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Gene: Zfr (zinc finger RNA binding protein) Rattus norvegicus

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Symbol:

Zfr

Name:

zinc finger RNA binding protein

RGD ID:

1311890

Description:

Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. Predicted to be located in chromosome; cytoplasm; and nucleus. Orthologous to human ZFR (zinc finger RNA binding protein); INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC365703; zinc finger RNA-binding protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZFR (zinc finger RNA binding protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Mus musculus (house mouse):	Zfr (zinc finger RNA binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zfr (zinc finger RNA binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZFR (zinc finger RNA binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZFR (zinc finger RNA binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zfr (zinc finger RNA binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZFR (zinc finger RNA binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZFR (zinc finger RNA binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zfr (zinc finger RNA binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Zfr (zinc finger RNA binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZFR (zinc finger RNA binding protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfr (zinc finger RNA binding protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zfr (zinc finger RNA binding protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y95B8A.8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y95B8A.8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Zn72D	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Zn72D	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zfr	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	62,864,333 - 62,927,377 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	62,864,338 - 62,929,133 (+)	Ensembl				GRCr8
mRatBN7.2	2	61,137,611 - 61,200,322 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	61,137,611 - 61,200,322 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	68,273,575 - 68,336,149 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	66,387,272 - 66,449,689 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	61,388,614 - 61,451,145 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	62,150,251 - 62,213,048 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	62,150,251 - 62,213,048 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	82,476,651 - 82,539,546 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	61,578,795 - 61,641,287 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	57,494,326 - 57,556,779 (-)	NCBI		Celera
RGSC_v3.1	2	61,507,932 - 61,568,205 (+)	NCBI
Cytogenetic Map	2	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hereditary spastic paraplegia (ISO)

intellectual disability (ISO)

Neoplasm Invasiveness (ISO)

Thyroid Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

casticin (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

cyclophosphamide (EXP)

cyclosporin A (ISO)

DDE (ISO)

decabromodiphenyl ether (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

fonofos (ISO)

geldanamycin (ISO)

gentamycin (EXP)

haloperidol (ISO)

hydralazine (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

ivermectin (ISO)

levonorgestrel (ISO)

lithium atom (ISO)

lithium hydride (ISO)

manganese(II) chloride (EXP)

Mecamylamine (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

nicotine (ISO)

nitrates (ISO)

Nivalenol (ISO)

parathion (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

progesterone (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

succimer (ISO)

sulfadimethoxine (EXP)

terbufos (ISO)

testosterone undecanoate (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

torcetrapib (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

tubocurarine (ISO)

tungsten (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

chromosome (IEA)

cytoplasm (IEA)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

double-stranded RNA binding (IBA)

nucleic acid binding (IEA)

protein binding (IPI,ISO)

RNA binding (IEA)

single-stranded RNA binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	The zinc-finger protein ZFR is critical for Staufen 2 isoform specific nucleocytoplasmic shuttling in neurons.	Elvira G, etal., J Neurochem. 2006 Jan;96(1):105-17. Epub 2005 Nov 8.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:22658674	PMID:22681889	PMID:30053369

Genomics

Comparative Map Data

Zfr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	62,864,333 - 62,927,377 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	62,864,338 - 62,929,133 (+)	Ensembl				GRCr8
mRatBN7.2	2	61,137,611 - 61,200,322 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	61,137,611 - 61,200,322 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	68,273,575 - 68,336,149 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	66,387,272 - 66,449,689 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	61,388,614 - 61,451,145 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	62,150,251 - 62,213,048 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	62,150,251 - 62,213,048 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	82,476,651 - 82,539,546 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	61,578,795 - 61,641,287 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	57,494,326 - 57,556,779 (-)	NCBI		Celera
RGSC_v3.1	2	61,507,932 - 61,568,205 (+)	NCBI
Cytogenetic Map	2	q16	NCBI

ZFR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	32,354,350 - 32,444,740 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	32,354,350 - 32,444,761 (-)	Ensembl			hg38	GRCh38
GRCh37	5	32,354,456 - 32,444,846 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	32,390,213 - 32,480,601 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	32,390,213 - 32,480,601	NCBI
Celera	5	32,236,180 - 32,326,535 (-)	NCBI		Celera
Cytogenetic Map	5	p13.3	NCBI
HuRef	5	32,321,365 - 32,411,643 (-)	NCBI		HuRef
CHM1_1	5	32,356,348 - 32,446,993 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	32,468,061 - 32,558,413 (-)	NCBI		T2T-CHM13v2.0

Zfr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	12,117,649 - 12,185,535 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	12,117,917 - 12,185,769 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	12,117,563 - 12,185,449 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	12,117,831 - 12,185,683 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	12,047,606 - 12,115,204 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	12,062,578 - 12,129,188 (+)	NCBI		MGSCv36	mm8
Celera	15	11,897,447 - 11,964,826 (+)	NCBI		Celera
Cytogenetic Map	15	A1	NCBI
cM Map	15	5.9	NCBI

Zfr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	18,198,932 - 18,255,774 (-)	Ensembl
ChiLan1.0	NW_004955426	18,198,932 - 18,257,340 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZFR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	77,859,596 - 77,950,206 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	76,013,404 - 76,103,836 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	77,890,015 - 77,980,332 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	83,295,837 - 83,363,027 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	83,295,040 - 83,361,615 (+)	Ensembl			panPan2	panpan1.1

ZFR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	75,038,248 - 75,124,154 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	74,982,467 - 75,123,053 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	74,674,790 - 74,761,869 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	75,558,006 - 75,645,130 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	75,558,026 - 75,645,130 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	75,295,219 - 75,382,247 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	75,424,065 - 75,511,076 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	75,954,509 - 76,041,579 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zfr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	222,929,561 - 223,004,478 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936518	8,367,479 - 8,440,851 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936518	8,367,396 - 8,442,271 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZFR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	18,560,280 - 18,656,294 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	18,561,909 - 18,656,341 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ZFR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	31,635,430 - 31,723,164 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	31,636,851 - 31,723,078 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	21,862,839 - 21,950,811 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zfr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	22,135,358 - 22,207,442 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624759	22,135,431 - 22,207,283 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zfr
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	168,911,447 - 168,973,913 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfr
486 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	463
Count of miRNA genes:	234
Interacting mature miRNAs:	311
Transcripts:	ENSRNOT00000016196
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578777	Stresp15	Stress response QTL 15	2	0.05	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	2	61556902	106556902	Rat
6480225	Gdil1	Gastrointestinal dilation QTL 1			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	58388201	77302351	Rat
631500	Bp99	Blood pressure QTL 99	2.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	61051883	104684275	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	24117813	69117813	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
5684996	Bmd85	Bone mineral density QTL 85	4.7	0.024	tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	2	61051541	105724065	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	41801363	104744824	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
631208	Bw1	Body weight QTL1	5.09		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	2	44904355	85286097	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	44537979	112567334	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
5684990	Bmd82	Bone mineral density QTL 82	2.8		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	2	61051541	105724065	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
1359034	Bp274	Blood pressure QTL 274			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	51266859	96266859	Rat
1558648	Smcn1	Smooth muscle cell number QTL 1		0.039	blood vessel smooth muscle cell quantity (VT:0010525)	aorta smooth muscle cell count per unit vessel length (CMO:0001646)	2	60861391	105861391	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	38426449	111295694	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	44904355	89904355	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	61051541	143746880	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Markers in Region

RH129361

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	62,926,859 - 62,927,065 (+)	Marker Load Pipeline
mRatBN7.2	2	61,199,804 - 61,200,010 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	62,212,531 - 62,212,736	NCBI	Rnor6.0
Rnor_5.0	2	82,476,963 - 82,477,168	UniSTS	Rnor5.0
RGSC_v3.4	2	61,640,999 - 61,641,204	UniSTS	RGSC3.4
Celera	2	57,494,638 - 57,494,843	UniSTS
Cytogenetic Map	2	q16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001270972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010063629	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016196 ⟹ ENSRNOP00000016196

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	62,864,823 - 62,927,146 (+)	Ensembl
mRatBN7.2 Ensembl	2	61,137,611 - 61,200,322 (+)	Ensembl
Rnor_6.0 Ensembl	2	62,150,251 - 62,213,048 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080241 ⟹ ENSRNOP00000075053

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	62,864,798 - 62,927,138 (+)	Ensembl
mRatBN7.2 Ensembl	2	61,137,611 - 61,200,322 (+)	Ensembl
Rnor_6.0 Ensembl	2	62,150,493 - 62,211,504 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087636 ⟹ ENSRNOP00000073762

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	62,864,844 - 62,927,140 (+)	Ensembl
mRatBN7.2 Ensembl	2	61,137,729 - 61,200,322 (+)	Ensembl
Rnor_6.0 Ensembl	2	62,198,562 - 62,212,623 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000130981 ⟹ ENSRNOP00000108457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	62,864,807 - 62,929,133 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167486 ⟹ ENSRNOP00000110029

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	62,864,338 - 62,926,042 (+)	Ensembl

RefSeq Acc Id:

NM_001270972 ⟹ NP_001257901

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	62,864,672 - 62,927,377 (+)	NCBI
mRatBN7.2	2	61,137,611 - 61,200,322 (+)	NCBI
Rnor_6.0	2	62,150,251 - 62,213,048 (+)	NCBI
Rnor_5.0	2	82,476,651 - 82,539,546 (-)	NCBI
Celera	2	57,494,326 - 57,556,779 (-)	NCBI

Sequence:

show sequence

CCACGAGGGAACTCCACACCCGCACCCCACAAATCTGCCCCTCAGGGGCACCCTGCGCCAGCCC
CGGGGTGGGGGTGGGGGTTGGCGTGGGGCGTGAGGACTACATCTCCCAGGATGCATCGCACTAG
CGCGCTTGCGCTGTGCGGCCGGCGGCGGCGGTCTGTTCTCCGCTGAGGAGGAGTGGGGCAGAGG
AGGGAGGCAGCGGGTGAGAGTTCAGAGTTCAGCAGCAGCAGCCCGAGCCCATGATTCCCATATG
CCCTGTAGTTTCTTTCACCTATGTGCCCAGCCGGCTGGGGGAAGATGCCAAAATGGCGACCGGC
AACTACTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAGTATAGCCAGC
AGCCAGCTTCGGGTGTAGCCTATTCCCATCCAACTACTGTTGCTAGCTACACTGTCCATCAGGC
TCCAGTAGCTGCTCACACAGTTACTGCTGCTTACGCACCAGCAGCCGCCACAGTTGCAGTTGCC
AGGCCTGCTCCAGTTGCTGTTGCAGCTGCTGCAACAGCTGCTGCTTATGGAGGCTACCCCACTG
CACACACAGCAACCGACTATGGTTACACCCAGAGGCAACAAGAAGCACCACCACCACCACCCCC
AGCTACTACACAGAACTACCAGGACTCATACTCGTATGTAAGATCCACAGCCCCTGCTGTGGCT
TATGATAGTAAGCAGTACTACCAACAGCCCACAGCAACTGCTGCTGCAGTGGCTGCTGCTGCCC
AGCCTCAGCCTTCGGTTGCTGAAACCTACTATCAGACAGCTCCTAAAGCAGGTTATAGTCAAGG
TGCAACACAGTATACTCAAGCCCAGCAAGCTCGACAAGTGACAGCCATAAAACCAGCCACCCCA
AGTCCAGCTACCACTACTTTCTCCATTTATCCTGTGTCCTCCACTGTACAGCCAGTGGCAGCTG
CGGCTACTGTGGTACCGTCCTATACTCAGAGTGCTACTTACAGTACCACAGCAGTTACTTACTC
CGGTACATCTTATTCAGGTTATGAAGCAGCCGTATATTCAGCTGCGTCTTCCTACTACCAACAG
CAGCAGCAGCAACAGAAGCAAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAACAGCTGCCTGGA
CAGGGACCACCTTTACTAAAAAAACACCATTCCAAAATAAACAACTGAAACCAAAACAGCCTCC
CAAACCACCCCAGATTCATTATTGTGATGTTTGTAAGATCAGCTGTGCTGGACCACAGACTTAT
AAAGAGCACTTAGAAGGACAGAAACATAAAAAAAAGGAAGCCGCATTGAAAGCCTCTCAAAATA
CCAGCAGCAGCAACAACTCAACTCGTGGGACACAAAATCAGCTACGTTGCGAGCTCTGTGATGT
GTCTTGTACAGGAGCAGATGCATATGCTGCCCACATTCGTGGTGCTAAGCATCAGAAAGTGGTT
AAATTACACACAAAACTTGGTAAACCTATTCCTTCAACGGAACCAAATGTTGTTAGCCAAGCTA
CTTCTTCAACAGCTGTATCTGCTTCAAAACCAACTGCCTCTCCTTCAAGTATTGGAGCAAGCAA
TTGTACTCTGAACACGTCATCAATTGCAACTACTTCAGTGAAAGGTCTTTCAACTACAGGAAAC
TCGTCTCTTAATAGTACATCCAACACTAAAGTGTCAGCGGTACCTACCAATATGGCTGCCAAGA
AAACATCTACACCCAAAATAAACTTTGTTGGTGGAAATAAGCTACAGTCAACAGGAAATAAAGC
TGAAGACTTAAAAGGAACTGACTGCATTAAAAATAATCCTGCTGCCTCTGCTGTACAGATTCCA
GAAGTAAAGCAAGATGCAGTGTCAGAACCAGTCACACCTGCATCCCTTGCTGCTTTGCAGAGTG
ATGTGCAACCAGTGGGACATGATTATGTTGAAGAGGTACGAAATGATGAAGGAAAAGTCATTCG
CTTCCATTGTAAATTATGTGAATGCAGCTTTAATGACCCCAATGCTAAAGAGATGCACCTAAAA
GGACGAAGACATAGACTTCAGTATAAAAAAAAAGTAAATCCAGATTTGCAAGTGGAAGTGAAGC
CCAGTATTCGTGCAAGAAAGATTCAAGAAGAGAAAATGAGAAAGCAAATGCAGAAGGAAGAGTA
CTGGCGGAGACGAGAAGAAGAGGAGCGCTGGAGGATGGAAATAAGACGTTATGAAGAAGACATG
TACTGGAGAAGAATGGAGGAAGAACAGCATCATTGGGATGATCGCCGACGAATGCCTGATGGAG
GCTATCCTCATGGGCCTCCAGGTCCATTAGGTCTTTTGGGAGTCCGACCAGGCATGCCTCCCCA
GCCACAGGGCCCTGCACCCTTACGTCGCCCTGACTCATCTGATGATCGTTATGTAATGACAAAG
CATGCAACTATTTATCCAACGGAAGAAGAGTTACAAGCAGTTCAGAAAATTGTTTCTATCACTG
AACGTGCTTTAAAGCTTGTTTCAGACAGTTTGTCTGAACATGAGAAGAGCAAGAATAAAGAGGG
AGATGATAAGAAAGAGGGAGGTAAAGACAGAGCTCTGAAAGGGGTGTTGCGAGTAGGAGTATTG
GCAAAAGGATTGCTTCTCCGAGGAGACAGAAATGTCAACCTTGTTTTGCTGTGTTCAGAAAAAC
CTTCCAAGTCATTATTAAGCCGTATTGCAGAAAACCTACCCAAACAGCTTGCTGTTATAAGTCC
TGAGAAGTATGACATAAAATGTGCGGTGTCTGAGGCAGCGATCATTTTGAACTCGTGTGTGGAA
CCCAAAATGCAAGTCACTATCACCCTGACATCTCCAATTATTCGAGAAGAGAACATGAGGGAAG
GAGATGTAACCTCGGGTATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGA
CGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAGGCTAGAGCTAATGGCCTACAGTCCTGT
GTGATTATCATACGTATTCTCCGAGACCTTTGTCAGCGAGTTCCAACATGGTCTGATTTTCCTA
GCTGGGCTATGGAGTTACTGGTAGAGAAAGCAATTAGCAGTGCTTCTAGTCCTCAAAGCCCTGG
AGATGCCCTGAGAAGAGTATTTGAGTGCATTTCTTCAGGGATTATTCTCAAAGGCAGCCCTGGA
CTTCTGGATCCTTGTGAAAAGGATCCCTTTGATACTTTGGCAACAATGACTGACCAACAGCGTG
AAGACATTACATCCAGTGCACAGTTTGCATTGAGACTCCTTGCATTCCGTCAGATACACAAAGT
TCTGGGAATGGATCCATTACCACAAATGAATCAACGCTTTAATATCCACAACAACAGGAAACGA
AGAAGGGATAGTGATGGAGTGGATGGATTTGAAGCTGAGGGGAAAAAAGACAAAAAGGATTATG
ATAACTTTTAAAAAGTTTGTGTAAATCTTCAGTGTTACAATAGGTGCCAGTTATTGGCTGTTTT
CCATTCATAATAATGTCTACTTTAAAAGTTTATCAAGAATATAAAGAGTTTCATGGAAGAACCA
AGTTTTTCTATGATATTAAAAACTTATTGTACAGTGTCAGGTATTATATGGATGGAAAGACGTT
GGAAAATAAATTTGACTAGGGGAAGTATAGTGGTTCCCCTCCCTTTTTTCCCCCATTATTTTAT
TGACTGGTTGCCCTTGCCCCCTGTATTTTTGTGTCTTTTATTAACTAGTGCATTGTGTTATTAA
ATCTTTACTGTATTTAATGCAGGATTTGTGCTTCAGTTGCTCCGTGTATTTTGATACTTTTATT
TAGAAGTTTTGTTTGCTTTGACACCAGTTGTAAGTTACTGTGTTCCAGGTGATATCCTTTACCC
CTTACTACTTTACAGCAGTGCGTCTTTTTGTAACGTGAAACTGCAGACTTTCTTCCTTTGTTAC
TCTGTATGTGAAGGATTTCAATACAAAAAGCTACCCTGCCATCTAAGTGCTCAGAACTAGGTGT
TTCTGCAGATCTTGTGGCATTTGTCTATCTAGTGTGATATATAAAGGTGTAATTAAGACAAATT
CGTTAATCTAATCAAGTTTGCTGTTAGTTGTGCATTAGCAGTATAAAAGCTAATATATATTATA
TGGTCTTGCAACAGTTTTAAAGCCTCTGCATAATTGATAATAAAATGCATGACATTTTTGTTTT
TAATAGACATTTAAAATAATTTTAGGTTTAACACGTAGATCTTTGTACAGTTGACTTTTTGACA
TAGCAAGGCCAAAAATAACTTTCTGAATACTTTTTCTTCTGTACAAGTGGAAAGGGAATTTCTC
ACATATAAGTGGGCTATTGTTTTCAGAAGAACTTCATCATTGTGCAACTAACAATAACTAGCCC
TAATTATGTGACAGTTCCTTATTGATATGTGTGCAATTACTCTAGCAGCTTCTACAGTATAACA
CAGTTGAATGATCCCCATACATCCTATCACTCAGATCATTTATAGGTCTATTAACTGTGAGATT
GATAAAGTATTACTGATTTAAGAAAAATAAGAGTATCTAAGGAAAAAAAAAAAAACAGAAAATT
ATTTGGTGTGGCCATCCTCCATGCTTACGTCTTATACAGAGTGCTAACCCCTAGCAGTGGTGTA
ATGAGTTACAGCCTACTGCGATGTATGTGTGCTCTGGTGCACAGATGTCGTTTTGTTGTCACAG
CACTACAGTGAGATACAGAAATAAAGACTTAAATTCATAGAATGACTTACTTGTATTATGTGGT
AGGCTTGATGGTGATAACTTTTGCTTGATACTCCTTACGCTTCAGTCAAACTGTATTCATATAT
ACTGTGTATGTATGTGTTACTCCTGACAAGTGTGTGTTGGTGGATCACATAATTCTAAAAGTTT
TTTAGGTTTCATCACCATATTGGTTCATTTTTCTAGGGTGGAGCCCTTACCCAAACCAAAGTAT
ACAAGACTGGCATTTTTGC

hide sequence

RefSeq Acc Id:

XM_006232054 ⟹ XP_006232116

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	62,864,619 - 62,927,144 (+)	NCBI
mRatBN7.2	2	61,137,737 - 61,200,102 (+)	NCBI
Rnor_6.0	2	62,150,358 - 62,212,815 (+)	NCBI
Rnor_5.0	2	82,476,651 - 82,539,546 (-)	NCBI

Sequence:

show sequence

TCCCAGGATGCATCGCACTAGCGCGCTTGCGCTGTGCGGCCGGCGGCGGCGGTCTGTTCTCCGC
TGAGGAGGAGTGGGGCAGAGGAGGGAGGCAGCGGGTGAGAGTTCAGAGTTCAGCAGCAGCAGCC
CGAGCCCATGATTCCCATATGCCCTGTAGTTTCTTTCACCTATGCCAGCAGCCAGCTTCGGGTG
TAGCCTATTCCCATCCAACTACTGTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCA
CACAGTTACTGCTGCTTACGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTT
GCTGTTGCAGCTGCTGCAACAGCTGCTGCTTATGGAGGCTACCCCACTGCACACACAGCAACCG
ACTATGGTTACACCCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAGAA
CTACCAGGACTCATACTCGTATGTAAGATCCACAGCCCCTGCTGTGGCTTATGATAGTAAGCAG
TACTACCAACAGCCCACAGCAACTGCTGCTGCAGTGGCTGCTGCTGCCCAGCCTCAGCCTTCGG
TTGCTGAAACCTACTATCAGACAGCTCCTAAAGCAGGTTATAGTCAAGGTGCAACACAGTATAC
TCAAGCCCAGCAAGCTCGACAAGTGACAGCCATAAAACCAGCCACCCCAAGTCCAGCTACCACT
ACTTTCTCCATTTATCCTGTGTCCTCCACTGTACAGCCAGTGGCAGCTGCGGCTACTGTGGTAC
CGTCCTATACTCAGAGTGCTACTTACAGTACCACAGCAGTTACTTACTCCGGTACATCTTATTC
AGGTTATGAAGCAGCCGTATATTCAGCTGCGTCTTCCTACTACCAACAGCAGCAGCAGCAACAG
AAGCAAGCAGCAGCAGCAGCTGCTGCTGCAGCAGCAACAGCTGCCTGGACAGGGACCACCTTTA
CTAAAAAAACACCATTCCAAAATAAACAACTGAAACCAAAACAGCCTCCCAAACCACCCCAGAT
TCATTATTGTGATGTTTGTAAGATCAGCTGTGCTGGACCACAGACTTATAAAGAGCACTTAGAA
GGACAGAAACATAAAAAAAAGGAAGCCGCATTGAAAGCCTCTCAAAATACCAGCAGCAGCAACA
ACTCAACTCGTGGGACACAAAATCAGCTACGTTGCGAGCTCTGTGATGTGTCTTGTACAGGAGC
AGATGCATATGCTGCCCACATTCGTGGTGCTAAGCATCAGAAAGTGGTTAAATTACACACAAAA
CTTGGTAAACCTATTCCTTCAACGGAACCAAATGTTGTTAGCCAAGCTACTTCTTCAACAGCTG
TATCTGCTTCAAAACCAACTGCCTCTCCTTCAAGTATTGGAGCAAGCAATTGTACTCTGAACAC
GTCATCAATTGCAACTACTTCAGTGAAAGGTCTTTCAACTACAGGAAACTCGTCTCTTAATAGT
ACATCCAACACTAAAGTGTCAGCGGTACCTACCAATATGGCTGCCAAGAAAACATCTACACCCA
AAATAAACTTTGTTGGTGGAAATAAGCTACAGTCAACAGGAAATAAAGCTGAAGACTTAAAAGG
AACTGACTGCATTAAAAATAATCCTGCTGCCTCTGCTGTACAGATTCCAGAAGTAAAGCAAGAT
GCAGTGTCAGAACCAGTCACACCTGCATCCCTTGCTGCTTTGCAGAGTGATGTGCAACCAGTGG
GACATGATTATGTTGAAGAGGTACGAAATGATGAAGGAAAAGTCATTCGCTTCCATTGTAAATT
ATGTGAATGCAGCTTTAATGACCCCAATGCTAAAGAGATGCACCTAAAAGGACGAAGACATAGA
CTTCAGTATAAAAAAAAAGTAAATCCAGATTTGCAAGTGGAAGTGAAGCCCAGTATTCGTGCAA
GAAAGATTCAAGAAGAGAAAATGAGAAAGCAAATGCAGAAGGAAGAGTACTGGCGGAGACGAGA
AGAAGAGGAGCGCTGGAGGATGGAAATAAGACGTTATGAAGAAGACATGTACTGGAGAAGAATG
GAGGAAGAACAGCATCATTGGGATGATCGCCGACGAATGCCTGATGGAGGCTATCCTCATGGGC
CTCCAGGTCCATTAGGTCTTTTGGGAGTCCGACCAGGCATGCCTCCCCAGCCACAGGGCCCTGC
ACCCTTACGTCGCCCTGACTCATCTGATGATCGTTATGTAATGACAAAGCATGCAACTATTTAT
CCAACGGAAGAAGAGTTACAAGCAGTTCAGAAAATTGTTTCTATCACTGAACGTGCTTTAAAGC
TTGTTTCAGACAGTTTGTCTGAACATGAGAAGAGCAAGAATAAAGAGGGAGATGATAAGAAAGA
GGGAGGTAAAGACAGAGCTCTGAAAGGGGTGTTGCGAGTAGGAGTATTGGCAAAAGGATTGCTT
CTCCGAGGAGACAGAAATGTCAACCTTGTTTTGCTGTGTTCAGAAAAACCTTCCAAGTCATTAT
TAAGCCGTATTGCAGAAAACCTACCCAAACAGCTTGCTGTTATAAGTCCTGAGAAGTATGACAT
AAAATGTGCGGTGTCTGAGGCAGCGATCATTTTGAACTCGTGTGTGGAACCCAAAATGCAAGTC
ACTATCACCCTGACATCTCCAATTATTCGAGAAGAGAACATGAGGGAAGGAGATGTAACCTCGG
GTATGGTGAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCT
ACGCCACGCTAAGTGGTTCCAGGCTAGAGCTAATGGCCTACAGTCCTGTGTGATTATCATACGT
ATTCTCCGAGACCTTTGTCAGCGAGTTCCAACATGGTCTGATTTTCCTAGCTGGGCTATGGAGT
TACTGGTAGAGAAAGCAATTAGCAGTGCTTCTAGTCCTCAAAGCCCTGGAGATGCCCTGAGAAG
AGTATTTGAGTGCATTTCTTCAGGGATTATTCTCAAAGGCAGCCCTGGACTTCTGGATCCTTGT
GAAAAGGATCCCTTTGATACTTTGGCAACAATGACTGACCAACAGCGTGAAGACATTACATCCA
GTGCACAGTTTGCATTGAGACTCCTTGCATTCCGTCAGATACACAAAGTTCTGGGAATGGATCC
ATTACCACAAATGAATCAACGCTTTAATATCCACAACAACAGGAAACGAAGAAGGGATAGTGAT
GGAGTGGATGGATTTGAAGCTGAGGGGAAAAAAGACAAAAAGGATTATGATAACTTTTAAAAAG
TTTGTGTAAATCTTCAGTGTTACAATAGGTGCCAGTTATTGGCTGTTTTCCATTCATAATAATG
TCTACTTTAAAAGTTTATCAAGAATATAAAGAGTTTCATGGAAGAACCAAGTTTTTCTATGATA
TTAAAAACTTATTGTACAGTGTCAGGTATTATATGGATGGAAAGACGTTGGAAAATAAATTTGA
CTAGGGGAAGTATAGTGGTTCCCCTCCCTTTTTTCCCCCATTATTTTATTGACTGGTTGCCCTT
GCCCCCTGTATTTTTGTGTCTTTTATTAACTAGTGCATTGTGTTATTAAATCTTTACTGTATTT
AATGCAGGATTTGTGCTTCAGTTGCTCCGTGTATTTTGATACTTTTATTTAGAAGTTTTGTTTG
CTTTGACACCAGTTGTAAGTTACTGTGTTCCAGGTGATATCCTTTACCCCTTACTACTTTACAG
CAGTGCGTCTTTTTGTAACGTGAAACTGCAGACTTTCTTCCTTTGTTACTCTGTATGTGAAGGA
TTTCAATACAAAAAGCTACCCTGCCATCTAAGTGCTCAGAACTAGGTGTTTCTGCAGATCTTGT
GGCATTTGTCTATCTAGTGTGATATATAAAGGTGTAATTAAGACAAATTCGTTAATCTAATCAA
GTTTGCTGTTAGTTGTGCATTAGCAGTATAAAAGCTAATATATATTATATGGTCTTGCAACAGT
TTTAAAGCCTCTGCATAATTGATAATAAAATGCATGACATTTTTGTTTTTAATAGACATTTAAA
ATAATTTTAGGTTTAACACGTAGATCTTTGTACAGTTGACTTTTTGACATAGCAAGGCCAAAAA
TAACTTTCTGAATACTTTTTCTTCTGTACAAGTGGAAAGGGAATTTCTCACATATAAGTGGGCT
ATTGTTTTCAGAAGAACTTCATCATTGTGCAACTAACAATAACTAGCCCTAATTATGTGACAGT
TCCTTATTGATATGTGTGCAATTACTCTAGCAGCTTCTACAGTATAACACAGTTGAATGATCCC
CATACATCCTATCACTCAGATCATTTATAGGTCTATTAACTGTGAGATTGATAAAGTATTACTG
ATTTAAGAAAAATAAGAGTATCTAAGGAAAAAAAAAAAAACAGAAAATTATTTGGTGTGGCCAT
CCTCCATGCTTACGTCTTATACAGAGTGCTAACCCCTAGCAGTGGTGTAATGAGTTACAGCCTA
CTGCGATGTATGTGTGCTCTGGTGCACAGATGTCGTTTTGTTGTCACAGCACTACAGTGAGATA
CAGAAATAAAGACTTAAATTCATAGAA

hide sequence

RefSeq Acc Id:

XM_017590988 ⟹ XP_017446477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	62,864,677 - 62,927,144 (+)	NCBI
mRatBN7.2	2	61,137,616 - 61,200,102 (+)	NCBI
Rnor_6.0	2	62,150,256 - 62,212,815 (+)	NCBI

Sequence:

show sequence

AGGGAACTCCACACCCGCACCCCACAAATCTGCCCCTCAGGGGCACCCTGCGCCAGCCCCGGGG
TGGGGGTGGGGGTTGGCGTGGGGCGTGAGGACTACATCTCCCAGGATGCATCGCACTAGCGCGC
TTGCGCTGTGCGGCCGGCGGCGGCGGTCTGTTCTCCGCTGAGGAGGAGTGGGGCAGAGGAGGGA
GGCAGCGGGTGAGAGTTCAGAGTTCAGCAGCAGCAGCCCGAGCCCATGATTCCCATATGCCCTG
TAGTTTCTTTCACCTATGTGCCCAGCCGGCTGGGGGAAGATGCCAAAATGGCGACCGGCAACTA
CTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAGTATAGTTCTGTTCTC
TGGAGCAGCATGGACCAGCAGCCAGCTTCGGGTGTAGCCTATTCCCATCCAACTACTGTTGCTA
GCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCTTACGCACCAGCAGC
CGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTTGCTGTTGCAGCTGCTGCAACAGCTGCTGCT
TATGGAGGCTACCCCACTGCACACACAGCAACCGACTATGGTTACACCCAGAGGCAACAAGAAG
CACCACCACCACCACCCCCAGCTACTACACAGAACTACCAGGACTCATACTCGTATGTAAGATC
CACAGCCCCTGCTGTGGCTTATGATAGTAAGCAGTACTACCAACAGCCCACAGCAACTGCTGCT
GCAGTGGCTGCTGCTGCCCAGCCTCAGCCTTCGGTTGCTGAAACCTACTATCAGACAGCTCCTA
AAGCAGGTTATAGTCAAGGTGCAACACAGTATACTCAAGCCCAGCAAGCTCGACAAGTGACAGC
CATAAAACCAGCCACCCCAAGTCCAGCTACCACTACTTTCTCCATTTATCCTGTGTCCTCCACT
GTACAGCCAGTGGCAGCTGCGGCTACTGTGGTACCGTCCTATACTCAGAGTGCTACTTACAGTA
CCACAGCAGTTACTTACTCCGGTACATCTTATTCAGGTTATGAAGCAGCCGTATATTCAGCTGC
GTCTTCCTACTACCAACAGCAGCAGCAGCAACAGAAGCAAGCAGCAGCAGCAGCTGCTGCTGCA
GCAGCAACAGCTGCCTGGACAGGGACCACCTTTACTAAAAAAACACCATTCCAAAATAAACAAC
TGAAACCAAAACAGCCTCCCAAACCACCCCAGATTCATTATTGTGATGTTTGTAAGATCAGCTG
TGCTGGACCACAGACTTATAAAGAGCACTTAGAAGGACAGAAACATAAAAAAAAGGAAGCCGCA
TTGAAAGCCTCTCAAAATACCAGCAGCAGCAACAACTCAACTCGTGGGACACAAAATCAGCTAC
GTTGCGAGCTCTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCACATTCGTGGTGC
TAAGCATCAGAAAGTGGTTAAATTACACACAAAACTTGGTAAACCTATTCCTTCAACGGAACCA
AATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAACCAACTGCCTCTCCTT
CAAGTATTGGAGCAAGCAATTGTACTCTGAACACGTCATCAATTGCAACTACTTCAGTGAAAGG
TCTTTCAACTACAGGAAACTCGTCTCTTAATAGTACATCCAACACTAAAGTGTCAGCGGTACCT
ACCAATATGGCTGCCAAGAAAACATCTACACCCAAAATAAACTTTGTTGGTGGAAATAAGCTAC
AGTCAACAGGAAATAAAGCTGAAGACTTAAAAGGAACTGACTGCATTAAAAATAATCCTGCTGC
CTCTGCTGTACAGATTCCAGAAGTAAAGCAAGATGCAGTGTCAGAACCAGTCACACCTGCATCC
CTTGCTGCTTTGCAGAGTGATGTGCAACCAGTGGGACATGATTATGTTGAAGAGGTACGAAATG
ATGAAGGAAAAGTCATTCGCTTCCATTGTAAATTATGTGAATGCAGCTTTAATGACCCCAATGC
TAAAGAGATGCACCTAAAAGGACGAAGACATAGACTTCAGTATAAAAAAAAAGTAAATCCAGAT
TTGCAAGTGGAAGTGAAGCCCAGTATTCGTGCAAGAAAGATTCAAGAAGAGAAAATGAGAAAGC
AAATGCAGAAGGAAGAGTACTGGCGGAGACGAGAAGAAGAGGAGCGCTGGAGGATGGAAATAAG
ACGTTATGAAGAAGACATGTACTGGAGAAGAATGGAGGAAGAACAGCATCATTGGGATGATCGC
CGACGAATGCCTGATGGAGGCTATCCTCATGGGCCTCCAGGTCCATTAGGTCTTTTGGGAGTCC
GACCAGGCATGCCTCCCCAGCCACAGGGCCCTGCACCCTTACGTCGCCCTGACTCATCTGATGA
TCGTTATGTAATGACAAAGCATGCAACTATTTATCCAACGGAAGAAGAGTTACAAGCAGTTCAG
AAAATTGTTTCTATCACTGAACGTGCTTTAAAGCTTGTTTCAGACAGTTTGTCTGAACATGAGA
AGAGCAAGAATAAAGAGGGAGATGATAAGAAAGAGGGAGGTAAAGACAGAGCTCTGAAAGGGGT
GTTGCGAGTAGGAGTATTGGCAAAAGGATTGCTTCTCCGAGGAGACAGAAATGTCAACCTTGTT
TTGCTGTGTTCAGAAAAACCTTCCAAGTCATTATTAAGCCGTATTGCAGAAAACCTACCCAAAC
AGCTTGCTGTTATAAGTCCTGAGAAGTATGACATAAAATGTGCGGTGTCTGAGGCAGCGATCAT
TTTGAACTCGTGTGTGGAACCCAAAATGCAAGTCACTATCACCCTGACATCTCCAATTATTCGA
GAAGAGAACATGAGGGAAGGAGATGTAACCTCGGGTATGGTGAAAGACCCACCGGACGTCTTGG
ACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAGGCTAGAGC
TAATGGCCTACAGTCCTGTGTGATTATCATACGTATTCTCCGAGACCTTTGTCAGCGAGTTCCA
ACATGGTCTGATTTTCCTAGCTGGGCTATGGAGTTACTGGTAGAGAAAGCAATTAGCAGTGCTT
CTAGTCCTCAAAGCCCTGGAGATGCCCTGAGAAGAGTATTTGAGTGCATTTCTTCAGGGATTAT
TCTCAAAGGCAGCCCTGGACTTCTGGATCCTTGTGAAAAGGATCCCTTTGATACTTTGGCAACA
ATGACTGACCAACAGCGTGAAGACATTACATCCAGTGCACAGTTTGCATTGAGACTCCTTGCAT
TCCGTCAGATACACAAAGTTCTGGGAATGGATCCATTACCACAAATGAATCAACGCTTTAATAT
CCACAACAACAGGAAACGAAGAAGGGATAGTGATGGAGTGGATGGATTTGAAGCTGAGGGGAAA
AAAGACAAAAAGGATTATGATAACTTTTAAAAAGTTTGTGTAAATCTTCAGTGTTACAATAGGT
GCCAGTTATTGGCTGTTTTCCATTCATAATAATGTCTACTTTAAAAGTTTATCAAGAATATAAA
GAGTTTCATGGAAGAACCAAGTTTTTCTATGATATTAAAAACTTATTGTACAGTGTCAGGTATT
ATATGGATGGAAAGACGTTGGAAAATAAATTTGACTAGGGGAAGTATAGTGGTTCCCCTCCCTT
TTTTCCCCCATTATTTTATTGACTGGTTGCCCTTGCCCCCTGTATTTTTGTGTCTTTTATTAAC
TAGTGCATTGTGTTATTAAATCTTTACTGTATTTAATGCAGGATTTGTGCTTCAGTTGCTCCGT
GTATTTTGATACTTTTATTTAGAAGTTTTGTTTGCTTTGACACCAGTTGTAAGTTACTGTGTTC
CAGGTGATATCCTTTACCCCTTACTACTTTACAGCAGTGCGTCTTTTTGTAACGTGAAACTGCA
GACTTTCTTCCTTTGTTACTCTGTATGTGAAGGATTTCAATACAAAAAGCTACCCTGCCATCTA
AGTGCTCAGAACTAGGTGTTTCTGCAGATCTTGTGGCATTTGTCTATCTAGTGTGATATATAAA
GGTGTAATTAAGACAAATTCGTTAATCTAATCAAGTTTGCTGTTAGTTGTGCATTAGCAGTATA
AAAGCTAATATATATTATATGGTCTTGCAACAGTTTTAAAGCCTCTGCATAATTGATAATAAAA
TGCATGACATTTTTGTTTTTAATAGACATTTAAAATAATTTTAGGTTTAACACGTAGATCTTTG
TACAGTTGACTTTTTGACATAGCAAGGCCAAAAATAACTTTCTGAATACTTTTTCTTCTGTACA
AGTGGAAAGGGAATTTCTCACATATAAGTGGGCTATTGTTTTCAGAAGAACTTCATCATTGTGC
AACTAACAATAACTAGCCCTAATTATGTGACAGTTCCTTATTGATATGTGTGCAATTACTCTAG
CAGCTTCTACAGTATAACACAGTTGAATGATCCCCATACATCCTATCACTCAGATCATTTATAG
GTCTATTAACTGTGAGATTGATAAAGTATTACTGATTTAAGAAAAATAAGAGTATCTAAGGAAA
AAAAAAAAAACAGAAAATTATTTGGTGTGGCCATCCTCCATGCTTACGTCTTATACAGAGTGCT
AACCCCTAGCAGTGGTGTAATGAGTTACAGCCTACTGCGATGTATGTGTGCTCTGGTGCACAGA
TGTCGTTTTGTTGTCACAGCACTACAGTGAGATACAGAAATAAAGACTTAAATTCATAGAA

hide sequence

RefSeq Acc Id:

XM_017590989 ⟹ XP_017446478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	62,864,677 - 62,927,144 (+)	NCBI
mRatBN7.2	2	61,137,616 - 61,200,102 (+)	NCBI
Rnor_6.0	2	62,150,256 - 62,212,815 (+)	NCBI

Sequence:

show sequence

AGGGAACTCCACACCCGCACCCCACAAATCTGCCCCTCAGGGGCACCCTGCGCCAGCCCCGGGG
TGGGGGTGGGGGTTGGCGTGGGGCGTGAGGACTACATCTCCCAGGATGCATCGCACTAGCGCGC
TTGCGCTGTGCGGCCGGCGGCGGCGGTCTGTTCTCCGCTGAGGAGGAGTGGGGCAGAGGAGGGA
GGCAGCGGGTGAGAGTTCAGAGTTCAGCAGCAGCAGCCCGAGCCCATGATTCCCATATGCCCTG
TAGTTTCTTTCACCTATGTGCCCAGCCGGCTGGGGGAAGATGCCAAAATGGCGACCGGCAACTA
CTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAGTATAGTTCTGTTCTC
TGGAGCAGCATGGACCAGCAGCCAGCTTCGGGTGTAGCCTATTCCCATCCAACTACTGTTGCTA
GCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCTTACGCACCAGCAGC
CGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTTGCTGTTGCAGCTGCTGCAACAGCTGCTGCT
TATGGAGGCTACCCCACTGCACACACAGCAACCGACTATGGTTACACCCAGAGGCAACAAGAAG
CACCACCACCACCACCCCCAGCTACTACACAGAACTACCAGGACTCATACTCGTATGTAAGATC
CACAGCCCCTGCTGTGGCTTATGATAGTAAGCAGTACTACCAACAGCCCACAGCAACTGCTGCT
GCAGTGGCTGCTGCTGCCCAGCCTCAGCCTTCGGTTGCTGAAACCTACTATCAGACAGCTCCTA
AAGCAGGTTATAGTCAAGGTGCAACACAGTATACTCAAGCCCAGCAAGCTCGACAAGTGACAGC
CATAAAACCAGCCACCCCAAGTCCAGCTACCACTACTTTCTCCATTTATCCTGTGTCCTCCACT
GTACAGCCAGTGGCAGCTGCGGCTACTGTGGTACCGTCCTATACTCAGAGTGCTACTTACAGTA
CCACAGCAGTTACTTACTCCGGTACATCTTATTCAGGTTATGAAGCAGCCGTATATTCAGCTGC
GTCTTCCTACTACCAACAGCAGCAGCAGCAACAGAAGCAAGCAGCAGCAGCAGCTGCTGCTGCA
GCAGCAACAGCTGCCTGGACAGGGACCACCTTTACTAAAAAAACACCATTCCAAAATAAACAAC
TGAAACCAAAACAGCCTCCCAAACCACCCCAGATTCATTATTGTGATGTTTGTAAGATCAGCTG
TGCTGGACCACAGGTGGTTAAATTACACACAAAACTTGGTAAACCTATTCCTTCAACGGAACCA
AATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAACCAACTGCCTCTCCTT
CAAGTATTGGAGCAAGCAATTGTACTCTGAACACGTCATCAATTGCAACTACTTCAGTGAAAGG
TCTTTCAACTACAGGAAACTCGTCTCTTAATAGTACATCCAACACTAAAGTGTCAGCGGTACCT
ACCAATATGGCTGCCAAGAAAACATCTACACCCAAAATAAACTTTGTTGGTGGAAATAAGCTAC
AGTCAACAGGAAATAAAGCTGAAGACTTAAAAGGAACTGACTGCATTAAAAATAATCCTGCTGC
CTCTGCTGTACAGATTCCAGAAGTAAAGCAAGATGCAGTGTCAGAACCAGTCACACCTGCATCC
CTTGCTGCTTTGCAGAGTGATGTGCAACCAGTGGGACATGATTATGTTGAAGAGGTACGAAATG
ATGAAGGAAAAGTCATTCGCTTCCATTGTAAATTATGTGAATGCAGCTTTAATGACCCCAATGC
TAAAGAGATGCACCTAAAAGGACGAAGACATAGACTTCAGTATAAAAAAAAAGTAAATCCAGAT
TTGCAAGTGGAAGTGAAGCCCAGTATTCGTGCAAGAAAGATTCAAGAAGAGAAAATGAGAAAGC
AAATGCAGAAGGAAGAGTACTGGCGGAGACGAGAAGAAGAGGAGCGCTGGAGGATGGAAATAAG
ACGTTATGAAGAAGACATGTACTGGAGAAGAATGGAGGAAGAACAGCATCATTGGGATGATCGC
CGACGAATGCCTGATGGAGGCTATCCTCATGGGCCTCCAGGTCCATTAGGTCTTTTGGGAGTCC
GACCAGGCATGCCTCCCCAGCCACAGGGCCCTGCACCCTTACGTCGCCCTGACTCATCTGATGA
TCGTTATGTAATGACAAAGCATGCAACTATTTATCCAACGGAAGAAGAGTTACAAGCAGTTCAG
AAAATTGTTTCTATCACTGAACGTGCTTTAAAGCTTGTTTCAGACAGTTTGTCTGAACATGAGA
AGAGCAAGAATAAAGAGGGAGATGATAAGAAAGAGGGAGGTAAAGACAGAGCTCTGAAAGGGGT
GTTGCGAGTAGGAGTATTGGCAAAAGGATTGCTTCTCCGAGGAGACAGAAATGTCAACCTTGTT
TTGCTGTGTTCAGAAAAACCTTCCAAGTCATTATTAAGCCGTATTGCAGAAAACCTACCCAAAC
AGCTTGCTGTTATAAGTCCTGAGAAGTATGACATAAAATGTGCGGTGTCTGAGGCAGCGATCAT
TTTGAACTCGTGTGTGGAACCCAAAATGCAAGTCACTATCACCCTGACATCTCCAATTATTCGA
GAAGAGAACATGAGGGAAGGAGATGTAACCTCGGGTATGGTGAAAGACCCACCGGACGTCTTGG
ACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAGGCTAGAGC
TAATGGCCTACAGTCCTGTGTGATTATCATACGTATTCTCCGAGACCTTTGTCAGCGAGTTCCA
ACATGGTCTGATTTTCCTAGCTGGGCTATGGAGTTACTGGTAGAGAAAGCAATTAGCAGTGCTT
CTAGTCCTCAAAGCCCTGGAGATGCCCTGAGAAGAGTATTTGAGTGCATTTCTTCAGGGATTAT
TCTCAAAGGCAGCCCTGGACTTCTGGATCCTTGTGAAAAGGATCCCTTTGATACTTTGGCAACA
ATGACTGACCAACAGCGTGAAGACATTACATCCAGTGCACAGTTTGCATTGAGACTCCTTGCAT
TCCGTCAGATACACAAAGTTCTGGGAATGGATCCATTACCACAAATGAATCAACGCTTTAATAT
CCACAACAACAGGAAACGAAGAAGGGATAGTGATGGAGTGGATGGATTTGAAGCTGAGGGGAAA
AAAGACAAAAAGGATTATGATAACTTTTAAAAAGTTTGTGTAAATCTTCAGTGTTACAATAGGT
GCCAGTTATTGGCTGTTTTCCATTCATAATAATGTCTACTTTAAAAGTTTATCAAGAATATAAA
GAGTTTCATGGAAGAACCAAGTTTTTCTATGATATTAAAAACTTATTGTACAGTGTCAGGTATT
ATATGGATGGAAAGACGTTGGAAAATAAATTTGACTAGGGGAAGTATAGTGGTTCCCCTCCCTT
TTTTCCCCCATTATTTTATTGACTGGTTGCCCTTGCCCCCTGTATTTTTGTGTCTTTTATTAAC
TAGTGCATTGTGTTATTAAATCTTTACTGTATTTAATGCAGGATTTGTGCTTCAGTTGCTCCGT
GTATTTTGATACTTTTATTTAGAAGTTTTGTTTGCTTTGACACCAGTTGTAAGTTACTGTGTTC
CAGGTGATATCCTTTACCCCTTACTACTTTACAGCAGTGCGTCTTTTTGTAACGTGAAACTGCA
GACTTTCTTCCTTTGTTACTCTGTATGTGAAGGATTTCAATACAAAAAGCTACCCTGCCATCTA
AGTGCTCAGAACTAGGTGTTTCTGCAGATCTTGTGGCATTTGTCTATCTAGTGTGATATATAAA
GGTGTAATTAAGACAAATTCGTTAATCTAATCAAGTTTGCTGTTAGTTGTGCATTAGCAGTATA
AAAGCTAATATATATTATATGGTCTTGCAACAGTTTTAAAGCCTCTGCATAATTGATAATAAAA
TGCATGACATTTTTGTTTTTAATAGACATTTAAAATAATTTTAGGTTTAACACGTAGATCTTTG
TACAGTTGACTTTTTGACATAGCAAGGCCAAAAATAACTTTCTGAATACTTTTTCTTCTGTACA
AGTGGAAAGGGAATTTCTCACATATAAGTGGGCTATTGTTTTCAGAAGAACTTCATCATTGTGC
AACTAACAATAACTAGCCCTAATTATGTGACAGTTCCTTATTGATATGTGTGCAATTACTCTAG
CAGCTTCTACAGTATAACACAGTTGAATGATCCCCATACATCCTATCACTCAGATCATTTATAG
GTCTATTAACTGTGAGATTGATAAAGTATTACTGATTTAAGAAAAATAAGAGTATCTAAGGAAA
AAAAAAAAAACAGAAAATTATTTGGTGTGGCCATCCTCCATGCTTACGTCTTATACAGAGTGCT
AACCCCTAGCAGTGGTGTAATGAGTTACAGCCTACTGCGATGTATGTGTGCTCTGGTGCACAGA
TGTCGTTTTGTTGTCACAGCACTACAGTGAGATACAGAAATAAAGACTTAAATTCATAGAA

hide sequence

RefSeq Acc Id:

XM_039102742 ⟹ XP_038958670

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	62,864,612 - 62,927,144 (+)	NCBI
mRatBN7.2	2	61,137,616 - 61,200,102 (+)	NCBI

RefSeq Acc Id:

XM_063282250 ⟹ XP_063138320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	62,864,333 - 62,927,144 (+)	NCBI

RefSeq Acc Id:

XM_063282251 ⟹ XP_063138321

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	62,864,798 - 62,927,144 (+)	NCBI

RefSeq Acc Id:

XR_010063629

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	62,864,677 - 62,922,618 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001257901	(Get FASTA)	NCBI Sequence Viewer
	XP_006232116	(Get FASTA)	NCBI Sequence Viewer
	XP_017446477	(Get FASTA)	NCBI Sequence Viewer
	XP_017446478	(Get FASTA)	NCBI Sequence Viewer
	XP_038958670	(Get FASTA)	NCBI Sequence Viewer
	XP_063138320	(Get FASTA)	NCBI Sequence Viewer
	XP_063138321	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92648	(Get FASTA)	NCBI Sequence Viewer
	AAI61952	(Get FASTA)	NCBI Sequence Viewer
	EDL82963	(Get FASTA)	NCBI Sequence Viewer
	EDL82964	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016196
	ENSRNOP00000073762
	ENSRNOP00000075053
	ENSRNOP00000108457
	ENSRNOP00000110029
GenBank Protein	Q562A2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001257901 ⟸ NM_001270972

- UniProtKB:

Q562A2 (UniProtKB/Swiss-Prot), A0A0H2UHJ5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHSGAAAAAAAAQYSQQPASGVAYSHPTTVASY
TVHQAPVAAHTVTAAYAPAAATVAVARPAPVAVAAAATAAAYGGYPTAHTATDYGYTQRQQEAP
PPPPPATTQNYQDSYSYVRSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQPSVAETYYQTAPKA
GYSQGATQYTQAQQARQVTAIKPATPSPATTTFSIYPVSSTVQPVAAAATVVPSYTQSATYSTT
AVTYSGTSYSGYEAAVYSAASSYYQQQQQQQKQAAAAAAAAAATAAWTGTTFTKKTPFQNKQLK
PKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRC
ELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASKPTASPSS
IGASNCTLNTSSIATTSVKGLSTTGNSSLNSTSNTKVSAVPTNMAAKKTSTPKINFVGGNKLQS
TGNKAEDLKGTDCIKNNPAASAVQIPEVKQDAVSEPVTPASLAALQSDVQPVGHDYVEEVRNDE
GKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARKIQEEKMRKQM
QKEEYWRRREEEERWRMEIRRYEEDMYWRRMEEEQHHWDDRRRMPDGGYPHGPPGPLGLLGVRP
GMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKS
KNKEGDDKKEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRIAENLPKQL
AVISPEKYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDR
QKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASS
PQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFR
QIHKVLGMDPLPQMNQRFNIHNNRKRRRDSDGVDGFEAEGKKDKKDYDNF

hide sequence

RefSeq Acc Id:	XP_006232116 ⟸ XM_006232054
- Peptide Label:	isoform X3
- UniProtKB:	Q562A2 (UniProtKB/Swiss-Prot), A0A0G2K6C9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPCSFFHLCQQPASGVAYSHPTTVASYTVHQAPVAAHTVTAAYAPAAATVAVARPAPVAVAAAA TAAAYGGYPTAHTATDYGYTQRQQEAPPPPPPATTQNYQDSYSYVRSTAPAVAYDSKQYYQQPT ATAAAVAAAAQPQPSVAETYYQTAPKAGYSQGATQYTQAQQARQVTAIKPATPSPATTTFSIYP VSSTVQPVAAAATVVPSYTQSATYSTTAVTYSGTSYSGYEAAVYSAASSYYQQQQQQQKQAAAA AAAAAATAAWTGTTFTKKTPFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKK KEAALKASQNTSSSNNSTRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIP STEPNVVSQATSSTAVSASKPTASPSSIGASNCTLNTSSIATTSVKGLSTTGNSSLNSTSNTKV SAVPTNMAAKKTSTPKINFVGGNKLQSTGNKAEDLKGTDCIKNNPAASAVQIPEVKQDAVSEPV TPASLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKK VNPDLQVEVKPSIRARKIQEEKMRKQMQKEEYWRRREEEERWRMEIRRYEEDMYWRRMEEEQHH WDDRRRMPDGGYPHGPPGPLGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEEL QAVQKIVSITERALKLVSDSLSEHEKSKNKEGDDKKEGGKDRALKGVLRVGVLAKGLLLRGDRN VNLVLLCSEKPSKSLLSRIAENLPKQLAVISPEKYDIKCAVSEAAIILNSCVEPKMQVTITLTS PIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLC QRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFD TLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPLPQMNQRFNIHNNRKRRRDSDGVDGFE AEGKKDKKDYDNF hide sequence

RefSeq Acc Id:	XP_017446477 ⟸ XM_017590988
- Peptide Label:	isoform X1
- UniProtKB:	Q562A2 (UniProtKB/Swiss-Prot), A0A8L2RAI7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHSGAAAAAAAAQYSSVLWSSMDQQPASGVAYS HPTTVASYTVHQAPVAAHTVTAAYAPAAATVAVARPAPVAVAAAATAAAYGGYPTAHTATDYGY TQRQQEAPPPPPPATTQNYQDSYSYVRSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQPSVAET YYQTAPKAGYSQGATQYTQAQQARQVTAIKPATPSPATTTFSIYPVSSTVQPVAAAATVVPSYT QSATYSTTAVTYSGTSYSGYEAAVYSAASSYYQQQQQQQKQAAAAAAAAAATAAWTGTTFTKKT PFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTR GTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSAS KPTASPSSIGASNCTLNTSSIATTSVKGLSTTGNSSLNSTSNTKVSAVPTNMAAKKTSTPKINF VGGNKLQSTGNKAEDLKGTDCIKNNPAASAVQIPEVKQDAVSEPVTPASLAALQSDVQPVGHDY VEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARKIQ EEKMRKQMQKEEYWRRREEEERWRMEIRRYEEDMYWRRMEEEQHHWDDRRRMPDGGYPHGPPGP LGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSD SLSEHEKSKNKEGDDKKEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRI AENLPKQLAVISPEKYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVK DPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVE KAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQF ALRLLAFRQIHKVLGMDPLPQMNQRFNIHNNRKRRRDSDGVDGFEAEGKKDKKDYDNF hide sequence

RefSeq Acc Id:	XP_017446478 ⟸ XM_017590989
- Peptide Label:	isoform X4
- UniProtKB:	Q562A2 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHSGAAAAAAAAQYSSVLWSSMDQQPASGVAYS HPTTVASYTVHQAPVAAHTVTAAYAPAAATVAVARPAPVAVAAAATAAAYGGYPTAHTATDYGY TQRQQEAPPPPPPATTQNYQDSYSYVRSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQPSVAET YYQTAPKAGYSQGATQYTQAQQARQVTAIKPATPSPATTTFSIYPVSSTVQPVAAAATVVPSYT QSATYSTTAVTYSGTSYSGYEAAVYSAASSYYQQQQQQQKQAAAAAAAAAATAAWTGTTFTKKT PFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQVVKLHTKLGKPIPSTEPNVVSQATSSTAVSAS KPTASPSSIGASNCTLNTSSIATTSVKGLSTTGNSSLNSTSNTKVSAVPTNMAAKKTSTPKINF VGGNKLQSTGNKAEDLKGTDCIKNNPAASAVQIPEVKQDAVSEPVTPASLAALQSDVQPVGHDY VEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARKIQ EEKMRKQMQKEEYWRRREEEERWRMEIRRYEEDMYWRRMEEEQHHWDDRRRMPDGGYPHGPPGP LGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSD SLSEHEKSKNKEGDDKKEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRI AENLPKQLAVISPEKYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVK DPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVE KAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQF ALRLLAFRQIHKVLGMDPLPQMNQRFNIHNNRKRRRDSDGVDGFEAEGKKDKKDYDNF hide sequence

Ensembl Acc Id:

ENSRNOP00000075053 ⟸ ENSRNOT00000080241

Ensembl Acc Id:

ENSRNOP00000016196 ⟸ ENSRNOT00000016196

Ensembl Acc Id:

ENSRNOP00000073762 ⟸ ENSRNOT00000087636

RefSeq Acc Id:	XP_038958670 ⟸ XM_039102742
- Peptide Label:	isoform X5
- UniProtKB:	Q562A2 (UniProtKB/Swiss-Prot), A6KJQ3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138320 ⟸ XM_063282250
- Peptide Label:	isoform X2
- UniProtKB:	Q562A2 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063138321 ⟸ XM_063282251
- Peptide Label:	isoform X6
- UniProtKB:	Q562A2 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000110029 ⟸ ENSRNOT00000167486

Ensembl Acc Id:

ENSRNOP00000108457 ⟸ ENSRNOT00000130981

Protein Domains

DZF

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q562A2-F1-model_v2	AlphaFold	Q562A2	1-1073	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691198

Promoter ID:

EPDNEW_R1718

Type:

initiation region

Name:

Zfr_1

Description:

zinc finger RNA binding protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	62,150,411 - 62,150,471	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311890	AgrOrtholog
BioCyc Gene	G2FUF-54047	BioCyc
Ensembl Genes	ENSRNOG00000011627	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000016196	ENTREZGENE
	ENSRNOT00000080241	ENTREZGENE
	ENSRNOT00000087636	ENTREZGENE
	ENSRNOT00000130981	ENTREZGENE
	ENSRNOT00000167486	ENTREZGENE
Gene3D-CATH	1.10.1410.40	UniProtKB/Swiss-Prot
	3.30.460.10	UniProtKB/Swiss-Prot
	Classic Zinc Finger	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7319274	IMAGE-MGC_LOAD
	IMAGE:9026284	IMAGE-MGC_LOAD
InterPro	DZF_dom	UniProtKB/Swiss-Prot
	DZF_dom_C	UniProtKB/Swiss-Prot
	DZF_dom_N	UniProtKB/Swiss-Prot
	Matrin/U1-like-C_Znf_C2H2	UniProtKB/Swiss-Prot
	NT_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_type	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109426	IMAGE-MGC_LOAD
	MGC:187747	IMAGE-MGC_LOAD
NCBI Gene	365703	ENTREZGENE
PANTHER	ZINC FINGER RNA-BINDING PROTEIN	UniProtKB/Swiss-Prot
	ZINC FINGER RNA-BINDING PROTEIN	UniProtKB/Swiss-Prot
Pfam	DZF	UniProtKB/Swiss-Prot
	DZF_C	UniProtKB/Swiss-Prot
	zf-met	UniProtKB/Swiss-Prot
PhenoGen	Zfr	PhenoGen
PROSITE	DZF	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000011627	RatGTEx
SMART	DZF	UniProtKB/Swiss-Prot
	ZnF_C2H2	UniProtKB/Swiss-Prot
	ZnF_U1	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF57667	UniProtKB/Swiss-Prot
UniProt	A0A0G2K6C9	ENTREZGENE, UniProtKB/TrEMBL
	A0A0H2UHJ5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2RAI7	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LT80_RAT	UniProtKB/TrEMBL
	A0ABK0LZK0_RAT	UniProtKB/TrEMBL
	A6KJQ3	ENTREZGENE, UniProtKB/TrEMBL
	B1WC00_RAT	UniProtKB/TrEMBL
	Q562A2	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Zfr	zinc finger RNA binding protein	Zfr_predicted	zinc finger RNA binding protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Zfr_predicted	zinc finger RNA binding protein (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD