Snx5 (sorting nexin 5) - Rat Genome Database

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Gene: Snx5 (sorting nexin 5) Rattus norvegicus
Analyze
Symbol: Snx5
Name: sorting nexin 5
RGD ID: 1310190
Description: Enables D1 dopamine receptor binding activity and phosphatidylinositol phosphate binding activity. Involved in epidermal growth factor catabolic process and negative regulation of blood pressure. Located in brush border and endosome. Orthologous to human SNX5 (sorting nexin 5); PARTICIPATES IN retromer-mediated pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cobalt dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC296199; sorting nexin-5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83152,075,258 - 152,094,508 (-)NCBIGRCr8
mRatBN7.23131,621,875 - 131,641,127 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3131,621,880 - 131,641,192 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3135,545,743 - 135,564,976 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03144,129,840 - 144,149,072 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03141,833,019 - 141,852,252 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03138,378,032 - 138,397,944 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3138,378,202 - 138,397,870 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03144,812,043 - 144,831,955 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43132,778,470 - 132,797,964 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13132,684,643 - 132,703,178 (-)NCBI
Celera3130,517,371 - 130,536,866 (-)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Retromer and sorting nexins in endosomal sorting. Gallon M and Cullen PJ, Biochem Soc Trans. 2015 Feb;43(1):33-47. doi: 10.1042/BST20140290.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. The phox domain of sorting nexin 5 lacks phosphatidylinositol 3-phosphate (PtdIns(3)P) specificity and preferentially binds to phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). Koharudin LM, etal., J Biol Chem. 2009 Aug 28;284(35):23697-707. doi: 10.1074/jbc.M109.008995. Epub 2009 Jun 24.
4. Inhibitory regulation of EGF receptor degradation by sorting nexin 5. Liu H, etal., Biochem Biophys Res Commun. 2006 Apr 7;342(2):537-46. doi: 10.1016/j.bbrc.2006.01.179. Epub 2006 Feb 9.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Novel role of sorting nexin 5 in renal D(1) dopamine receptor trafficking and function: implications for hypertension. Villar VA, etal., FASEB J. 2013 May;27(5):1808-19. doi: 10.1096/fj.12-208439. Epub 2012 Nov 29.
Additional References at PubMed
PMID:12477932   PMID:15561769   PMID:17148574   PMID:18854019   PMID:19619496   PMID:25468996   PMID:25825816   PMID:34134000  


Genomics

Comparative Map Data
Snx5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83152,075,258 - 152,094,508 (-)NCBIGRCr8
mRatBN7.23131,621,875 - 131,641,127 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3131,621,880 - 131,641,192 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3135,545,743 - 135,564,976 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03144,129,840 - 144,149,072 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03141,833,019 - 141,852,252 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03138,378,032 - 138,397,944 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3138,378,202 - 138,397,870 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03144,812,043 - 144,831,955 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43132,778,470 - 132,797,964 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13132,684,643 - 132,703,178 (-)NCBI
Celera3130,517,371 - 130,536,866 (-)NCBICelera
Cytogenetic Map3q41NCBI
SNX5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382017,941,600 - 17,968,794 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2017,941,597 - 17,968,980 (-)EnsemblGRCh38hg38GRCh38
GRCh372017,922,244 - 17,949,437 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362017,870,244 - 17,897,490 (-)NCBINCBI36Build 36hg18NCBI36
Build 342017,870,245 - 17,897,490NCBI
Celera2017,996,791 - 18,024,035 (-)NCBICelera
Cytogenetic Map20p11.23NCBI
HuRef2017,885,114 - 17,912,355 (-)NCBIHuRef
CHM1_12017,922,265 - 17,949,513 (-)NCBICHM1_1
T2T-CHM13v2.02017,992,739 - 18,019,917 (-)NCBIT2T-CHM13v2.0
Snx5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392144,092,043 - 144,112,713 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2144,092,043 - 144,112,826 (-)EnsemblGRCm39 Ensembl
GRCm382144,250,123 - 144,270,902 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2144,250,123 - 144,270,906 (-)EnsemblGRCm38mm10GRCm38
MGSCv372144,075,862 - 144,096,267 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362143,941,567 - 143,961,972 (-)NCBIMGSCv36mm8
Celera2145,438,570 - 145,458,831 (-)NCBICelera
Cytogenetic Map2G1NCBI
cM Map270.98NCBI
Snx5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541526,785,326 - 26,796,566 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541526,786,836 - 26,805,762 (-)NCBIChiLan1.0ChiLan1.0
SNX5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22118,831,386 - 18,858,575 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12018,828,224 - 18,855,413 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02017,901,450 - 17,928,664 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12017,879,605 - 17,907,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2017,879,605 - 17,907,074 (-)Ensemblpanpan1.1panPan2
SNX5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1245,085,140 - 5,110,942 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl245,084,986 - 5,110,283 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha245,018,013 - 5,043,809 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0245,494,248 - 5,520,060 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl245,494,092 - 5,520,060 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1245,107,154 - 5,133,122 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0245,201,071 - 5,227,082 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0245,477,333 - 5,503,134 (+)NCBIUU_Cfam_GSD_1.0
Snx5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640153,736,463 - 153,759,793 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364852,168,243 - 2,190,402 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364852,167,987 - 2,191,157 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1726,352,949 - 26,381,670 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11726,352,945 - 26,381,677 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21729,777,001 - 29,793,996 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1247,001,684 - 47,028,510 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl247,002,443 - 47,028,293 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660781,669,891 - 1,697,099 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474118,953,202 - 18,974,545 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474118,954,066 - 18,974,616 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snx5
49 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:235
Count of miRNA genes:98
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000008934, ENSRNOT00000074606
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat

Markers in Region
RH134313  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22160,851,088 - 160,851,302 (+)MAPPERmRatBN7.2
mRatBN7.23131,621,937 - 131,622,156 (+)MAPPERmRatBN7.2
Rnor_6.03138,378,261 - 138,378,479NCBIRnor6.0
Rnor_6.02174,535,719 - 174,535,932NCBIRnor6.0
Rnor_5.03144,812,272 - 144,812,490UniSTSRnor5.0
Rnor_5.02193,879,931 - 193,880,144UniSTSRnor5.0
RGSC_v3.42166,980,848 - 166,981,061UniSTSRGSC3.4
RGSC_v3.43132,778,699 - 132,778,917UniSTSRGSC3.4
Celera3130,517,600 - 130,517,818UniSTS
Celera2155,039,521 - 155,039,734UniSTS
RH 3.4 Map31185.1UniSTS
Cytogenetic Map3q41UniSTS
AA851347  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23131,622,553 - 131,623,249 (+)MAPPERmRatBN7.2
Rnor_6.03138,378,877 - 138,379,572NCBIRnor6.0
Rnor_5.03144,812,888 - 144,813,583UniSTSRnor5.0
RGSC_v3.43132,779,315 - 132,780,010UniSTSRGSC3.4
Celera3130,518,216 - 130,518,911UniSTS
RH 3.4 Map31183.1UniSTS
Cytogenetic Map3q41UniSTS
RH140677  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map11519.2UniSTS
Cytogenetic Map3q41UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000008934   ⟹   ENSRNOP00000008934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3131,621,880 - 131,641,192 (-)Ensembl
Rnor_6.0 Ensembl3138,378,848 - 138,397,508 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000074606   ⟹   ENSRNOP00000066353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3131,621,880 - 131,641,192 (-)Ensembl
Rnor_6.0 Ensembl3138,378,202 - 138,397,870 (-)Ensembl
RefSeq Acc Id: NM_001399298   ⟹   NP_001386227
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83152,075,258 - 152,094,508 (-)NCBI
mRatBN7.23131,621,875 - 131,641,127 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001386227 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI60883 (Get FASTA)   NCBI Sequence Viewer  
  B1H267 (Get FASTA)   NCBI Sequence Viewer  
  EDL95174 (Get FASTA)   NCBI Sequence Viewer  
  EDL95175 (Get FASTA)   NCBI Sequence Viewer  
  EDL95176 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000008934.6
  ENSRNOP00000066353.2
Ensembl Acc Id: ENSRNOP00000008934   ⟸   ENSRNOT00000008934
Ensembl Acc Id: ENSRNOP00000066353   ⟸   ENSRNOT00000074606
RefSeq Acc Id: NP_001386227   ⟸   NM_001399298
- UniProtKB: B1H267 (UniProtKB/Swiss-Prot),   A0A8L2Q3Z7 (UniProtKB/TrEMBL)
Protein Domains
BAR   PX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1H267-F1-model_v2 AlphaFold B1H267 1-404 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692493
Promoter ID:EPDNEW_R3003
Type:multiple initiation site
Name:Snx5_2
Description:sorting nexin 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3004  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03138,397,559 - 138,397,619EPDNEW
RGD ID:13692480
Promoter ID:EPDNEW_R3004
Type:multiple initiation site
Name:Snx5_1
Description:sorting nexin 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3003  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03138,397,866 - 138,397,926EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310190 AgrOrtholog
BioCyc Gene G2FUF-47609 BioCyc
Ensembl Genes ENSRNOG00000006077 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008934.9 UniProtKB/TrEMBL
  ENSRNOT00000074606.3 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7382263 IMAGE-MGC_LOAD
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PX_SNX5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNX5 UniProtKB/Swiss-Prot
  SNX5/SNX6/SNX32 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vps5_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:188288 IMAGE-MGC_LOAD
NCBI Gene 296199 ENTREZGENE
PANTHER PTHR45850:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SORTING NEXIN FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vps5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snx5 PhenoGen
PIRSF Snx5_Snx6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006077 RatGTEx
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot
  SSF64268 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2Q3Z7 ENTREZGENE, UniProtKB/TrEMBL
  B1H267 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Snx5  sorting nexin 5   Snx5_predicted  sorting nexin 5 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Snx5_predicted  sorting nexin 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED