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Gene: Alms1 (ALMS1, centrosome and basal body associated protein) Rattus norvegicus

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Symbol:

Alms1

Name:

ALMS1, centrosome and basal body associated protein

RGD ID:

1311590

Description:

Predicted to enable alpha-actinin binding activity. Involved in positive regulation of endocytosis. Located in centriole and ciliary basal body. Human ortholog(s) of this gene implicated in Alstrom syndrome. Orthologous to human ALMS1 (ALMS1 centrosome and basal body associated protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Alstrom syndrome 1 homolog; Alstrom syndrome protein 1; centrosome-associated protein ALMS1; LOC297408

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

Alms1^em1Mcwi

Genetic Models:

SS-Alms1^em1Mcwi-/- ; SS-Alms1^em1Mcwi

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	119,683,085 - 119,783,471 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	119,683,076 - 119,783,471 (+)	Ensembl				GRCr8
mRatBN7.2	4	118,125,581 - 118,226,005 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	118,125,607 - 118,226,005 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	123,606,944 - 123,707,620 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	119,382,049 - 119,482,408 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	117,995,664 - 118,095,939 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	117,371,544 - 117,472,310 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	117,371,659 - 117,472,198 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	181,947,469 - 182,048,235 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	119,846,037 - 119,946,085 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	107,106,971 - 107,206,695 (+)	NCBI		Celera
RGSC_v3.1	4	120,087,754 - 120,190,647 (+)	NCBI
Cytogenetic Map	4	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alstrom syndrome (ISO,ISS)

Bardet-Biedl syndrome (ISO)

cone-rod dystrophy (ISO)

Desbuquois dysplasia (ISO)

diabetes mellitus (ISO)

dilated cardiomyopathy (ISO)

distal myopathy with rimmed vacuoles (ISO)

Down syndrome (ISO)

end stage renal disease (ISO)

Eye Abnormalities (ISO)

fundus dystrophy (ISO)

GNE myopathy (ISO)

Hearing Loss (ISO)

intellectual disability (ISO)

Leber congenital amaurosis (ISO)

leukodystrophy (ISO)

nephrotic syndrome (ISO)

obesity (ISS)

occult macular dystrophy (ISO)

optic atrophy (ISO)

Retinal Dystrophy, Early Onset Severe (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 1 (ISO)

Stickler syndrome (ISO)

type 2 diabetes mellitus (ISO)

Vision Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-amino-4,6-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (EXP)

caffeine (EXP,ISO)

calcitriol (ISO)

camptothecin (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

clobetasol (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

Dibutyl phosphate (ISO)

diethylstilbestrol (EXP)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

ketamine (EXP)

lead diacetate (ISO)

levonorgestrel (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methylmercury chloride (ISO)

N-ethyl-N-nitrosourea (ISO)

okadaic acid (ISO)

ozone (ISO)

phenobarbital (ISO)

quercetin (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamibarotene (ISO)

testosterone undecanoate (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (EXP,ISO)

vincristine (ISO)

zinc protoporphyrin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Cellular Component

centriole (IBA,IDA,ISO)

centrosome (IBA,IEA,ISO)

ciliary basal body (IDA,ISO)

cytosol (IBA,ISO)

microtubule cytoskeleton (ISO)

Molecular Function

alpha-actinin binding (ISO)

protein binding (IDA,ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased body weight (IMP)

increased mean systemic arterial blood pressure (IMP)

increased systemic arterial systolic blood pressure (IMP)

increased urine flow rate (IMP)

increased urine sodium level (IMP)

salt-sensitive hypertension (IMP)

References

References - curated

#	Reference Title	Reference Citation
1.	Fat aussie--a new Alstrom syndrome mouse showing a critical role for ALMS1 in obesity, diabetes, and spermatogenesis.	Arsov T, etal., Mol Endocrinol. 2006 Jul;20(7):1610-22. Epub 2006 Mar 2.
2.	Alms1-disrupted mice recapitulate human Alstrom syndrome.	Collin GB, etal., Hum Mol Genet. 2005 Aug 15;14(16):2323-33. Epub 2005 Jul 6.
3.	Mutations in ALMS1 cause obesity, type 2 diabetes and neurosensory degeneration in Alstrom syndrome.	Collin GB, etal., Nat Genet. 2002 May;31(1):74-8. Epub 2002 Apr 8.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
6.	Subcellular localization of ALMS1 supports involvement of centrosome and basal body dysfunction in the pathogenesis of obesity, insulin resistance, and type 2 diabetes.	Hearn T, etal., Diabetes. 2005 May;54(5):1581-7.
7.	Alstrom Syndrome protein ALMS1 localizes to basal bodies of cochlear hair cells and regulates cilium-dependent planar cell polarity.	Jagger D, etal., Hum Mol Genet. 2011 Feb 1;20(3):466-81. doi: 10.1093/hmg/ddq493. Epub 2010 Nov 11.
8.	Role of Alström syndrome 1 in the regulation of blood pressure and renal function.	Jaykumar AB, etal., JCI Insight. 2018 Nov 2;3(21). pii: 95076. doi: 10.1172/jci.insight.95076.
9.	Novel ALMS1 mutations in Chinese patients with Alstrom syndrome.	Liang X, etal., Mol Vis. 2013 Sep 7;19:1885-91. eCollection 2013.
10.	Syndromic obesity and diabetes: changes in body composition with age and mutation analysis of ALMS1 in 12 United Kingdom kindreds with Alstrom syndrome.	Minton JA, etal., J Clin Endocrinol Metab. 2006 Aug;91(8):3110-6. Epub 2006 May 23.
11.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
12.	Common variations in the ALMS1 gene do not contribute to susceptibility to type 2 diabetes in a large white UK population.	Patel S, etal., Diabetologia. 2006 Jun;49(6):1209-13. Epub 2006 Apr 7.
13.	Molecular approach in the study of Alstrom syndrome: analysis of ten Spanish families.	Pineiro-Gallego T, etal., Mol Vis. 2012;18:1794-802. Epub 2012 Jul 3.
14.	Defective adaptive thermogenesis contributes to metabolic syndrome and liver steatosis in obese mice.	Poekes L, etal., Clin Sci (Lond). 2017 Feb 1;131(4):285-296. doi: 10.1042/CS20160469. Epub 2016 Nov 1.
15.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
17.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:17206865	PMID:20844083	PMID:21399614	PMID:22693585

Genomics

Comparative Map Data

Alms1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	119,683,085 - 119,783,471 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	119,683,076 - 119,783,471 (+)	Ensembl				GRCr8
mRatBN7.2	4	118,125,581 - 118,226,005 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	118,125,607 - 118,226,005 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	123,606,944 - 123,707,620 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	119,382,049 - 119,482,408 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	117,995,664 - 118,095,939 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	117,371,544 - 117,472,310 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	117,371,659 - 117,472,198 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	181,947,469 - 182,048,235 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	119,846,037 - 119,946,085 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	107,106,971 - 107,206,695 (+)	NCBI		Celera
RGSC_v3.1	4	120,087,754 - 120,190,647 (+)	NCBI
Cytogenetic Map	4	q34	NCBI

ALMS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	73,385,758 - 73,609,919 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	73,385,758 - 73,625,166 (+)	Ensembl			hg38	GRCh38
GRCh37	2	73,612,886 - 73,837,046 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	73,466,394 - 73,690,554 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	73,524,540 - 73,748,701	NCBI
Celera	2	73,463,729 - 73,687,908 (+)	NCBI		Celera
Cytogenetic Map	2	p13.1	NCBI
HuRef	2	73,348,377 - 73,572,081 (+)	NCBI		HuRef
CHM1_1	2	73,543,709 - 73,767,862 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	73,398,811 - 73,623,015 (+)	NCBI		T2T-CHM13v2.0

Alms1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	85,564,482 - 85,698,973 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	85,564,513 - 85,679,735 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	85,587,498 - 85,726,611 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	85,587,531 - 85,702,753 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	85,537,525 - 85,652,745 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	85,553,189 - 85,668,300 (+)	NCBI		MGSCv36	mm8
Celera	6	87,559,405 - 87,708,447 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	37.48	NCBI

Alms1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	12,130,607 - 12,258,522 (-)	Ensembl
ChiLan1.0	NW_004955424	12,130,496 - 12,258,684 (-)	NCBI	ChiLan1.0	ChiLan1.0

ALMS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	52,762,287 - 52,994,559 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	52,765,040 - 52,997,312 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	73,438,657 - 73,671,313 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	74,926,650 - 75,158,734 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	74,926,650 - 75,152,139 (+)	Ensembl			panPan2	panpan1.1

ALMS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	49,301,397 - 49,513,729 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	49,301,606 - 49,513,625 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	48,945,100 - 49,160,487 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	50,163,595 - 50,379,703 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	50,163,595 - 50,336,732 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	49,179,726 - 49,395,827 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	49,247,116 - 49,462,601 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	49,806,151 - 50,021,717 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Alms1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	11,228,877 - 11,418,533 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936491	17,152,759 - 17,342,648 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ALMS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	69,253,750 - 69,417,189 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	69,253,742 - 69,417,043 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	72,455,187 - 72,619,961 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ALMS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	33,571,894 - 33,795,404 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	33,573,296 - 33,789,549 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	78,295,878 - 78,526,188 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Alms1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624762	128,491 - 269,006 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624762	129,349 - 268,945 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Alms1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	60,507,141 - 60,608,606 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Alms1
561 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	136
Count of miRNA genes:	113
Interacting mature miRNAs:	124
Transcripts:	ENSRNOT00000045735
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	86583980	149763391	Rat
631689	Scl4	Serum cholesterol level QTL 4	1.9	0.008	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	96731383	141731383	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	107346299	152346299	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	92406430	137406430	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	117737142	152833657	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
2306545	Iddm39	Insulin dependent diabetes mellitus QTL 39			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78687630	123687630	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	111383604	156383604	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	108206096	153206096	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	74169813	134199155	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	86058928	131411333	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	75939858	140508796	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	111383604	156383604	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	75939858	140508796	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	65060960	127749483	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	84349032	129349032	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	82336765	127336765	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
2293840	Kiddil9	Kidney dilation QTL 9	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	4	113634167	149763391	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	88883695	133883695	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	86583980	131583980	Rat
70201	Gcr1	Gastric cancer resistance QTL 1	2.7		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	4	103834277	148834277	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	88883695	133883695	Rat

Markers in Region

RH136742

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	118,219,748 - 118,219,872 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	117,466,058 - 117,466,181	NCBI	Rnor6.0
Rnor_5.0	4	182,041,983 - 182,042,106	UniSTS	Rnor5.0
RGSC_v3.4	4	119,940,698 - 119,940,821	UniSTS	RGSC3.4
Celera	4	107,200,443 - 107,200,566	UniSTS
Cytogenetic Map	4	q34	UniSTS

Genetic Models

This gene Alms1 is modified in the following models/strains:

SS-Alms1^em1Mcwi-/- SS-Alms1^em1Mcwi

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000045735 ⟹ ENSRNOP00000050674

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	119,683,085 - 119,783,471 (+)	Ensembl
mRatBN7.2 Ensembl	4	118,125,607 - 118,226,005 (+)	Ensembl
Rnor_6.0 Ensembl	4	117,371,659 - 117,472,198 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101178 ⟹ ENSRNOP00000079051

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	119,683,076 - 119,783,471 (+)	Ensembl
mRatBN7.2 Ensembl	4	118,135,247 - 118,226,005 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109581 ⟹ ENSRNOP00000076984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	119,683,085 - 119,780,030 (+)	Ensembl
mRatBN7.2 Ensembl	4	118,125,607 - 118,222,762 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113260 ⟹ ENSRNOP00000080223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	119,683,085 - 119,783,471 (+)	Ensembl
mRatBN7.2 Ensembl	4	118,125,607 - 118,226,005 (+)	Ensembl

RefSeq Acc Id:

NM_001106604 ⟹ NP_001100074

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,683,085 - 119,783,471 (+)	NCBI
mRatBN7.2	4	118,125,607 - 118,226,005 (+)	NCBI
Rnor_6.0	4	117,371,544 - 117,472,310 (+)	NCBI
Rnor_5.0	4	181,947,469 - 182,048,235 (+)	NCBI
RGSC_v3.4	4	119,846,037 - 119,946,085 (+)	RGD
Celera	4	107,106,971 - 107,206,695 (+)	NCBI

Sequence:

show sequence

GAGAGGGCAGGTGCGCCTGCGCACAGCCGCAACCGCCAGTCAACTCGCTTCCCCTCCCTTCCTC
TCCCCTCCCCCTCTCCTCCTCTTCCACAGACGCTTGGAGCGCGACGCCAACATGGAGCCGGAGG
ACCTGCCATGGCCTGACGAGCTGGAAGAGGAGGAAGAGGAGGAGGAAGAGGAAGGGAAGGAGGA
GGCGGAGAATGCATCAGCGGCAGCGACCGAGGAGGCCCGGACCTCTGAGGAGACTGGGAGACTG
GAAGAGGAAGAGTTGGAAGGGGCGGGTCCGGAGGTGGACTTGGATTTTAACAGCGAGTCCCAGC
TGCAAGAGAGCACGGACGAAGAGGAGGACGAGCTGGCTAAAGCCTGGCTGCAGGCTCACCCTGA
CCGTCCTGGCCAAGGTTTCTCTCTGACCCCGCCTCCGACTCCGCCTCCGTCCTCCCGGCACCAG
TACAGGCCGGTAGAGCACTGGGGCAAGAGGGAGGTTATTCCACTGACTTACCGTGCATGGCAGC
AGACATCATACCAAGATAATGCTAGAGCCCAGTTTTCCAACTCCAGTACATTGTTATTGGAGCC
AGAATTTCAGTGGGACCCTGAGGAGGTTCAGAGAACAGAGTCTTGGCATCATCTTCCTCAAGAA
AGGGATTCTTTCCAAACCTTGAATATATCCCAGACTGGGATCGACAGAGTAGAAGGAGCAGAAG
TAAAAGACTTGCCCTCTCAGGAGGGAGGTGAATCGGTTCAGGCACAGTGTCCAGTAAAGGAACC
AAAGCTGGATCTCTTGTGTTCTCCATTGCTAGTGATACAGGATGACTTTGCTGCTCCTGATTTG
CCCTTGCTGACATGTATGACCCAAGACCAGGAGTTTGAACCTGATTCCTTGTTTCAACAAAGTG
AACTGGAATTTGCACCTTTGAGAGGGATTCCTGATAAGTCTGAAGATATTGAATGGCTTGCTCG
ACCGTCAGAAGTTAGTGAAGCTTTAATCCAGGCCACCTCAGAATCATCTTCAGACTTAGTTAAC
AGTTGCTTTAGTATATCTCAGCATCCACTCACAGAGGGCCTGCAGGGGAAGGCTAAATCTGATG
TCCTTATTCTGTTTGGTGATGCTAAATACGCCAGCATATATGAAAATGCTGGTGCACACAGTGA
AAGAATTACCGAATTGCAAAGAGAGGTAGACTGTTCTAATCTGAGCATTACCCAGGCTTTTCCA
TCTTCCTTGCCTTCATTTGTTCCTCAAGAACCGACCATTGAGTCAGAATATCATTCCTCCAATC
TCAGAATGTTGAGAGTATCTCCCGACACTCTGCTGACAACTCTTACACAGACAACAGGATCTGT
TGACCAGAAGATTGGAGCAGCTGCAATCTCTTCTCCTTACTCACATGGAGTACAGCCTGGCAGC
TTTCCCCAAGAAGAGTTGCCAGATAGGCATCTTACCGAAGAGATTCGGAAAGTGTCACCTGCTC
CTAGGCCAGCTGGCCAGAAGCCTGAGATGCCAACAGTACCATCTAGTTCTTACTCTAAGGGAAT
AAAATCTGTTTTCTATCGATATCCGATGTCATACAGTCCTCAAGGCAAAGAGCCTCCAAATGTT
TCATCTGTTTCTGGATCAGCTGAGAATGCCCTGCCCCTAACAGTAACCTCTGTTTCCCAGCCAC
AGAGAGAGACAGCTAAAGCTTTCTACCAGCAAACATTATCAGACAGTCTTCTAACTGCAGAAAC
ATTGCCAGTTTCTGTTATTCCTGAATCAGGTGACCAGAAGACTCATTTGCTATCAGGGTTCTCT
CTCTCATATTCTCACAGAGGAGAGGACCTGCCTGAAGATGTAGTGAAAGTTTCCACTGATTCTG
GATCTGTTGACAAGAAGGCTGACATTCCAACAGTGTCCTCTAGTACCTACCAGCACAAAACAAA
ACCTGGTATTATTTACTACCAAGAGTTTCCAGACAGCCATGTGCCTATAGGGACTAGAAAGGTT
GTATCTCAGTCAGGAGCAGCTGGCCAGAAGACTGATCTATCAGCAGTGCCCTCTACTTCCTCTT
CACAGGCAGAGAAGCCTGTTCCCCCCTCCCTGCTAACTTTGCTAGGTAGTCATCTACCTGAAGA
TGTTTTCAAAGCTTCTTATGTTTGTAAGTCATCTGAAGAGCCATCTGGAATAACAGCTCTGACC
TCTGTTTCCTACTCATATAAAGGGAGACCCAATATTTCTCATCAAGAGAAGTTTCCAGACAGTT
ACCTAATTGAAGAGGCCCAGAAAATCTTGGGTTCAACTGTAACAGTAGACCAGAAGACAGTGAC
AGCAAAAGAAAAGCCTAGTGTTTTCTACCAACAGGCCTTGCCAGAAGGTGGTCTATCTGCAGAG
GATCTGCAAGTTGACCAGAACATTGCTATACCAATGGTAACTTCTGCTTCCTTCTCACAAAGAG
AAAAACCTCAGGTTTTCTACCAAGAGGCGCTCTCAGGTGGTCATTTGCCTGGAGAGCCTCCTGG
ACCGCCCGACCAGAACACTGAGGCACCAACAATATCGCCTAGTTCCTACTTCCCTGGAGAAGAG
TCCATTATTTTTTACCAAGCTGGCTTTCCAGGTAACACTCCATCTGTAGTGCCTTTCAAAGTTT
CAAGGATTTCTGAATTAGCTGAACAGAAGACTAACATAACAACAGGACCATCAGGTTCCTACTC
AGTTGGAGAGAAGTCCATTATTTTCTACCATCAGGCCTTGCCAGATGGTCATCTTTCTAAAGAA
GCTTCTCCTGCACCAGCTGACCTGAAGACTGGGGAGCCACCAGTATATTCGGCTTCCTGTTCTG
TTGAGGTAAAGCCCATTATTTTCTACCAGCAGCCTCTGTCGGATAGTCCCCTAACTAAAGGTCA
CAACGTTTCAGTTGTTCCTGGACCAACTGACCAGAAGACTGGTATACCAGCAGTGCCTTCTACT
TCACAGTCATATATAGAGAGGCGTTCTGTTTCTTACCAGCAAGAGTTTCCAAATGTTAGTGAAA
AAGCTTTGAAAGTTCTAGGTGGTGTTAGATCCACTGAACAGAAAACTGAAATACCAGTAGTGTC
TTCTGCTCTCTTACACACAGAGGTACCTACTATTTCTTCCCAAGAGGATTTGCCAAATCTTACT
GAAGAAGCTTTGCAAATTTTAGGTGTTGCTGAAGAAGTTCCTTCTGTCCCTTCACGTGATAAGA
CACGTCTCATCTCTTACCAGAAGAAGTTACCAGATGGTACTGAAGTATCTTTGAAATCAGTAGG
CTTTGGCTCTACTGATCAGAAGACTGGGGCACACATAGTCTCCTCCTCAAGAAGAGAGAAGTCC
AGTGGTTTTCATCAGCAGGAGTTGCCAAATACTTGTGGGGATGCATTAGGTACTTTTCATCCTG
AACCAGTTGCCCAGAAGGTTGGAAAACCAACAGAACCTTCCAACATACAGGGAAAGGCCAGTGC
TTTGTCTCCACAGCAGTTGCCGGCCAGCCATCTTACAGGAGAGGCTCTGAAGGTGTCAGACGGT
TCTGCCTGTGTGGCACAGATGCCTGAGGCACCAGCAGGACCGTCCATTTTCTACTTCCATAAAG
AAAGGTTCAGTAATTATCAAAAGGCCTCACCAGATTGTGATCTAACTGAAAATTCTTTGAAGTC
TTCAACTGTTCCTGGATTGTCTGATCAGAAAAAGAGACCTCCAGTCTCATCTGGTTCCTGTTCA
CACAAAGAGAAACACAAGATTTCGGCTGCAGATTTGCTGGATGCCCAGGCGGCTGAACTGCCAA
CAGTTATTCAGAGATCCTGCTTACATAGAGAAAAGCTGGCAATTTCAACTGTGATCAAACCAGA
TGACCCAAAGATTCCATTACCAACAACTTGTCATGCCTCCTGTGCTCAAAAAGTAAAACCTGTT
ATTTTTGTTCAAAAACAGTTATCAGGTAGAGATCAAAGTGAAGATATTCCGAAGATTTCAACTG
TCTCTGAGCCAACTGTTGCAAACACAGGTGCACCAGTACTTCTGTCTAGTTCTTACCCATACAG
AGAGAAGTCAGATTTCTCTTCCCCAAAGGAACTGCCAGATAGACATCCAGCTAAAGTTGACATG
CAGGCTTCAAGCAGTCTTGGACAAGCTGACCAGATTTCTAGGTTACCTACAGTTCCTCCTGGTA
CTTATTCACACAGTGAAAAGTACCAGCTTATCTCAGAGCATGTACAAGAGCTGATTGATAATTT
GAATTCTTCTGAGTCTTGTCTCAATGCAGACATTATGATGCCTTCAAATTCACAAATTGATGAT
GGAGTTATCATATGTAAGCCAGAATCTTCACGTTTTGCCAATGTTGGCTGTGAGGAAATCCAGG
ATATAGATCATGGTTCCAAAACTCTTAAAGAAATTCAGACTCTCTTAATGGAAGCAGAAAATAT
GGCACTAAAACGATGCAATTTCTCTGTTCCCTTAGTTCCTTTCAGAGATGTTAGTGATGTTTCA
TTTGTACAATCAAAGAAGGTGGTTTGCTTCAAAGAAACCCCCACATCTGATGTTTGTATCCAGA
AGGACTCATTTGCAGAGGAAGTCCCACACACTAAGTATGTACAGAAGGACATCGGTACACAGAC
GAACCTTAAGTACCAGAGGAATGTTAGAAATTGGGAATTTATTAGTTCAGCTACCTTTAGAAGT
CCTCTACATGAAGCAAATGGCACAGCTCGAGTGGCATTTGATGAAAATTTCAGGCAATATAGAG
CTACCAGGTCTGTAATGAGGTCTGAACCTGAAGACTGCAGCACAGGCATTGGGGATAAAATTAT
TATCCCTATGATGACAATCATAAAGAGTGACTCGAGTAGTGATGTAAGTGATGGTTGCTGCTCA
TGGGACAATAATTTACCAGAGTCTTTGGAATCTGTTTCTGATGTTTTTCTAAACTTCTTTCCGT
ATACTTCACCCAAGACAAGCATAACAGATAGCCGAGAAGAGGAGGGCTTGTCAGAGAGTGAAGA
TGGCTATGGTAGTGCAGATTCATTGGCTGCACATGTGAAGTACCTTCTGCAGTGTGAATCCTCA
CTGAATCAAGCCAAACAGATACTTAAGAATGCAGAAGAGGAGGAATATCGAGTCCGAGCCCAAG
CCTGGAATCTAAAGTTCAATTTAGGACGTGACTATGGATACCCCGTTTCAGAGTTAAATGAAGA
TGACAGGAGGAAAGTAGAAGAGATAAAGGCAAAGTTGTTTGGTCATGGAAGAACAACTCACGTG
TCTGAGGTCTTACAGAGTCCACGAGGAATAGGATGTTTGCCTGAAGCTGTATGTGGTCACATTA
TTATTGAGAGCCATGAGAAAGGATGTTACAGGACTCTTACTGCTGAACAACCACGACCAGACAG
CTGCCATTGTGTTTTTCGATCTGTTGATCCTTCAGACTTGATTAGAGGACATCGGAGCCCATCA
TCATGGAGAGGCAGGCACATCAACCTTTCCAGATCGATAGATCAGAGCAATCCCCATTTCAAAA
TAGGGAATTCCTTTCAGTTACAGAGTCATCCCCCATTTGAAAAACTTGTACCTGATGACATCAA
AATTAGCAAGGGTGTTGGAATGCCATTCCATGAACACATGGATCCCCAGCCATCAGAATTAATA
GAACCTACTTGTGTGCCAGCTAAAGAAATGGATTTTTCTTCCTCTTCTGAAATACTGCCCTCTG
AACCCAAGAAGCAGTTCACCACTTCCATCACTTTTTCTTCTCACCAACACTCTAAGTGCATTTC
TGATTCCTCTGGTTTTAAGGTTGATGTTACTGCAGGTAGCCAGTGTACTGGGCCATCTTTAGGG
GTGTTTAAGCCTCATATCCCTGAAGAGCAGATTTCTCCTAGAGATCTTAAACAGAAAATCTCGT
CCCCTTCATCACTTCAAAGGCATAGTTACACACCAGTGACTATTTTAGTTGACAGTAGTAGGCA
AAGACAAAAATTACCTGTTGATTTTGAGCATTCTAATCAAAAAGGAAAACTCTTACAAAGATCA
GCTTTTAATTTTAGCCATTCTGAACCCAGTGTCAGTACAAATGTTAGTTTCAAGGGAGTTCAAT
TTTCTGGTAACGATACCATCGTTAGGCAGGACAAATTAATTTCCACAGTTGAGGTAAAAGAGAA
GAATGTAACTTTAACTCCTGATCTTCCTTCTTGCATTTTTCTTGAGCAAGGAGAAGAAAGCCAC
ACCCCACACACAGATCTTCATATGAGGAAGTGCCCTTCTCCCTCTGGTCTAGACATTGCTTCTT
GCATTTTTCTTGAGCAGCACAAATTCTTTGAGCAAAGCCAAGGCCAGCATGTAGATGATCATGA
AATGAGAGAAGACTACTCTCTCTTCCCTAAGTGCCAGGGTTACATAGCTGCAGACCCTTCTGAC
TTTCCTGATCAGCAGCAATGCAAACCTCCAGGTGTAGATGGCCACGTGAGAAAACAGCACTATC
CTCTTTCTCCAGTTCAGGATTGTGAGGTAGAAGAGGTTCAGTGTATACCCCAATCATACTTTTC
TAATATGGTAAATGTTGAAGCCAAGGTCAGTGATATGGTCTCCCCTGACGCCCCTGACCACTTT
ACAGCAGCATCTACTCCACCTTCAAGTAGAAAAGCACTTTCATGTGTTCGCATAACTCTTTGTC
CCAAGACTCCTTCCAAGTTGGATAGTGGAACCTTAGACGAAAGGTTTCATTCATTGGATCCTGC
TTCTAAAACAAGGATTAATAGTGAGTTTAACTCTGATCTTCGAATTATATCTTCAAGGTCATTG
GAACCAACCTCCAAATTACTGACCTGTAAACCAGTAGCACAGGATCAAGAATCTTTAGTTTTTC
TAGGACCTAAATCTCCACTGGACTTGCAAGTCGCAGAGTCTTCTCTTCCAGATAGTAAGACTAT
TTCTCAGGACTTGAAAACCACACCTCCTCAGAATAGCCAGATAGTAACCTCAAGGCAAACACAA
GTGAACATTTCAGATTTGGAAGAATATTCCAAACCAGAGGGGACTCCAGTACCTGCAGATGGTT
CACAAGAACAGAATAAGGCTCCCTTTACTACATCCTCTGGAATGTTATCATCTGATGCAGTCAC
TCAGGTAACAACAGAAAGTCCAGAAAAGATGACATTTTCATCTGAAATTTTTATTAATGCTGAT
GATCGTGGACAGGACATTCCATACCCCACGACCCAAAATCCATCCAGGTTTGCCTCCTCTTCCT
CAGGGCAGCAAATCACAGCTTCTCAGGGCAAAGACGCCCAGCCTGTGTTGTTGCCATATAAGCC
ATCTGGTAGTTCGAAGATGTACTATGTTCCACTGTTAAAACCAGTTCCGTCATATCTGGATTCC
AAATCAGATACTACTGTTGAGAGCTCACATTCAGGCTCCAATGATGCTATTGCCCCAGACTTTC
CACCTCAAGTGCTAGGCACAAGAGATGATGACCTCTCCACCACTGTAAACATTAAGCACAAAGA
AGGGATCTATAGCAAGAGGGCTGCATCAAAGGGGAAACAACCCTCTCAGAAAGGTAATGCAGAG
GCCCCAGTTCAAATGCCTGTAACTTGGGATAAGAATGTCTATAAGGAAAACCAAGACGAGATCA
TCAGTAGAAGAGTTGTGATCGAGACGGCAGGACCTGAAGAAATGCCATCCCAGGAGAAGGACCT
TGCAGGATCCAGTGATATCACTGTGCAAGACAGAAAAACTGGAAATCTGCCAGACGCTAAATCC
ATTAAACAGAAGGAAGGATCCTTAGAGATAGAGCCTGAGTGTCACTCCGAGTTTGCAAACACCA
CTCACTCTGTCTTCAGGTCAGCCAGCTTTTACTTCCACCACCCAGTGCACCTGCCCCAAGAGCA
GGATCTCTGCCGCGAGTCTTCGGGAAGGAATGTTCTCACGCAGCATCCTTGGAAGGATCTCTTT
CACTGTCATTCAGGGCACAGCGGCCTCCCGCCCCCTGGCCCAAGGTCAGACAACACTGAGATGG
AGTGCACCAGAGTTAAGAGCCTCAGCATGGATTTGAATTTGGGGGGCCATGAGAAGATACATAC
TATCAAGAATCAGGCCAGAGACACAAAAGAAGACAAAAGACCGGCAAATGACCCAAAAAAGGAT
CAGAAGGTCACCCCAGAGCTAACAAGTCAGTGCCCCATGAGTTTGAATGAACTCTGGAACAAGT
ACCAGGAGCGACAGAAGCAGCAGAAACCATCTGGCGCTTGTGATAACAAAGAGCTCTCCTTGGT
GGAACGGCTTGATCGTTTGGCTAAACTGCTTCAGAATCCCATCACACATTCACTCCAGGCCTCA
GAAAGTACTCAAGATGACCGCAGATGGGGACGTGGAGCCAGGGGGTGGACTGGGAGGAGGCAAC
ATCAACAGAAAGGCAAGCAGCAGAGGAAGTGGAGTAAGAGCCTAGAGAGGGGTCACAGTACAGG
TGACTTTAGGAAAAGCAAAGTGCTTTCTCCTCATGAAGGTGGGAAATCCAGTCAGCGTAATATT
GAGAAGATTAAACTAGATAAGTACATCCTGAGAAAGCAGCCAGATTTTAATAATGTCAGCAATA
CCTCCTTGGATTCTAGACCCTCAGAGGAAAGTGAGCTCCTCCTCACAGATAGTCCCAACCTTTT
TTCCAGCACTGAGTCTCCTGTGGAGTCAGATGTATTGACCCACACTGGTAGGGACATGCCTTTA
AATGAGAGGAGTAGCTCCATTTCTACCGTTGACACAGCCCGGCTGATCCAAGCCTTTGGCCACG
ATAGACTGTATTTGTCACCCAGGCAAATTAAATTATACAGTAGTGTCACTAATCAACGGAGGAA
ACATCTGGAGAAGCCATGCAAGCACAAGAGGAAAGCATTGAACACAGCCTGCCCCCAAATGACT
TCTGAGCACACCAGAAGGAGGCACGTCCAGGTGGCAAACCGTATAATGTCTTCTGACTCTGTTT
CATCTGCTGGTAGTTGTTTGAGCTTGGACTCTACTCTGTCCAATGAGGAAAATGTGCACATGTT
GAATAAGGGTGTACAAGCTGGTAACTTGGAGATTGTGACTGGTGCCAAAAAATACACTCAGGAT
GTTGGGGTGACTTTCCCAACGCCCAGTTCTAGTGAGGCCAGATTGGAAGAGGATAGTGATATGA
CTTCTTGGTCAGAAGAAAAAGCCAAAGAGAAAAAGTTCCTTTCCAACTATCTGCGGGGCAAAAA
CTTAAGGAAAAACAAGCCAAATCCCTGTGAAGGAGTCTCATGGTTTGTTCCTGTGGAAAACAGA
AAGTCTGAATCTAAGAAGGAAAACCTGCCCAAGATTTACAGACCTGCTATCTCCTGGTTTGAAC
CAGTAACCCAAACCAAACCCTGGAGGGAGCCACTGAGGGAACAAAACTGGCAGGCACAATGCAT
GAACAGTCGTGGGTCCCTGGGAGGCCCAGGCAGGGATAGTGGCCAGAGTTTTCTTCAGCCATTT
GTGAGAGCAACCCTGCAGGAATCACTTCAGCTTCACAGACCTGATTTCATCTCCCGCTCTGGGG
AGCGGATAAAACGTCTGAAGCTACTAGTCCAGGAGAGGAAGCTACAGAACCTGTTCCAGAATGA
GCGAGAAGCTCTGTTCAACACTGCGAGGCCCCTGCCCAGGAGAGTTCTCTTGGCAGTCCAGAAG
AACAAGCCTATTGGGAAGACGGAAATGATTCGGAGGACCAGACGGTTTTATGAGCAGCTTCCAG
AAGTGAAGAAGAAGAGAGAAGAGGAGAAGAGAAAATCAGAATATACATCCTACCGGCTACGAGC
TCAGCACTATAAAATGAAAGTGACCAATCATCTCCTGGGGAGAAAAGTGCCTTGGGACTGACAT
AAGACTACTTCAGAGCCTAGGAATACTTTTTTTATGAGCCCAAAGAAGCTAATTTATACTTTAA
TGGGTGTGATTTAATAAAGTGGTGTCTTTGTCTGTGTGCACCTTA

hide sequence

RefSeq Acc Id:

XM_039107348 ⟹ XP_038963276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,683,136 - 119,783,462 (+)	NCBI
mRatBN7.2	4	118,125,581 - 118,226,005 (+)	NCBI

RefSeq Acc Id:

XM_039107349 ⟹ XP_038963277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,683,136 - 119,783,462 (+)	NCBI
mRatBN7.2	4	118,125,581 - 118,226,005 (+)	NCBI

RefSeq Acc Id:

XM_039107350 ⟹ XP_038963278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,683,136 - 119,783,462 (+)	NCBI
mRatBN7.2	4	118,125,581 - 118,226,005 (+)	NCBI

RefSeq Acc Id:

XM_039107352 ⟹ XP_038963280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,683,136 - 119,783,462 (+)	NCBI
mRatBN7.2	4	118,125,581 - 118,226,005 (+)	NCBI

RefSeq Acc Id:

XM_039107353 ⟹ XP_038963281

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,683,136 - 119,783,462 (+)	NCBI
mRatBN7.2	4	118,125,581 - 118,226,005 (+)	NCBI

RefSeq Acc Id:

XM_039107354 ⟹ XP_038963282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,704,030 - 119,783,462 (+)	NCBI
mRatBN7.2	4	118,146,549 - 118,226,005 (+)	NCBI

RefSeq Acc Id:

XM_039107355 ⟹ XP_038963283

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,683,136 - 119,734,435 (+)	NCBI
mRatBN7.2	4	118,125,581 - 118,176,973 (+)	NCBI

RefSeq Acc Id:

XM_063285805 ⟹ XP_063141875

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,683,136 - 119,783,462 (+)	NCBI

RefSeq Acc Id:

XM_063285806 ⟹ XP_063141876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,683,136 - 119,783,462 (+)	NCBI

RefSeq Acc Id:

XM_063285807 ⟹ XP_063141877

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,683,136 - 119,783,462 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100074	(Get FASTA)	NCBI Sequence Viewer
	XP_038963276	(Get FASTA)	NCBI Sequence Viewer
	XP_038963277	(Get FASTA)	NCBI Sequence Viewer
	XP_038963278	(Get FASTA)	NCBI Sequence Viewer
	XP_038963280	(Get FASTA)	NCBI Sequence Viewer
	XP_038963281	(Get FASTA)	NCBI Sequence Viewer
	XP_038963282	(Get FASTA)	NCBI Sequence Viewer
	XP_038963283	(Get FASTA)	NCBI Sequence Viewer
	XP_063141875	(Get FASTA)	NCBI Sequence Viewer
	XP_063141876	(Get FASTA)	NCBI Sequence Viewer
	XP_063141877	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL91198	(Get FASTA)	NCBI Sequence Viewer
	EDL91199	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000050674
	ENSRNOP00000050674.5
	ENSRNOP00000076984
	ENSRNOP00000076984.2
	ENSRNOP00000079051
	ENSRNOP00000079051.2
	ENSRNOP00000080223
	ENSRNOP00000080223.1

RefSeq Acc Id:

NP_001100074 ⟸ NM_001106604

- UniProtKB:

A0A8I5ZSK7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEPEDLPWPDELEEEEEEEEEEGKEEAENASAAATEEARTSEETGRLEEEELEGAGPEVDLDFN
SESQLQESTDEEEDELAKAWLQAHPDRPGQGFSLTPPPTPPPSSRHQYRPVEHWGKREVIPLTY
RAWQQTSYQDNARAQFSNSSTLLLEPEFQWDPEEVQRTESWHHLPQERDSFQTLNISQTGIDRV
EGAEVKDLPSQEGGESVQAQCPVKEPKLDLLCSPLLVIQDDFAAPDLPLLTCMTQDQEFEPDSL
FQQSELEFAPLRGIPDKSEDIEWLARPSEVSEALIQATSESSSDLVNSCFSISQHPLTEGLQGK
AKSDVLILFGDAKYASIYENAGAHSERITELQREVDCSNLSITQAFPSSLPSFVPQEPTIESEY
HSSNLRMLRVSPDTLLTTLTQTTGSVDQKIGAAAISSPYSHGVQPGSFPQEELPDRHLTEEIRK
VSPAPRPAGQKPEMPTVPSSSYSKGIKSVFYRYPMSYSPQGKEPPNVSSVSGSAENALPLTVTS
VSQPQRETAKAFYQQTLSDSLLTAETLPVSVIPESGDQKTHLLSGFSLSYSHRGEDLPEDVVKV
STDSGSVDKKADIPTVSSSTYQHKTKPGIIYYQEFPDSHVPIGTRKVVSQSGAAGQKTDLSAVP
STSSSQAEKPVPPSLLTLLGSHLPEDVFKASYVCKSSEEPSGITALTSVSYSYKGRPNISHQEK
FPDSYLIEEAQKILGSTVTVDQKTVTAKEKPSVFYQQALPEGGLSAEDLQVDQNIAIPMVTSAS
FSQREKPQVFYQEALSGGHLPGEPPGPPDQNTEAPTISPSSYFPGEESIIFYQAGFPGNTPSVV
PFKVSRISELAEQKTNITTGPSGSYSVGEKSIIFYHQALPDGHLSKEASPAPADLKTGEPPVYS
ASCSVEVKPIIFYQQPLSDSPLTKGHNVSVVPGPTDQKTGIPAVPSTSQSYIERRSVSYQQEFP
NVSEKALKVLGGVRSTEQKTEIPVVSSALLHTEVPTISSQEDLPNLTEEALQILGVAEEVPSVP
SRDKTRLISYQKKLPDGTEVSLKSVGFGSTDQKTGAHIVSSSRREKSSGFHQQELPNTCGDALG
TFHPEPVAQKVGKPTEPSNIQGKASALSPQQLPASHLTGEALKVSDGSACVAQMPEAPAGPSIF
YFHKERFSNYQKASPDCDLTENSLKSSTVPGLSDQKKRPPVSSGSCSHKEKHKISAADLLDAQA
AELPTVIQRSCLHREKLAISTVIKPDDPKIPLPTTCHASCAQKVKPVIFVQKQLSGRDQSEDIP
KISTVSEPTVANTGAPVLLSSSYPYREKSDFSSPKELPDRHPAKVDMQASSSLGQADQISRLPT
VPPGTYSHSEKYQLISEHVQELIDNLNSSESCLNADIMMPSNSQIDDGVIICKPESSRFANVGC
EEIQDIDHGSKTLKEIQTLLMEAENMALKRCNFSVPLVPFRDVSDVSFVQSKKVVCFKETPTSD
VCIQKDSFAEEVPHTKYVQKDIGTQTNLKYQRNVRNWEFISSATFRSPLHEANGTARVAFDENF
RQYRATRSVMRSEPEDCSTGIGDKIIIPMMTIIKSDSSSDVSDGCCSWDNNLPESLESVSDVFL
NFFPYTSPKTSITDSREEEGLSESEDGYGSADSLAAHVKYLLQCESSLNQAKQILKNAEEEEYR
VRAQAWNLKFNLGRDYGYPVSELNEDDRRKVEEIKAKLFGHGRTTHVSEVLQSPRGIGCLPEAV
CGHIIIESHEKGCYRTLTAEQPRPDSCHCVFRSVDPSDLIRGHRSPSSWRGRHINLSRSIDQSN
PHFKIGNSFQLQSHPPFEKLVPDDIKISKGVGMPFHEHMDPQPSELIEPTCVPAKEMDFSSSSE
ILPSEPKKQFTTSITFSSHQHSKCISDSSGFKVDVTAGSQCTGPSLGVFKPHIPEEQISPRDLK
QKISSPSSLQRHSYTPVTILVDSSRQRQKLPVDFEHSNQKGKLLQRSAFNFSHSEPSVSTNVSF
KGVQFSGNDTIVRQDKLISTVEVKEKNVTLTPDLPSCIFLEQGEESHTPHTDLHMRKCPSPSGL
DIASCIFLEQHKFFEQSQGQHVDDHEMREDYSLFPKCQGYIAADPSDFPDQQQCKPPGVDGHVR
KQHYPLSPVQDCEVEEVQCIPQSYFSNMVNVEAKVSDMVSPDAPDHFTAASTPPSSRKALSCVR
ITLCPKTPSKLDSGTLDERFHSLDPASKTRINSEFNSDLRIISSRSLEPTSKLLTCKPVAQDQE
SLVFLGPKSPLDLQVAESSLPDSKTISQDLKTTPPQNSQIVTSRQTQVNISDLEEYSKPEGTPV
PADGSQEQNKAPFTTSSGMLSSDAVTQVTTESPEKMTFSSEIFINADDRGQDIPYPTTQNPSRF
ASSSSGQQITASQGKDAQPVLLPYKPSGSSKMYYVPLLKPVPSYLDSKSDTTVESSHSGSNDAI
APDFPPQVLGTRDDDLSTTVNIKHKEGIYSKRAASKGKQPSQKGNAEAPVQMPVTWDKNVYKEN
QDEIISRRVVIETAGPEEMPSQEKDLAGSSDITVQDRKTGNLPDAKSIKQKEGSLEIEPECHSE
FANTTHSVFRSASFYFHHPVHLPQEQDLCRESSGRNVLTQHPWKDLFHCHSGHSGLPPPGPRSD
NTEMECTRVKSLSMDLNLGGHEKIHTIKNQARDTKEDKRPANDPKKDQKVTPELTSQCPMSLNE
LWNKYQERQKQQKPSGACDNKELSLVERLDRLAKLLQNPITHSLQASESTQDDRRWGRGARGWT
GRRQHQQKGKQQRKWSKSLERGHSTGDFRKSKVLSPHEGGKSSQRNIEKIKLDKYILRKQPDFN
NVSNTSLDSRPSEESELLLTDSPNLFSSTESPVESDVLTHTGRDMPLNERSSSISTVDTARLIQ
AFGHDRLYLSPRQIKLYSSVTNQRRKHLEKPCKHKRKALNTACPQMTSEHTRRRHVQVANRIMS
SDSVSSAGSCLSLDSTLSNEENVHMLNKGVQAGNLEIVTGAKKYTQDVGVTFPTPSSSEARLEE
DSDMTSWSEEKAKEKKFLSNYLRGKNLRKNKPNPCEGVSWFVPVENRKSESKKENLPKIYRPAI
SWFEPVTQTKPWREPLREQNWQAQCMNSRGSLGGPGRDSGQSFLQPFVRATLQESLQLHRPDFI
SRSGERIKRLKLLVQERKLQNLFQNEREALFNTARPLPRRVLLAVQKNKPIGKTEMIRRTRRFY
EQLPEVKKKREEEKRKSEYTSYRLRAQHYKMKVTNHLLGRKVPWD

hide sequence

Ensembl Acc Id:

ENSRNOP00000050674 ⟸ ENSRNOT00000045735

RefSeq Acc Id:	XP_038963276 ⟸ XM_039107348
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZSK7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963281 ⟸ XM_039107353
- Peptide Label:	isoform X7
- UniProtKB:	F1LVG9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963277 ⟸ XM_039107349
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZSK7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963280 ⟸ XM_039107352
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZSK7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963278 ⟸ XM_039107350
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZSK7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963283 ⟸ XM_039107355
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038963282 ⟸ XM_039107354
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6G4M9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000080223 ⟸ ENSRNOT00000113260

Ensembl Acc Id:

ENSRNOP00000079051 ⟸ ENSRNOT00000101178

Ensembl Acc Id:

ENSRNOP00000076984 ⟸ ENSRNOT00000109581

RefSeq Acc Id:	XP_063141877 ⟸ XM_063285807
- Peptide Label:	isoform X8
- UniProtKB:	F1LVG9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141875 ⟸ XM_063285805
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZSK7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141876 ⟸ XM_063285806
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZSK7 (UniProtKB/TrEMBL)

Protein Domains

ALMS motif

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693199

Promoter ID:

EPDNEW_R3722

Type:

multiple initiation site

Name:

Alms1_1

Description:

ALMS1, centrosome and basal body associated protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	117,371,626 - 117,371,686	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311590	AgrOrtholog
BioCyc Gene	G2FUF-43937	BioCyc
Ensembl Genes	ENSRNOG00000022343	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000045735	ENTREZGENE
	ENSRNOT00000045735.7	UniProtKB/TrEMBL
	ENSRNOT00000101178	ENTREZGENE
	ENSRNOT00000101178.2	UniProtKB/TrEMBL
	ENSRNOT00000109581	ENTREZGENE
	ENSRNOT00000109581.2	UniProtKB/TrEMBL
	ENSRNOT00000113260	ENTREZGENE
	ENSRNOT00000113260.2	UniProtKB/TrEMBL
InterPro	ALMS_motif	UniProtKB/TrEMBL
	ALMS_repeat	UniProtKB/TrEMBL
NCBI Gene	297408	ENTREZGENE
PANTHER	ALMS1-RELATED	UniProtKB/TrEMBL
	PTHR21553:SF22	UniProtKB/TrEMBL
Pfam	ALMS_motif	UniProtKB/TrEMBL
	ALMS_repeat	UniProtKB/TrEMBL
PhenoGen	Alms1	PhenoGen
RatGTEx	ENSRNOG00000022343	RatGTEx
UniProt	A0A8I5XVN1_RAT	UniProtKB/TrEMBL
	A0A8I5ZSK7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G4M9	ENTREZGENE, UniProtKB/TrEMBL
	F1LVG9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-05-15	Alms1	Alstrom syndrome 1 homolog (human)	Alms1	Alstrom syndrome 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-26	Alms1	Alstrom syndrome 1	Alms1_predicted	Alstrom syndrome 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Alms1_predicted	Alstrom syndrome 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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