Rab6b (RAB6B, member RAS oncogene family) - Rat Genome Database

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Gene: Rab6b (RAB6B, member RAS oncogene family) Rattus norvegicus
Analyze
Symbol: Rab6b
Name: RAB6B, member RAS oncogene family
RGD ID: 1309958
Description: Predicted to enable GTPase activity and myosin V binding activity. Predicted to be involved in several processes, including Golgi vesicle transport; protein localization to Golgi membrane; and retrograde transport, endosome to Golgi. Is active in presynapse. Orthologous to human RAB6B (RAB6B, member RAS oncogene family); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bis(2-ethylhexyl) phthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC363123; ras-related protein Rab-6B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,574,223 - 112,642,911 (+)NCBIGRCr8
mRatBN7.28103,695,328 - 103,764,023 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,695,631 - 103,805,732 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8109,354,470 - 109,423,481 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,553,634 - 107,622,649 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,396,318 - 105,465,325 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,600,375 - 111,668,817 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,600,532 - 111,668,808 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08110,991,008 - 111,059,794 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,151,061 - 108,192,013 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,124,726 - 108,209,832 (+)NCBI
Celera8103,101,314 - 103,142,215 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
Cuprizon  (EXP,ISO)
cyclosporin A  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (EXP)
diethyl phthalate  (EXP)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
fipronil  (EXP)
folic acid  (ISO)
furan  (EXP)
gamma-tocopherol  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
kojic acid  (ISO)
lead(0)  (ISO)
methoxychlor  (EXP)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorohexanesulfonic acid  (ISO)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium dichromate  (EXP)
sunitinib  (ISO)
thioacetamide  (EXP)
titanium dioxide  (EXP,ISO)
tocopherol  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)
endomembrane system  (IBA)
Golgi apparatus  (IBA,ISO)
Golgi membrane  (ISO)
presynapse  (EXP,IDA,IEP)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Quantitative analysis of synaptic vesicle Rabs uncovers distinct yet overlapping roles for Rab3a and Rab27b in Ca2+-triggered exocytosis. Pavlos NJ, etal., J Neurosci. 2010 Oct 6;30(40):13441-53. doi: 10.1523/JNEUROSCI.0907-10.2010.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:24006491  


Genomics

Comparative Map Data
Rab6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,574,223 - 112,642,911 (+)NCBIGRCr8
mRatBN7.28103,695,328 - 103,764,023 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,695,631 - 103,805,732 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8109,354,470 - 109,423,481 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,553,634 - 107,622,649 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,396,318 - 105,465,325 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,600,375 - 111,668,817 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,600,532 - 111,668,808 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08110,991,008 - 111,059,794 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,151,061 - 108,192,013 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,124,726 - 108,209,832 (+)NCBI
Celera8103,101,314 - 103,142,215 (+)NCBICelera
Cytogenetic Map8q32NCBI
RAB6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,824,235 - 133,895,882 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,824,235 - 133,895,882 (-)EnsemblGRCh38hg38GRCh38
GRCh373133,543,079 - 133,614,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,025,769 - 135,097,381 (-)NCBINCBI36Build 36hg18NCBI36
Build 343135,025,784 - 135,097,137NCBI
Celera3131,968,881 - 132,040,477 (-)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3130,921,268 - 130,992,822 (-)NCBIHuRef
CHM1_13133,507,024 - 133,578,520 (-)NCBICHM1_1
T2T-CHM13v2.03136,569,430 - 136,641,051 (-)NCBIT2T-CHM13v2.0
Rab6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,988,866 - 103,062,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9102,988,986 - 103,062,475 (+)EnsemblGRCm39 Ensembl
GRCm389103,111,667 - 103,185,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,111,787 - 103,185,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv379103,014,404 - 103,087,600 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369102,970,224 - 103,043,420 (+)NCBIMGSCv36mm8
Celera9102,662,484 - 102,735,933 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map954.88NCBI
Rab6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,732,616 - 4,781,094 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555014,751,647 - 4,781,094 (+)NCBIChiLan1.0ChiLan1.0
RAB6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,748,402 - 131,820,183 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,753,131 - 131,824,912 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,869,494 - 130,941,280 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13138,344,807 - 138,416,358 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3138,344,815 - 138,416,358 (-)Ensemblpanpan1.1panPan2
RAB6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,714,723 - 30,754,765 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2330,717,062 - 30,749,188 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2330,693,860 - 30,754,169 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02331,235,166 - 31,295,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,235,171 - 31,295,965 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12330,931,304 - 30,989,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02330,986,735 - 31,047,041 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,234,354 - 31,294,724 (-)NCBIUU_Cfam_GSD_1.0
Rab6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,209,010 - 70,271,228 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365296,969,284 - 7,031,918 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365296,969,507 - 7,031,733 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,012,268 - 75,075,239 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11375,012,267 - 75,075,324 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,510,690 - 82,573,714 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,472,615 - 56,541,083 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,472,634 - 56,541,434 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604129,455,217 - 29,523,670 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,133,949 - 10,197,551 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473010,134,215 - 10,197,534 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab6b
288 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:602
Count of miRNA genes:265
Interacting mature miRNAs:363
Transcripts:ENSRNOT00000012219
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)888612425107550209Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8102370617108923645Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat

Markers in Region
D8Rat175  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,687,536 - 103,687,659 (+)MAPPERmRatBN7.2
Rnor_6.08111,592,312 - 111,592,434NCBIRnor6.0
Rnor_5.08110,982,909 - 110,983,031UniSTSRnor5.0
RGSC_v3.48108,114,913 - 108,115,036RGDRGSC3.4
RGSC_v3.48108,114,914 - 108,115,036UniSTSRGSC3.4
RGSC_v3.18108,134,368 - 108,134,491RGD
Celera8103,066,183 - 103,066,305UniSTS
SHRSP x BN Map866.2399RGD
SHRSP x BN Map866.2399UniSTS
Cytogenetic Map8q32UniSTS
RH134267  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,763,734 - 103,763,916 (+)MAPPERmRatBN7.2
Rnor_6.08111,668,529 - 111,668,710NCBIRnor6.0
Rnor_5.08111,059,512 - 111,059,693UniSTSRnor5.0
RGSC_v3.48108,191,734 - 108,191,915UniSTSRGSC3.4
Celera8103,141,936 - 103,142,117UniSTS
RH 3.4 Map81158.0UniSTS
Cytogenetic Map8q32UniSTS
RH141805  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,761,457 - 103,761,638 (+)MAPPERmRatBN7.2
Rnor_6.08111,666,252 - 111,666,432NCBIRnor6.0
Rnor_5.08111,057,235 - 111,057,415UniSTSRnor5.0
RGSC_v3.48108,189,457 - 108,189,637UniSTSRGSC3.4
Celera8103,139,659 - 103,139,839UniSTS
RH 3.4 Map81163.8UniSTS
Cytogenetic Map8q32UniSTS
RH125121  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,763,855 - 103,763,998 (+)MAPPERmRatBN7.2
Rnor_6.08111,668,650 - 111,668,792NCBIRnor6.0
Rnor_5.08111,059,633 - 111,059,775UniSTSRnor5.0
RGSC_v3.48108,191,855 - 108,191,997UniSTSRGSC3.4
Celera8103,142,057 - 103,142,199UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 90 89 58 25 58 6 217 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000012219   ⟹   ENSRNOP00000012219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl8111,627,856 - 111,668,808 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081952   ⟹   ENSRNOP00000068600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8103,695,631 - 103,805,732 (+)Ensembl
Rnor_6.0 Ensembl8111,600,532 - 111,664,987 (+)Ensembl
RefSeq Acc Id: NM_001108775   ⟹   NP_001102245
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88112,574,223 - 112,642,911 (+)NCBI
mRatBN7.28103,695,328 - 103,764,023 (+)NCBI
Rnor_6.08111,627,856 - 111,668,808 (+)NCBI
Rnor_5.08110,991,008 - 111,059,794 (+)NCBI
RGSC_v3.48108,151,061 - 108,192,013 (+)RGD
Celera8103,101,314 - 103,142,215 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102245 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL77393 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000068600.1
RefSeq Acc Id: NP_001102245   ⟸   NM_001108775
- UniProtKB: A0A0G2JT78 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012219   ⟸   ENSRNOT00000012219
Ensembl Acc Id: ENSRNOP00000068600   ⟸   ENSRNOT00000081952

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JT78-F1-model_v2 AlphaFold A0A0G2JT78 1-208 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696230
Promoter ID:EPDNEW_R6752
Type:multiple initiation site
Name:Rab6b_1
Description:RAB6B, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08111,600,552 - 111,600,612EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309958 AgrOrtholog
BioCyc Gene G2FUF-29334 BioCyc
Ensembl Genes ENSRNOG00000009198 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000081952.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report rno:363123 UniProtKB/TrEMBL
NCBI Gene 363123 ENTREZGENE
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-6B UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PhenoGen Rab6b PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009198 RatGTEx
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JT78 ENTREZGENE, UniProtKB/TrEMBL
  A6I2I4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rab6b  RAB6B, member RAS oncogene family   Rab6b_predicted  RAB6B, member RAS oncogene family (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rab6b_predicted  RAB6B, member RAS oncogene family (predicted)      Symbol and Name status set to approved 70820 APPROVED