832   ⟹   ENSRNOP00000060861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1016,225,672 - 16,283,787 (-)Ensembl
mRatBN7.2 Ensembl1015,721,195 - 15,780,603 (-)Ensembl
Rnor_6.0 Ensembl1015,987,921 - 16,045,835 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089460   ⟹   ENSRNOP00000072827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1016,225,672 - 16,283,787 (-)Ensembl
mRatBN7.2 Ensembl1015,721,195 - 15,780,603 (-)Ensembl
Rnor_6.0 Ensembl1015,988,386 - 16,046,033 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101157   ⟹   ENSRNOP00000088235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1016,225,672 - 16,283,787 (-)Ensembl
mRatBN7.2 Ensembl1015,717,794 - 15,780,603 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111320   ⟹   ENSRNOP00000076916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1016,225,672 - 16,283,787 (-)Ensembl
mRatBN7.2 Ensembl1015,717,794 - 15,780,603 (-)Ensembl
RefSeq Acc Id: NM_001106992   ⟹   NP_001100462
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81016,225,672 - 16,283,588 (-)NCBI
mRatBN7.21015,721,195 - 15,779,112 (-)NCBI
Rnor_6.01015,987,921 - 16,045,835 (-)NCBI
Rnor_5.01015,878,712 - 15,941,331 (-)NCBI
RGSC_v3.41015,968,782 - 16,026,700 (-)RGD
Celera1015,387,558 - 15,445,515 (-)RGD
Sequence:
RefSeq Acc Id: XM_006245978   ⟹   XP_006246040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81016,222,271 - 16,284,248 (-)NCBI
mRatBN7.21015,717,794 - 15,779,112 (-)NCBI
Rnor_6.01015,984,520 - 16,047,209 (-)NCBI
Rnor_5.01015,878,712 - 15,941,331 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245979   ⟹   XP_006246041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81016,222,271 - 16,284,248 (-)NCBI
mRatBN7.21015,717,794 - 15,780,482 (-)NCBI
Rnor_6.01015,984,520 - 16,047,209 (-)NCBI
Rnor_5.01015,878,712 - 15,941,331 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245980   ⟹   XP_006246042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81016,222,271 - 16,284,248 (-)NCBI
mRatBN7.21015,717,794 - 15,780,482 (-)NCBI
Rnor_6.01015,984,520 - 16,047,209 (-)NCBI
Rnor_5.01015,878,712 - 15,941,331 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039085883   ⟹   XP_038941811
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81016,222,271 - 16,247,315 (-)NCBI
mRatBN7.21015,717,794 - 15,735,902 (-)NCBI
RefSeq Acc Id: XM_063268952   ⟹   XP_063125022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81016,222,271 - 16,247,315 (-)NCBI
RefSeq Acc Id: NP_001100462   ⟸   NM_001106992
- UniProtKB: D3ZKL3 (UniProtKB/TrEMBL),   A6HDC7 (UniProtKB/TrEMBL),   A0A8I6A633 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006246040   ⟸   XM_006245978
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K3Y6 (UniProtKB/TrEMBL),   A0A8I5ZK67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006246042   ⟸   XM_006245980
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A633 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006246041   ⟸   XM_006245979
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZK67 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072827   ⟸   ENSRNOT00000089460
Ensembl Acc Id: ENSRNOP00000060861   ⟸   ENSRNOT00000064832
RefSeq Acc Id: XP_038941811   ⟸   XM_039085883
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000076916   ⟸   ENSRNOT00000111320
Ensembl Acc Id: ENSRNOP00000088235   ⟸   ENSRNOT00000101157
RefSeq Acc Id: XP_063125022   ⟸   XM_063268952
- Peptide Label: isoform X4
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K3Y6-F1-model_v2 AlphaFold A0A0G2K3Y6 1-729 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311931 AgrOrtholog
BioCyc Gene G2FUF-25681 BioCyc
Ensembl Genes ENSRNOG00000033169 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064832 ENTREZGENE
  ENSRNOT00000064832.4 UniProtKB/TrEMBL
  ENSRNOT00000089460 ENTREZGENE
  ENSRNOT00000089460.3 UniProtKB/TrEMBL
  ENSRNOT00000101157.2 UniProtKB/TrEMBL
  ENSRNOT00000111320 ENTREZGENE
  ENSRNOT00000111320.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  4.10.640.40 UniProtKB/TrEMBL
InterPro CEBP_ZZ UniProtKB/TrEMBL
  CEBP_ZZ_sf UniProtKB/TrEMBL
  CPEB UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_RNP1 UniProtKB/TrEMBL
KEGG Report rno:303010 UniProtKB/TrEMBL
NCBI Gene 303010 ENTREZGENE
PANTHER CYTOPLASMIC POLYADENYLATION ELEMENT-BINDING PROTEIN 4 UniProtKB/TrEMBL
  PTHR12566 UniProtKB/TrEMBL
Pfam CEBP_ZZ UniProtKB/TrEMBL
  RRM_7 UniProtKB/TrEMBL
PhenoGen Cpeb4 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000033169 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0G2K3Y6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZK67 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A633 ENTREZGENE, UniProtKB/TrEMBL
  A6HDC7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZKL3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Cpeb4  cytoplasmic polyadenylation element binding protein 4  LOC685957  hypothetical protein LOC685957  Data merged from RGD:1587818 737654 PROVISIONAL
2008-04-30 Cpeb4  cytoplasmic polyadenylation element binding protein 4   Cpeb4_predicted  cytoplasmic polyadenylation element binding protein 4 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC685957  hypothetical protein LOC685957      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Cpeb4_predicted  cytoplasmic polyadenylation element binding protein 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED