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Gene: Eya3 (EYA transcriptional coactivator and phosphatase 3) Rattus norvegicus

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Symbol:

Eya3

Name:

EYA transcriptional coactivator and phosphatase 3

RGD ID:

1309932

Description:

Predicted to enable chromatin binding activity and phosphoprotein phosphatase activity. Predicted to be involved in several processes, including negative regulation of extrinsic apoptotic signaling pathway in absence of ligand; positive regulation of DNA repair; and response to ionizing radiation. Predicted to be located in cytoplasm. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human EYA3 (EYA transcriptional coactivator and phosphatase 3); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

eyes absent 3; eyes absent 3 homolog; eyes absent 3 homolog (Drosophila); eyes absent homolog 3; eyes absent homolog 3 (Drosophila); LOC313027

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	150,090,535 - 150,218,855 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	150,137,256 - 150,218,852 (+)	Ensembl				GRCr8
mRatBN7.2	5	144,806,523 - 144,934,522 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	144,806,577 - 144,934,518 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	147,554,161 - 147,632,926 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	149,323,743 - 149,402,508 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	149,311,255 - 149,391,185 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	150,833,754 - 150,915,390 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	150,787,043 - 150,913,757 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	154,501,246 - 154,582,998 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	152,427,552 - 152,507,813 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	143,279,068 - 143,358,777 (+)	NCBI		Celera
RGSC_v3.1	5	152,439,701 - 152,546,295 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-amino-2,6-dinitrotoluene (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzbromarone (ISO)

benzo[a]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

glyphosate (EXP)

indometacin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

ochratoxin A (EXP)

paracetamol (EXP,ISO)

phenylmercury acetate (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

theophylline (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cell differentiation (IBA)

chromatin organization (IEA)

chromatin remodeling (IEA)

DNA damage response (IEA)

DNA repair (IEA)

DNA-templated transcription (IEA)

double-strand break repair (IEA,ISO)

negative regulation of extrinsic apoptotic signaling pathway in absence of ligand (IBA)

positive regulation of DNA repair (IBA,IEA,ISO)

protein dephosphorylation (ISO)

response to ionizing radiation (IEA,ISO)

Cellular Component

cytoplasm (IEA)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

transcription regulator complex (ISO)

Molecular Function

chromatin binding (ISO)

histone H2AXY142 phosphatase activity (IEA,ISO)

hydrolase activity (IEA)

metal ion binding (IEA)

phosphoprotein phosphatase activity (IEA)

protein binding (IPI,ISO)

protein tyrosine phosphatase activity (IBA,IEA,ISO)

protein tyrosine/serine/threonine phosphatase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ataxia telangiectasia-mutated (ATM) signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Cooperation of six and eya in activation of their target genes through nuclear translocation of Eya.	Ohto H, etal., Mol Cell Biol 1999 Oct;19(10):6815-24.
5.	Push back to respond better: regulatory inhibition of the DNA double-strand break response.	Panier S and Durocher D, Nat Rev Mol Cell Biol. 2013 Oct;14(10):661-72. doi: 10.1038/nrm3659. Epub 2013 Sep 4.
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:14628042	PMID:14628052	PMID:19008232	PMID:19234442	PMID:19351884

Genomics

Comparative Map Data

Eya3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	150,090,535 - 150,218,855 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	150,137,256 - 150,218,852 (+)	Ensembl				GRCr8
mRatBN7.2	5	144,806,523 - 144,934,522 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	144,806,577 - 144,934,518 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	147,554,161 - 147,632,926 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	149,323,743 - 149,402,508 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	149,311,255 - 149,391,185 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	150,833,754 - 150,915,390 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	150,787,043 - 150,913,757 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	154,501,246 - 154,582,998 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	152,427,552 - 152,507,813 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	143,279,068 - 143,358,777 (+)	NCBI		Celera
RGSC_v3.1	5	152,439,701 - 152,546,295 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

EYA3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	27,970,344 - 28,088,610 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	27,970,344 - 28,088,731 (-)	Ensembl			hg38	GRCh38
GRCh37	1	28,296,855 - 28,415,121 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	28,173,406 - 28,287,718 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	27,999,126 - 28,099,273	NCBI
Celera	1	26,696,435 - 26,810,762 (-)	NCBI		Celera
Cytogenetic Map	1	p35.3	NCBI
HuRef	1	26,552,221 - 26,670,901 (-)	NCBI		HuRef
CHM1_1	1	28,412,382 - 28,530,637 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	27,812,178 - 27,930,443 (-)	NCBI		T2T-CHM13v2.0

Eya3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	132,366,303 - 132,452,076 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	132,366,298 - 132,452,076 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	132,639,025 - 132,724,765 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	132,638,987 - 132,724,765 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	132,194,961 - 132,280,678 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	131,911,122 - 131,996,839 (+)	NCBI		MGSCv36	mm8
Celera	4	130,800,983 - 130,886,901 (+)	NCBI		Celera
Cytogenetic Map	4	D2.3	NCBI
cM Map	4	65.68	NCBI

Eya3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	7,150,886 - 7,255,159 (-)	Ensembl
ChiLan1.0	NW_004955452	7,148,762 - 7,273,886 (-)	NCBI	ChiLan1.0	ChiLan1.0

EYA3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	198,763,927 - 198,883,142 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	197,880,844 - 198,000,070 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	27,230,623 - 27,349,355 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	28,270,116 - 28,386,878 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	28,270,116 - 28,386,878 (-)	Ensembl			panPan2	panpan1.1

EYA3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	72,313,412 - 72,417,729 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	72,328,362 - 72,414,058 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	68,891,457 - 68,995,289 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	72,873,523 - 72,977,951 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	72,873,590 - 72,977,551 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	69,700,796 - 69,805,085 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	70,711,314 - 70,815,575 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	71,707,748 - 71,811,729 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Eya3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	46,367,002 - 46,470,598 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	12,191,389 - 12,295,458 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	12,191,391 - 12,295,380 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EYA3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	85,095,409 - 85,185,799 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	85,095,409 - 85,185,856 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	78,635,980 - 78,683,700 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EYA3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	104,720,487 - 104,840,902 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	104,720,482 - 104,840,883 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	11,633,751 - 11,754,343 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Eya3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	11,821,609 - 11,898,144 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624764	11,820,993 - 11,932,183 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Eya3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	25,514,954 - 25,581,855 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Eya3
631 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	423
Count of miRNA genes:	226
Interacting mature miRNAs:	284
Transcripts:	ENSRNOT00000056170
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

AW535236

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	144,872,401 - 144,872,554 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	150,852,946 - 150,853,098	NCBI	Rnor6.0
Rnor_5.0	5	154,520,400 - 154,520,552	UniSTS	Rnor5.0
RGSC_v3.4	5	152,488,211 - 152,488,363	UniSTS	RGSC3.4
Celera	5	143,297,950 - 143,298,102	UniSTS
RH 3.4 Map	5	977.8	UniSTS
Cytogenetic Map	5	q36	UniSTS

AI177315

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	144,929,259 - 144,929,463 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	150,909,799 - 150,910,002	NCBI	Rnor6.0
Rnor_5.0	5	154,577,400 - 154,577,603	UniSTS	Rnor5.0
RGSC_v3.4	5	152,431,307 - 152,431,510	UniSTS	RGSC3.4
Celera	5	143,354,817 - 143,355,022	UniSTS
RH 3.4 Map	5	977.8	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056170 ⟹ ENSRNOP00000053016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	150,137,284 - 150,218,513 (+)	Ensembl
mRatBN7.2 Ensembl	5	144,853,291 - 144,934,518 (+)	Ensembl
Rnor_6.0 Ensembl	5	150,833,819 - 150,913,757 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082945 ⟹ ENSRNOP00000070857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	150,153,150 - 150,218,519 (+)	Ensembl
mRatBN7.2 Ensembl	5	144,869,147 - 144,934,518 (+)	Ensembl
Rnor_6.0 Ensembl	5	150,787,043 - 150,911,822 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097388 ⟹ ENSRNOP00000095246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	150,137,268 - 150,218,513 (+)	Ensembl
mRatBN7.2 Ensembl	5	144,853,291 - 144,934,518 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099304 ⟹ ENSRNOP00000085482

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	150,137,271 - 150,218,513 (+)	Ensembl
mRatBN7.2 Ensembl	5	144,806,577 - 144,934,518 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000148895 ⟹ ENSRNOP00000109307

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	150,137,256 - 150,215,829 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000149938 ⟹ ENSRNOP00000105685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	150,137,284 - 150,218,513 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167995 ⟹ ENSRNOP00000109356

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	150,165,722 - 150,218,852 (+)	Ensembl

RefSeq Acc Id:

NM_001107910 ⟹ NP_001101380

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,137,294 - 150,218,519 (+)	NCBI
mRatBN7.2	5	144,853,291 - 144,934,522 (+)	NCBI
Rnor_6.0	5	150,833,819 - 150,913,757 (+)	NCBI
Rnor_5.0	5	154,501,246 - 154,582,998 (+)	NCBI
RGSC_v3.4	5	152,427,552 - 152,507,813 (-)	RGD
Celera	5	143,279,068 - 143,358,777 (+)	RGD

Sequence:

show sequence

GCCACTCTGTTGGTGCCAGAGTGGGTCCGAAGTGGTCCCATGTTGTGCTTTGGAGTATCTGCAG
CCGTCTGTTTGTGAAGACCGCAGAGACTTGCAGTCCAGTCACATAAGTGTGTGTAAAGAGACAG
CGGTCCTCATGGAAGAAGAGCAAGACCTACCAGAGCGACCGTTTCCATAGCACTGTGTATGCAA
AGCCTACATGTTAGCGAGGGGTGAAAAAGGCCAAGATGCAGGAACCAGGAGAACAAACTTTAAG
TCAAGTAAACAACCCAGACACCAGTGATCAGAAGCCTGAGACCGCCAGCCTTGCGTCAAACCTT
AGCATGTCAGAGGAAATTATGACATGCACCGATTACATCCCTCGCTCATCCAATGATTATACCT
CACAAATGTATTCTGCAAAACCTTATGCACACATCCTCTCGGTTCCTGTTTCGGAAACCACTTA
TCCTGGGCAGACTCAGTACCAGACACTGCAGCAGTCTCAACCCTACGCTGTCTACCCTCAGGCA
ACCCAAACTTATGGACTACCTCCTTTCGCTTCAAGCACAAATGCCAGCCTGATATCCACTTCAT
CTGCAATTGCCAATATTCCAGCAGCAGCCGTGGCCAGCATCTCAAACCAGGACTATCCCACCTA
TACTATTCTTGGACAGAATCAGTACCAGGCCTGCTACCCCAGTTCCAGCTTTGGAGTCACAGGT
CAGACTAACAGTGATACTGAGAATACAGCATTAGCAGCTACAACGTACCAGACGGAGAAGCCTG
GTGCTATGGGACCTGCACCAGCCACACAGAGGCTTCCTTCCGACTCGTCCACAAGCCCACCTTT
GTCCCAGACAACACCAAATAAAGATGCTGATGATCAGGCCAGGAAAAACATGACTGTCAAGAAC
CGAGGCAAGAGGAAAGCTGACGCCAGCTCTTCCCAGGACAGCGAATTAGAACGGGTATTTCTCT
GGGACTTGGATGAAACCATCATCATATTTCATTCCCTTCTTACCGGATCCTATGCTCAGAAGTA
TGGAAAGGACCCAACAGTCGTAATTGGCTCAGGTTTAACAATGGAAGAAATGATTTTTGAAGTG
GCTGATACACATCTATTTTTCAATGACTTAGAAGAGTGTGACCAGGTGCATGTGGAAGATGTGG
CTTCTGATGACAATGGCCAGGATTTGAGCAACTACAGTTTCTCAACAGATGGTTTCAGTGGTTC
AGGAGGCAGCGGGAGCCACGGATCCTCTGTGGGAGTTCAGGGAGGTGTGGACTGGATGAGGAAA
CTGGCCTTTCGCTACCGAAAAGTGAGGGAAATCTATGATAAGCATAAAAGCAACGTTGGTGGCC
TTCTCAGCCCCCAGAGGAAGGAGGCTCTGCAGCGGCTCAGAGCAGAGATCGAAGTGCTGACGGA
CTCCTGGCTAGGAACCGCGCTGAAGTCCTTGCTTCTCATCCAGTCTCGAAAGAATTGTGTGAAT
GTTCTGATCACTACCACCCAGTTGGTTCCAGCCCTGGCCAAGGTTCTCCTGTATGGACTAGGAG
AAATATTTCCTATTGAGAACATCTACAGTGCTACCAAAATCGGTAAGGAGAGCTGCTTTGAGAG
AATCGTTTCGAGATTTGGGAAAAAAGTCACATATGTAGTAATTGGAGATGGACGAGATGAAGAA
ATTGCAGCCAAGCAGCACAACATGCCCTTCTGGAGGATCACAAACCATGGAGATCTGGTGTCCC
TGCACCAGGCTTTAGAGCTCGACTTCCTCTAAGAACTGGAATGTGGGACCTTCCTTCCTTGTGA
GCTTCTTTTTACCTCCGACAGGAGCCAGAAGCCAGAACCCTCTGAGCCCCTTCTCTCCTGTCTG
TCTCTCCATGTCTCAGCGCCCCTCCCCCTCTCCTGCTCTCTCTCCATGGAATGCTGGCGAGCAC
ACAATCAGAACCAACAGCTGCAGCCCACGTCCACTGTACAGCAGGAGGCGCCTGGATAAAGCTG
CAGACCGGCTGCAGCCACTGTGCTTTAATTTTTCAGTTTCCTTTGGGAAAGGAAGAACAAGGAA
AGCTGATGCTCAGGGCACAGCTGTGCTCACACGGACAGACTGGGAGCTGCTCCTGAGCGTGGGG
ATGGAACGTGCGTCCCCTTGAGATCTTCTGTTCTCTTAGTGTAGACTGTCTCCCAGTGATGGGT
ATGTTGTTTTTATAGGTGAGGGTCTGGTCTCTCAAGCAGCCTTCCCCACTTCTCTATGAAGAAA
GCAGTGTGTAAAGTTTCCGTGACAGTAGTAATGGAAATATCTAAAATACCTCCGTGACAGGACC
TCTTCTGGACAGGACCGAGGCTCCAGTGCTCTGCTCTCTAGCGAGGCTCCTTGCCATCTACAGG
GCCCTGGTCACTTACTTTAGACTTTGGCATCTCCCATCTTGTAAGCCTCGGTCTCCTTGGCAAT
CCTACTTCACCTGTAAGCAAATGGCACAACCCTGGAAACAACTTCCACAGACAATAAATCTAAG
CCTTTAGCTTGTAATTCAGAAGCTCTGTCCCAGGAAGCTACCCTGCAAACTGGAGAGAAGGGGC
TTGGACTTCTTAGGAATTCCATCCTTAGTTCCTGAGGTAAGACTTCACCCCGTGCACCTGCAGA
TGCTTCTTCTGCGGTCAGCTTAGTTGTCAGATGCTGGGCACACTTCTGCCCTCACAACCGCCCC
TCTCCATGCAGCTCTGGCCAGCCCCTACCCACTCCATTCAAGTCAGAAAGGCCAGGGGCGGGCT
CTAGCTGCTTCCTTCACCTGCACTTGCATGCGGTGATCCCACCTTGTATTTACACAGATCTGTG
CCTAGGAGTGGAGAGCAGAGAACTAGAATCAAAACCCAGTTTCACATGAAATATCCCACTGCTC
AAATTCCATGCTGAAGTGGGAAACCCGACCAGAAAGACTTTCTTGACTTAAACACTTGAAAATA
GAATCCTGAGCTTAGGTGTAAGAGCACTTCTCAAGCCTGCTCCCCTGCCCCTGCACCCTGGACA
GTTAGGAGGGGAACTGGTCCGAAGTCCCAGCCCTCAAGCCCAGCTGTGTTTTTTGGTTTTATTT
TGGTTTTTGTTTGGGTATTTTGTTTTGGTTTGATTTAGTTTGGTTTTGTTTTTTAAGGCACTAT
CCCTTCAGGACCAATGTCGGTGCCTGCTTAATTGGGTTAAACTTCCCTGAAGTTGAGAATGTGC
AGCCTTGGTCTTCAGGGGGTCTTGAACCAACCCCTAGCTACAATCACTGTCCCCAAAGATACTG
CAGCCCAGAGGCAAAGTTCCTCTTCATGCCAGGCTACCAGACAGTGGCAGAAAGGCTGACACAC
CATCTTCAGAGCTGTTGGACACTTCTGAGTGCTTCTGAGACCAGCAGTTGAGGAAGGAGCTCAG
GAGGCGAGGTTGGTGTCTTGGCCACGCCTTTGGCTTTGTTTTGAGGTATGGGGTTGGAGTAAGG
AGCTGGAGTCTAAGCCAGACCTTCCGAAGCTGTATTTGGCACCACTATCCTAGTCCTGGCCATC
CGTGCTTCCTGGTCCAATAGAGAAAACTCCAGGGTAAGTTTTACTTTAAGTCTCCAACCCTCCC
CCCGTTGCCAGTGTAGTTTCTTGTCCTGGACAATGGCCACCTATTGGTGCTGTGCTTCAGGCTT
ACCAGACTGCCAAGTGGTGACACACCCCTCTGCACACAGGTACCACCACAAACCCTTCAGGGGA
GACTCTGTTCTTAGAACAGGGAATCCCTTTCCTCTTGCCCTGACTGGAGTGGCAAGGAGGTGTT
CTGAGCTGAGTGGCTGTTCCAGCACCAGCAGCCACTCTGACAGGGCAGACAGAGCAGGAGTGCA
TTGGTGTCTCTAGGGACTGCTGGCCTTTGAGCTGCTGACCTTCCCTCCCTCCC

hide sequence

RefSeq Acc Id:

NM_001415864 ⟹ NP_001402793

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,137,294 - 150,218,519 (+)	NCBI
mRatBN7.2	5	144,853,291 - 144,934,522 (+)	NCBI

RefSeq Acc Id:

NM_001415865 ⟹ NP_001402794

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,137,294 - 150,218,519 (+)	NCBI
mRatBN7.2	5	144,853,291 - 144,934,522 (+)	NCBI

RefSeq Acc Id:

XM_006239025 ⟹ XP_006239087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,137,241 - 150,218,855 (+)	NCBI
mRatBN7.2	5	144,853,234 - 144,934,522 (+)	NCBI
Rnor_6.0	5	150,833,754 - 150,915,390 (+)	NCBI
Rnor_5.0	5	154,501,246 - 154,582,998 (+)	NCBI

Sequence:

show sequence

GCCCCAGAAATCTACTTCCGGTTCCTAGGGATGCGCATCCGGGTCACGCTAACGCCGCGGTTTC
CGCCACTCTGTTGGTGCCAGAGTGGGTCCGAAGTGGTCCCATGTTGTGCTTTGGAGTATCTGCA
GCCGTCTGGCTGGTCTGGAACTTTTGGAATTTGCTTTGTTGTTGAAGATGGCATTGAACTCATG
ATCCTCCTGCCTTCTAACATCTGGGATTACAGACAGTTTGTGAAGACCGCAGAGACTTGCAGTC
CAGTCACATAAGTGTGTGTAAAGAGACAGCGGTCCTCATGGAAGAAGAGCAAGACCTACCAGAG
CGACCGGTGAAAAAGGCCAAGATGCAGGAACCAGGAGAACAAACTTTAAGTCAAGTAAACAACC
CAGACACCAGTGATCAGAAGCCTGAGACCGCCAGCCTTGCGTCAAACCTTAGCATGTCAGAGGA
AATTATGACATGCACCGATTACATCCCTCGCTCATCCAATGATTATACCTCACAAATGTATTCT
GCAAAACCTTATGCACACATCCTCTCGGTTCCTGTTTCGGAAACCACTTATCCTGGGCAGACTC
AGTACCAGACACTGCAGCAGTCTCAACCCTACGCTGTCTACCCTCAGGCAACCCAAACTTATGG
ACTACCTCCTTTCGGTGCACTGTGGCCAGGTATGAAACCTGAAAGTGGTTTAATTCAGACTCCA
TCTCCAAGTCAACACAGTGTTCTTACCTGCACTACAGGCTTAACCACAAGCCAGCCAAGCCCAG
CACATTATTCTTACCCCATTCCAGCTTCAAGCACAAATGCCAGCCTGATATCCACTTCATCTGC
AATTGCCAATATTCCAGCAGCAGCCGTGGCCAGCATCTCAAACCAGGACTATCCCACCTATACT
ATTCTTGGACAGAATCAGTACCAGGCCTGCTACCCCAGTTCCAGCTTTGGAGTCACAGGTCAGA
CTAACAGTGATACTGAGAATACAGCATTAGCAGCTACAACGTACCAGACGGAGAAGCCTGGTGC
TATGGGACCTGCACCAGCCACACAGAGGCTTCCTTCCGACTCGTCCACAAGCCCACCTTTGTCC
CAGACAACACCAAATAAAGATGCTGATGATCAGGCCAGGAAAAACATGACTGTCAAGAACCGAG
GCAAGAGGAAAGCTGACGCCAGCTCTTCCCAGGACAGCGAATTAGAACGGGTATTTCTCTGGGA
CTTGGATGAAACCATCATCATATTTCATTCCCTTCTTACCGGATCCTATGCTCAGAAGTATGGA
AAGGACCCAACAGTCGTAATTGGCTCAGGTTTAACAATGGAAGAAATGATTTTTGAAGTGGCTG
ATACACATCTATTTTTCAATGACTTAGAAGAGTGTGACCAGGTGCATGTGGAAGATGTGGCTTC
TGATGACAATGGCCAGGATTTGAGCAACTACAGTTTCTCAACAGATGGTTTCAGTGGTTCAGGA
GGCAGCGGGAGCCACGGATCCTCTGTGGGAGTTCAGGGAGGTGTGGACTGGATGAGGAAACTGG
CCTTTCGCTACCGAAAAGTGAGGGAAATCTATGATAAGCATAAAAGCAACGTTGGTGGCCTTCT
CAGCCCCCAGAGGAAGGAGGCTCTGCAGCGGCTCAGAGCAGAGATCGAAGTGCTGACGGACTCC
TGGCTAGGAACCGCGCTGAAGTCCTTGCTTCTCATCCAGTCTCGAAAGAATTGTGTGAATGTTC
TGATCACTACCACCCAGTTGGTTCCAGCCCTGGCCAAGGTTCTCCTGTATGGACTAGGAGAAAT
ATTTCCTATTGAGAACATCTACAGTGCTACCAAAATCGGTAAGGAGAGCTGCTTTGAGAGAATC
GTTTCGAGATTTGGGAAAAAAGTCACATATGTAGTAATTGGAGATGGACGAGATGAAGAAATTG
CAGCCAAGCAGCACAACATGCCCTTCTGGAGGATCACAAACCATGGAGATCTGGTGTCCCTGCA
CCAGGCTTTAGAGCTCGACTTCCTCTAAGAACTGGAATGTGGGACCTTCCTTCCTTGTGAGCTT
CTTTTTACCTCCGACAGGAGCCAGAAGCCAGAACCCTCTGAGCCCCTTCTCTCCTGTCTGTCTC
TCCATGTCTCAGCGCCCCTCCCCCTCTCCTGCTCTCTCTCCATGGAATGCTGGCGAGCACACAA
TCAGAACCAACAGCTGCAGCCCACGTCCACTGTACAGCAGGAGGCGCCTGGATAAAGCTGCAGA
CCGGCTGCAGCCACTGTGCTTTAATTTTTCAGTTTCCTTTGGGAAAGGAAGAACAAGGAAAGCT
GATGCTCAGGGCACAGCTGTGCTCACACGGACAGACTGGGAGCTGCTCCTGAGCGTGGGGATGG
AACGTGCGTCCCCTTGAGATCTTCTGTTCTCTTAGTGTAGACTGTCTCCCAGTGATGGGTATGT
TGTTTTTATAGGTGAGGGTCTGGTCTCTCAAGCAGCCTTCCCCACTTCTCTATGAAGAAAGCAG
TGTGTAAAGTTTCCGTGACAGTAGTAATGGAAATATCTAAAATACCTCCGTGACAGGACCTCTT
CTGGACAGGACCGAGGCTCCAGTGCTCTGCTCTCTAGCGAGGCTCCTTGCCATCTACAGGGCCC
TGGTCACTTACTTTAGACTTTGGCATCTCCCATCTTGTAAGCCTCGGTCTCCTTGGCAATCCTA
CTTCACCTGTAAGCAAATGGCACAACCCTGGAAACAACTTCCACAGACAATAAATCTAAGCCTT
TAGCTTGTAATTCAGAAGCTCTGTCCCAGGAAGCTACCCTGCAAACTGGAGAGAAGGGGCTTGG
ACTTCTTAGGAATTCCATCCTTAGTTCCTGAGGTAAGACTTCACCCCGTGCACCTGCAGATGCT
TCTTCTGCGGTCAGCTTAGTTGTCAGATGCTGGGCACACTTCTGCCCTCACAACCGCCCCTCTC
CATGCAGCTCTGGCCAGCCCCTACCCACTCCATTCAAGTCAGAAAGGCCAGGGGCGGGCTCTAG
CTGCTTCCTTCACCTGCACTTGCATGCGGTGATCCCACCTTGTATTTACACAGATCTGTGCCTA
GGAGTGGAGAGCAGAGAACTAGAATCAAAACCCAGTTTCACATGAAATATCCCACTGCTCAAAT
TCCATGCTGAAGTGGGAAACCCGACCAGAAAGACTTTCTTGACTTAAACACTTGAAAATAGAAT
CCTGAGCTTAGGTGTAAGAGCACTTCTCAAGCCTGCTCCCCTGCCCCTGCACCCTGGACAGTTA
GGAGGGGAACTGGTCCGAAGTCCCAGCCCTCAAGCCCAGCTGTGTTTTTTGGTTTTATTTTGGT
TTTTGTTTGGGTATTTTGTTTTGGTTTGATTTAGTTTGGTTTTGTTTTTTAAGGCACTATCCCT
TCAGGACCAATGTCGGTGCCTGCTTAATTGGGTTAAACTTCCCTGAAGTTGAGAATGTGCAGCC
TTGGTCTTCAGGGGGTCTTGAACCAACCCCTAGCTACAATCACTGTCCCCAAAGATACTGCAGC
CCAGAGGCAAAGTTCCTCTTCATGCCAGGCTACCAGACAGTGGCAGAAAGGCTGACACACCATC
TTCAGAGCTGTTGGACACTTCTGAGTGCTTCTGAGACCAGCAGTTGAGGAAGGAGCTCAGGAGG
CGAGGTTGGTGTCTTGGCCACGCCTTTGGCTTTGTTTTGAGGTATGGGGTTGGAGTAAGGAGCT
GGAGTCTAAGCCAGACCTTCCGAAGCTGTATTTGGCACCACTATCCTAGTCCTGGCCATCCGTG
CTTCCTGGTCCAATAGAGAAAACTCCAGGGTAAGTTTTACTTTAAGTCTCCAACCCTCCCCCCG
TTGCCAGTGTAGTTTCTTGTCCTGGACAATGGCCACCTATTGGTGCTGTGCTTCAGGCTTACCA
GACTGCCAAGTGGTGACACACCCCTCTGCACACAGGTACCACCACAAACCCTTCAGGGGAGACT
CTGTTCTTAGAACAGGGAATCCCTTTCCTCTTGCCCTGACTGGAGTGGCAAGGAGGTGTTCTGA
GCTGAGTGGCTGTTCCAGCACCAGCAGCCACTCTGACAGGGCAGACAGAGCAGGAGTGCATTGG
TGTCTCTAGGGACTGCTGGCCTTTGAGCTGCTGACCTTCCCTCCCTCCCATAGAGGCTTGGGAA
GGAAAATGAGCGGGCAGCATTAAGAGCTGCTAGTAACAGAAGCAGGCTTGGTGGAGGATAGCGC
CTGCAGCCTGTGCAGAGGTCCAAGGTTTGAGTGCCCACAGGACTCCTCACGACCTCTCACTGCA
GCTCCAGAGGGTTTGGTGCCCTCCTTTGGCCTCTTCAGGCACCAAGCACTTACATGTAAGAAAG
CACTCAAGTATACAATAAAATTTCTTTTAATATTAAAAGCTGTTGGAGGTTAGACCTGAAGGAA
ACTGGGTCCTTTCATCAACATCAGAAGGCAGTCCTTACCGGAAGGACCCCTTGAAGAAATTAGC
TGGTGAGTCCTTTCCCTGCCGGATCCTGTGTTCTGGAAGATTAGTTTGGACATCTCATGGTGAC
AGCTAGTTCTAGGAGAGTCTGTGGAGTTGCAGGAAGGTCCTGGGATACAAGGTGGCTTGACTTC
GAATGTAACAGTGACTGTGCCTTAGCATCACCCTGTCCAGTGCCCCTGGGGCAGCTGGTGATGT
CCGTCCGAGAGAGTGGATACCTGCTCCACAGTTTAGGTGCCTATTTGGGCTTTTGATTTGGGGG
TGTTCTCTTCTCTGCTAGTTGGGTGTCAGAGCTAGTGTCCCAAGAGACTTGGCACAGCTGGCAC
AGCTTGTCTTATGTTTGCCCAAACTCAGCCTTCACAGCTCCAAGTAGAATCTGATTGGCAAACT
GCAACTGGAAGCCCGCGGCGCTTCTAGACCCTGCTTTGAATGGGCGTCACACGACCGACAGGAG
CACCAGGCAAAGCCGGGTGCTGTCCTGGAAGAGTACAGGCTAGCCTCCAAGTGCCAAGCTTGGG
CCTCATTGTTCATCTTCCCCAGGTTGTAGCTGAGGGCCCCTCGAGTAAGCTTGTGCTCCTTGCT
GCTCACCTGGTCAGCAGCTAGAATGACCCAGTTCACTGGAGACGCTAAGTTGGAATTCTGAGCT
TCCCAAATATCTTAACCACAAGAGGGAAAACTCCGCTTGTACCCCAGGCTTTCCGGGGCCGCTT
GCCCTCCTCTTCCGTGAGTGGATTCTAGTGAGCATGGCCCCTGGCTGCCTCCTTACTGAGCAGA
ACCCTCCCAGTTAAGGACCATTTCTACTTGGATCACCACTCTCCCTCTGGACTCTGCCTCTAGC
AGGGAAAGGCAACAGTTGGGTTGGATGTATTTATGTGACTGCGGGCATTTGTGGCTATAGAGTC
CTTGACCATAATGTTATATGTAATGGGAACTATCTTATAAACTTGAAAAAATAAAGTTTTTATT
TTCTATACAGTTTTCTCCTTTGTCTTTTCTAAATATGGTTAGCCCATTTGCCAAGCCATTCAGG
GTCCTAATCAGGGCTTCATTAAGATGTCACCCTTTAAATAACTGAGTCATTCATTTCACACATA
CAAAAAGGGATCATTTGATCAATGTTGGAAAATAAAAAGTTGTAAAGTTTGCAAGAGAAATGTT
TATTTGAATTGTTTCTAAAATACACTGCTTTTTAAGGTATAGAAATGGAATAGATTTCATGAGC
TGTCCATGTGCTAAACTTGACTAAGGAGAAGTCAGTCTGTGCTGAGCATTAAGCTGCAAACCCA
ATAAAACTAATGAACCAA

hide sequence

RefSeq Acc Id:

XM_006239026 ⟹ XP_006239088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,137,293 - 150,218,855 (+)	NCBI
mRatBN7.2	5	144,853,236 - 144,934,522 (+)	NCBI
Rnor_6.0	5	150,833,896 - 150,915,390 (+)	NCBI
Rnor_5.0	5	154,501,246 - 154,582,998 (+)	NCBI

Sequence:

show sequence

CTCCGCCGCGGCCAGGGTGTCAGCACGGTGGCTCGGGTGCAGCCTTCAGGGCCCCAGCTGAAGA
GTTCCTCCCCGGTCGTACTGGACAGTTTGTGAAGACCGCAGAGACTTGCAGTCCAGTCACATAA
GTGTGTGTAAAGAGACAGCGGTCCTCATGGAAGAAGAGCAAGACCTACCAGAGCGACCGGTGAA
AAAGGCCAAGATGCAGGAACCAGGAGAACAAACTTTAAGTCAAGTAAACAACCCAGACACCAGT
GATCAGAAGCCTGAGACCGCCAGCCTTGCGTCAAACCTTAGCATGTCAGAGGAAATTATGACAT
GCACCGATTACATCCCTCGCTCATCCAATGATTATACCTCACAAATGTATTCTGCAAAACCTTA
TGCACACATCCTCTCGGTTCCTGTTTCGGAAACCACTTATCCTGGGCAGACTCAGTACCAGACA
CTGCAGCAGTCTCAACCCTACGCTGTCTACCCTCAGGCAACCCAAACTTATGGACTACCTCCTT
TCGGTGCACTGTGGCCAGGTATGAAACCTGAAAGTGGTTTAATTCAGACTCCATCTCCAAGTCA
ACACAGTGTTCTTACCTGCACTACAGGCTTAACCACAAGCCAGCCAAGCCCAGCACATTATTCT
TACCCCATTCCAGCTTCAAGCACAAATGCCAGCCTGATATCCACTTCATCTGCAATTGCCAATA
TTCCAGCAGCAGCCGTGGCCAGCATCTCAAACCAGGACTATCCCACCTATACTATTCTTGGACA
GAATCAGTACCAGGCCTGCTACCCCAGTTCCAGCTTTGGAGTCACAGGTCAGACTAACAGTGAT
ACTGAGAATACAGCATTAGCAGCTACAACGTACCAGACGGAGAAGCCTGGTGCTATGGGACCTG
CACCAGCCACACAGAGGCTTCCTTCCGACTCGTCCACAAGCCCACCTTTGTCCCAGACAACACC
AAATAAAGATGCTGATGATCAGGCCAGGAAAAACATGACTGTCAAGAACCGAGGCAAGAGGAAA
GCTGACGCCAGCTCTTCCCAGGACAGCGAATTAGAACGGGTATTTCTCTGGGACTTGGATGAAA
CCATCATCATATTTCATTCCCTTCTTACCGGATCCTATGCTCAGAAGTATGGAAAGGACCCAAC
AGTCGTAATTGGCTCAGGTTTAACAATGGAAGAAATGATTTTTGAAGTGGCTGATACACATCTA
TTTTTCAATGACTTAGAAGAGTGTGACCAGGTGCATGTGGAAGATGTGGCTTCTGATGACAATG
GCCAGGATTTGAGCAACTACAGTTTCTCAACAGATGGTTTCAGTGGTTCAGGAGGCAGCGGGAG
CCACGGATCCTCTGTGGGAGTTCAGGGAGGTGTGGACTGGATGAGGAAACTGGCCTTTCGCTAC
CGAAAAGTGAGGGAAATCTATGATAAGCATAAAAGCAACGTTGGTGGCCTTCTCAGCCCCCAGA
GGAAGGAGGCTCTGCAGCGGCTCAGAGCAGAGATCGAAGTGCTGACGGACTCCTGGCTAGGAAC
CGCGCTGAAGTCCTTGCTTCTCATCCAGTCTCGAAAGAATTGTGTGAATGTTCTGATCACTACC
ACCCAGTTGGTTCCAGCCCTGGCCAAGGTTCTCCTGTATGGACTAGGAGAAATATTTCCTATTG
AGAACATCTACAGTGCTACCAAAATCGGTAAGGAGAGCTGCTTTGAGAGAATCGTTTCGAGATT
TGGGAAAAAAGTCACATATGTAGTAATTGGAGATGGACGAGATGAAGAAATTGCAGCCAAGCAG
CACAACATGCCCTTCTGGAGGATCACAAACCATGGAGATCTGGTGTCCCTGCACCAGGCTTTAG
AGCTCGACTTCCTCTAAGAACTGGAATGTGGGACCTTCCTTCCTTGTGAGCTTCTTTTTACCTC
CGACAGGAGCCAGAAGCCAGAACCCTCTGAGCCCCTTCTCTCCTGTCTGTCTCTCCATGTCTCA
GCGCCCCTCCCCCTCTCCTGCTCTCTCTCCATGGAATGCTGGCGAGCACACAATCAGAACCAAC
AGCTGCAGCCCACGTCCACTGTACAGCAGGAGGCGCCTGGATAAAGCTGCAGACCGGCTGCAGC
CACTGTGCTTTAATTTTTCAGTTTCCTTTGGGAAAGGAAGAACAAGGAAAGCTGATGCTCAGGG
CACAGCTGTGCTCACACGGACAGACTGGGAGCTGCTCCTGAGCGTGGGGATGGAACGTGCGTCC
CCTTGAGATCTTCTGTTCTCTTAGTGTAGACTGTCTCCCAGTGATGGGTATGTTGTTTTTATAG
GTGAGGGTCTGGTCTCTCAAGCAGCCTTCCCCACTTCTCTATGAAGAAAGCAGTGTGTAAAGTT
TCCGTGACAGTAGTAATGGAAATATCTAAAATACCTCCGTGACAGGACCTCTTCTGGACAGGAC
CGAGGCTCCAGTGCTCTGCTCTCTAGCGAGGCTCCTTGCCATCTACAGGGCCCTGGTCACTTAC
TTTAGACTTTGGCATCTCCCATCTTGTAAGCCTCGGTCTCCTTGGCAATCCTACTTCACCTGTA
AGCAAATGGCACAACCCTGGAAACAACTTCCACAGACAATAAATCTAAGCCTTTAGCTTGTAAT
TCAGAAGCTCTGTCCCAGGAAGCTACCCTGCAAACTGGAGAGAAGGGGCTTGGACTTCTTAGGA
ATTCCATCCTTAGTTCCTGAGGTAAGACTTCACCCCGTGCACCTGCAGATGCTTCTTCTGCGGT
CAGCTTAGTTGTCAGATGCTGGGCACACTTCTGCCCTCACAACCGCCCCTCTCCATGCAGCTCT
GGCCAGCCCCTACCCACTCCATTCAAGTCAGAAAGGCCAGGGGCGGGCTCTAGCTGCTTCCTTC
ACCTGCACTTGCATGCGGTGATCCCACCTTGTATTTACACAGATCTGTGCCTAGGAGTGGAGAG
CAGAGAACTAGAATCAAAACCCAGTTTCACATGAAATATCCCACTGCTCAAATTCCATGCTGAA
GTGGGAAACCCGACCAGAAAGACTTTCTTGACTTAAACACTTGAAAATAGAATCCTGAGCTTAG
GTGTAAGAGCACTTCTCAAGCCTGCTCCCCTGCCCCTGCACCCTGGACAGTTAGGAGGGGAACT
GGTCCGAAGTCCCAGCCCTCAAGCCCAGCTGTGTTTTTTGGTTTTATTTTGGTTTTTGTTTGGG
TATTTTGTTTTGGTTTGATTTAGTTTGGTTTTGTTTTTTAAGGCACTATCCCTTCAGGACCAAT
GTCGGTGCCTGCTTAATTGGGTTAAACTTCCCTGAAGTTGAGAATGTGCAGCCTTGGTCTTCAG
GGGGTCTTGAACCAACCCCTAGCTACAATCACTGTCCCCAAAGATACTGCAGCCCAGAGGCAAA
GTTCCTCTTCATGCCAGGCTACCAGACAGTGGCAGAAAGGCTGACACACCATCTTCAGAGCTGT
TGGACACTTCTGAGTGCTTCTGAGACCAGCAGTTGAGGAAGGAGCTCAGGAGGCGAGGTTGGTG
TCTTGGCCACGCCTTTGGCTTTGTTTTGAGGTATGGGGTTGGAGTAAGGAGCTGGAGTCTAAGC
CAGACCTTCCGAAGCTGTATTTGGCACCACTATCCTAGTCCTGGCCATCCGTGCTTCCTGGTCC
AATAGAGAAAACTCCAGGGTAAGTTTTACTTTAAGTCTCCAACCCTCCCCCCGTTGCCAGTGTA
GTTTCTTGTCCTGGACAATGGCCACCTATTGGTGCTGTGCTTCAGGCTTACCAGACTGCCAAGT
GGTGACACACCCCTCTGCACACAGGTACCACCACAAACCCTTCAGGGGAGACTCTGTTCTTAGA
ACAGGGAATCCCTTTCCTCTTGCCCTGACTGGAGTGGCAAGGAGGTGTTCTGAGCTGAGTGGCT
GTTCCAGCACCAGCAGCCACTCTGACAGGGCAGACAGAGCAGGAGTGCATTGGTGTCTCTAGGG
ACTGCTGGCCTTTGAGCTGCTGACCTTCCCTCCCTCCCATAGAGGCTTGGGAAGGAAAATGAGC
GGGCAGCATTAAGAGCTGCTAGTAACAGAAGCAGGCTTGGTGGAGGATAGCGCCTGCAGCCTGT
GCAGAGGTCCAAGGTTTGAGTGCCCACAGGACTCCTCACGACCTCTCACTGCAGCTCCAGAGGG
TTTGGTGCCCTCCTTTGGCCTCTTCAGGCACCAAGCACTTACATGTAAGAAAGCACTCAAGTAT
ACAATAAAATTTCTTTTAATATTAAAAGCTGTTGGAGGTTAGACCTGAAGGAAACTGGGTCCTT
TCATCAACATCAGAAGGCAGTCCTTACCGGAAGGACCCCTTGAAGAAATTAGCTGGTGAGTCCT
TTCCCTGCCGGATCCTGTGTTCTGGAAGATTAGTTTGGACATCTCATGGTGACAGCTAGTTCTA
GGAGAGTCTGTGGAGTTGCAGGAAGGTCCTGGGATACAAGGTGGCTTGACTTCGAATGTAACAG
TGACTGTGCCTTAGCATCACCCTGTCCAGTGCCCCTGGGGCAGCTGGTGATGTCCGTCCGAGAG
AGTGGATACCTGCTCCACAGTTTAGGTGCCTATTTGGGCTTTTGATTTGGGGGTGTTCTCTTCT
CTGCTAGTTGGGTGTCAGAGCTAGTGTCCCAAGAGACTTGGCACAGCTGGCACAGCTTGTCTTA
TGTTTGCCCAAACTCAGCCTTCACAGCTCCAAGTAGAATCTGATTGGCAAACTGCAACTGGAAG
CCCGCGGCGCTTCTAGACCCTGCTTTGAATGGGCGTCACACGACCGACAGGAGCACCAGGCAAA
GCCGGGTGCTGTCCTGGAAGAGTACAGGCTAGCCTCCAAGTGCCAAGCTTGGGCCTCATTGTTC
ATCTTCCCCAGGTTGTAGCTGAGGGCCCCTCGAGTAAGCTTGTGCTCCTTGCTGCTCACCTGGT
CAGCAGCTAGAATGACCCAGTTCACTGGAGACGCTAAGTTGGAATTCTGAGCTTCCCAAATATC
TTAACCACAAGAGGGAAAACTCCGCTTGTACCCCAGGCTTTCCGGGGCCGCTTGCCCTCCTCTT
CCGTGAGTGGATTCTAGTGAGCATGGCCCCTGGCTGCCTCCTTACTGAGCAGAACCCTCCCAGT
TAAGGACCATTTCTACTTGGATCACCACTCTCCCTCTGGACTCTGCCTCTAGCAGGGAAAGGCA
ACAGTTGGGTTGGATGTATTTATGTGACTGCGGGCATTTGTGGCTATAGAGTCCTTGACCATAA
TGTTATATGTAATGGGAACTATCTTATAAACTTGAAAAAATAAAGTTTTTATTTTCTATACAGT
TTTCTCCTTTGTCTTTTCTAAATATGGTTAGCCCATTTGCCAAGCCATTCAGGGTCCTAATCAG
GGCTTCATTAAGATGTCACCCTTTAAATAACTGAGTCATTCATTTCACACATACAAAAAGGGAT
CATTTGATCAATGTTGGAAAATAAAAAGTTGTAAAGTTTGCAAGAGAAATGTTTATTTGAATTG
TTTCTAAAATACACTGCTTTTTAAGGTATAGAAATGGAATAGATTTCATGAGCTGTCCATGTGC
TAAACTTGACTAAGGAGAAGTCAGTCTGTGCTGAGCATTAAGCTGCAAACCCAATAAAACTAAT
GAACCAA

hide sequence

RefSeq Acc Id:

XM_006239027 ⟹ XP_006239089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,137,205 - 150,218,855 (+)	NCBI
mRatBN7.2	5	144,853,202 - 144,934,522 (+)	NCBI
Rnor_6.0	5	150,833,756 - 150,915,390 (+)	NCBI
Rnor_5.0	5	154,501,246 - 154,582,998 (+)	NCBI

Sequence:

show sequence

CCCAGAAATCTACTTCCGGTTCCTAGGGATGCGCATCCGGGTCACGCTAACGCCGCGGTTTCCG
CCACTCTGTTGGTGCCAGAGTGGGTCCGAAGTGGTCCCATGTTGTGCTTTGGAGTATCTGCAGC
CGTCTGACAGTTTGTGAAGACCGCAGAGACTTGCAGTCCAGTCACATAAGTGTGTGTAAAGAGA
CAGCGGTCCTCATGGAAGAAGAGCAAGACCTACCAGAGCGACCGGTGAAAAAGGCCAAGATGCA
GGAACCAGGAGAACAAACTTTAAGTCAAGTAAACAACCCAGACACCAGTGATCAGAAGCCTGAG
ACCGCCAGCCTTGCGTCAAACCTTAGCATGTCAGAGGAAATTATGACATGCACCGATTACATCC
CTCGCTCATCCAATGATTATACCTCACAAATGTATTCTGCAAAACCTTATGCACACATCCTCTC
GGTTCCTGTTTCGGAAACCACTTATCCTGGGCAGACTCAGTACCAGACACTGCAGCAGTCTCAA
CCCTACGCTGTCTACCCTCAGGCAACCCAAACTTATGGACTACCTCCTTTCGCTTCAAGCACAA
ATGCCAGCCTGATATCCACTTCATCTGCAATTGCCAATATTCCAGCAGCAGCCGTGGCCAGCAT
CTCAAACCAGGACTATCCCACCTATACTATTCTTGGACAGAATCAGTACCAGGCCTGCTACCCC
AGTTCCAGCTTTGGAGTCACAGGTCAGACTAACAGTGATACTGAGAATACAGCATTAGCAGCTA
CAACGTACCAGACGGAGAAGCCTGGTGCTATGGGACCTGCACCAGCCACACAGAGGCTTCCTTC
CGACTCGTCCACAAGCCCACCTTTGTCCCAGACAACACCAAATAAAGATGCTGATGATCAGGCC
AGGAAAAACATGACTGTCAAGAACCGAGGCAAGAGGAAAGCTGACGCCAGCTCTTCCCAGGACA
GCGAATTAGAACGGGTATTTCTCTGGGACTTGGATGAAACCATCATCATATTTCATTCCCTTCT
TACCGGATCCTATGCTCAGAAGTATGGAAAGGACCCAACAGTCGTAATTGGCTCAGGTTTAACA
ATGGAAGAAATGATTTTTGAAGTGGCTGATACACATCTATTTTTCAATGACTTAGAAGAGTGTG
ACCAGGTGCATGTGGAAGATGTGGCTTCTGATGACAATGGCCAGGATTTGAGCAACTACAGTTT
CTCAACAGATGGTTTCAGTGGTTCAGGAGGCAGCGGGAGCCACGGATCCTCTGTGGGAGTTCAG
GGAGGTGTGGACTGGATGAGGAAACTGGCCTTTCGCTACCGAAAAGTGAGGGAAATCTATGATA
AGCATAAAAGCAACGTTGGTGGCCTTCTCAGCCCCCAGAGGAAGGAGGCTCTGCAGCGGCTCAG
AGCAGAGATCGAAGTGCTGACGGACTCCTGGCTAGGAACCGCGCTGAAGTCCTTGCTTCTCATC
CAGTCTCGAAAGAATTGTGTGAATGTTCTGATCACTACCACCCAGTTGGTTCCAGCCCTGGCCA
AGGTTCTCCTGTATGGACTAGGAGAAATATTTCCTATTGAGAACATCTACAGTGCTACCAAAAT
CGGTAAGGAGAGCTGCTTTGAGAGAATCGTTTCGAGATTTGGGAAAAAAGTCACATATGTAGTA
ATTGGAGATGGACGAGATGAAGAAATTGCAGCCAAGCAGCACAACATGCCCTTCTGGAGGATCA
CAAACCATGGAGATCTGGTGTCCCTGCACCAGGCTTTAGAGCTCGACTTCCTCTAAGAACTGGA
ATGTGGGACCTTCCTTCCTTGTGAGCTTCTTTTTACCTCCGACAGGAGCCAGAAGCCAGAACCC
TCTGAGCCCCTTCTCTCCTGTCTGTCTCTCCATGTCTCAGCGCCCCTCCCCCTCTCCTGCTCTC
TCTCCATGGAATGCTGGCGAGCACACAATCAGAACCAACAGCTGCAGCCCACGTCCACTGTACA
GCAGGAGGCGCCTGGATAAAGCTGCAGACCGGCTGCAGCCACTGTGCTTTAATTTTTCAGTTTC
CTTTGGGAAAGGAAGAACAAGGAAAGCTGATGCTCAGGGCACAGCTGTGCTCACACGGACAGAC
TGGGAGCTGCTCCTGAGCGTGGGGATGGAACGTGCGTCCCCTTGAGATCTTCTGTTCTCTTAGT
GTAGACTGTCTCCCAGTGATGGGTATGTTGTTTTTATAGGTGAGGGTCTGGTCTCTCAAGCAGC
CTTCCCCACTTCTCTATGAAGAAAGCAGTGTGTAAAGTTTCCGTGACAGTAGTAATGGAAATAT
CTAAAATACCTCCGTGACAGGACCTCTTCTGGACAGGACCGAGGCTCCAGTGCTCTGCTCTCTA
GCGAGGCTCCTTGCCATCTACAGGGCCCTGGTCACTTACTTTAGACTTTGGCATCTCCCATCTT
GTAAGCCTCGGTCTCCTTGGCAATCCTACTTCACCTGTAAGCAAATGGCACAACCCTGGAAACA
ACTTCCACAGACAATAAATCTAAGCCTTTAGCTTGTAATTCAGAAGCTCTGTCCCAGGAAGCTA
CCCTGCAAACTGGAGAGAAGGGGCTTGGACTTCTTAGGAATTCCATCCTTAGTTCCTGAGGTAA
GACTTCACCCCGTGCACCTGCAGATGCTTCTTCTGCGGTCAGCTTAGTTGTCAGATGCTGGGCA
CACTTCTGCCCTCACAACCGCCCCTCTCCATGCAGCTCTGGCCAGCCCCTACCCACTCCATTCA
AGTCAGAAAGGCCAGGGGCGGGCTCTAGCTGCTTCCTTCACCTGCACTTGCATGCGGTGATCCC
ACCTTGTATTTACACAGATCTGTGCCTAGGAGTGGAGAGCAGAGAACTAGAATCAAAACCCAGT
TTCACATGAAATATCCCACTGCTCAAATTCCATGCTGAAGTGGGAAACCCGACCAGAAAGACTT
TCTTGACTTAAACACTTGAAAATAGAATCCTGAGCTTAGGTGTAAGAGCACTTCTCAAGCCTGC
TCCCCTGCCCCTGCACCCTGGACAGTTAGGAGGGGAACTGGTCCGAAGTCCCAGCCCTCAAGCC
CAGCTGTGTTTTTTGGTTTTATTTTGGTTTTTGTTTGGGTATTTTGTTTTGGTTTGATTTAGTT
TGGTTTTGTTTTTTAAGGCACTATCCCTTCAGGACCAATGTCGGTGCCTGCTTAATTGGGTTAA
ACTTCCCTGAAGTTGAGAATGTGCAGCCTTGGTCTTCAGGGGGTCTTGAACCAACCCCTAGCTA
CAATCACTGTCCCCAAAGATACTGCAGCCCAGAGGCAAAGTTCCTCTTCATGCCAGGCTACCAG
ACAGTGGCAGAAAGGCTGACACACCATCTTCAGAGCTGTTGGACACTTCTGAGTGCTTCTGAGA
CCAGCAGTTGAGGAAGGAGCTCAGGAGGCGAGGTTGGTGTCTTGGCCACGCCTTTGGCTTTGTT
TTGAGGTATGGGGTTGGAGTAAGGAGCTGGAGTCTAAGCCAGACCTTCCGAAGCTGTATTTGGC
ACCACTATCCTAGTCCTGGCCATCCGTGCTTCCTGGTCCAATAGAGAAAACTCCAGGGTAAGTT
TTACTTTAAGTCTCCAACCCTCCCCCCGTTGCCAGTGTAGTTTCTTGTCCTGGACAATGGCCAC
CTATTGGTGCTGTGCTTCAGGCTTACCAGACTGCCAAGTGGTGACACACCCCTCTGCACACAGG
TACCACCACAAACCCTTCAGGGGAGACTCTGTTCTTAGAACAGGGAATCCCTTTCCTCTTGCCC
TGACTGGAGTGGCAAGGAGGTGTTCTGAGCTGAGTGGCTGTTCCAGCACCAGCAGCCACTCTGA
CAGGGCAGACAGAGCAGGAGTGCATTGGTGTCTCTAGGGACTGCTGGCCTTTGAGCTGCTGACC
TTCCCTCCCTCCCATAGAGGCTTGGGAAGGAAAATGAGCGGGCAGCATTAAGAGCTGCTAGTAA
CAGAAGCAGGCTTGGTGGAGGATAGCGCCTGCAGCCTGTGCAGAGGTCCAAGGTTTGAGTGCCC
ACAGGACTCCTCACGACCTCTCACTGCAGCTCCAGAGGGTTTGGTGCCCTCCTTTGGCCTCTTC
AGGCACCAAGCACTTACATGTAAGAAAGCACTCAAGTATACAATAAAATTTCTTTTAATATTAA
AAGCTGTTGGAGGTTAGACCTGAAGGAAACTGGGTCCTTTCATCAACATCAGAAGGCAGTCCTT
ACCGGAAGGACCCCTTGAAGAAATTAGCTGGTGAGTCCTTTCCCTGCCGGATCCTGTGTTCTGG
AAGATTAGTTTGGACATCTCATGGTGACAGCTAGTTCTAGGAGAGTCTGTGGAGTTGCAGGAAG
GTCCTGGGATACAAGGTGGCTTGACTTCGAATGTAACAGTGACTGTGCCTTAGCATCACCCTGT
CCAGTGCCCCTGGGGCAGCTGGTGATGTCCGTCCGAGAGAGTGGATACCTGCTCCACAGTTTAG
GTGCCTATTTGGGCTTTTGATTTGGGGGTGTTCTCTTCTCTGCTAGTTGGGTGTCAGAGCTAGT
GTCCCAAGAGACTTGGCACAGCTGGCACAGCTTGTCTTATGTTTGCCCAAACTCAGCCTTCACA
GCTCCAAGTAGAATCTGATTGGCAAACTGCAACTGGAAGCCCGCGGCGCTTCTAGACCCTGCTT
TGAATGGGCGTCACACGACCGACAGGAGCACCAGGCAAAGCCGGGTGCTGTCCTGGAAGAGTAC
AGGCTAGCCTCCAAGTGCCAAGCTTGGGCCTCATTGTTCATCTTCCCCAGGTTGTAGCTGAGGG
CCCCTCGAGTAAGCTTGTGCTCCTTGCTGCTCACCTGGTCAGCAGCTAGAATGACCCAGTTCAC
TGGAGACGCTAAGTTGGAATTCTGAGCTTCCCAAATATCTTAACCACAAGAGGGAAAACTCCGC
TTGTACCCCAGGCTTTCCGGGGCCGCTTGCCCTCCTCTTCCGTGAGTGGATTCTAGTGAGCATG
GCCCCTGGCTGCCTCCTTACTGAGCAGAACCCTCCCAGTTAAGGACCATTTCTACTTGGATCAC
CACTCTCCCTCTGGACTCTGCCTCTAGCAGGGAAAGGCAACAGTTGGGTTGGATGTATTTATGT
GACTGCGGGCATTTGTGGCTATAGAGTCCTTGACCATAATGTTATATGTAATGGGAACTATCTT
ATAAACTTGAAAAAATAAAGTTTTTATTTTCTATACAGTTTTCTCCTTTGTCTTTTCTAAATAT
GGTTAGCCCATTTGCCAAGCCATTCAGGGTCCTAATCAGGGCTTCATTAAGATGTCACCCTTTA
AATAACTGAGTCATTCATTTCACACATACAAAAAGGGATCATTTGATCAATGTTGGAAAATAAA
AAGTTGTAAAGTTTGCAAGAGAAATGTTTATTTGAATTGTTTCTAAAATACACTGCTTTTTAAG
GTATAGAAATGGAATAGATTTCATGAGCTGTCCATGTGCTAAACTTGACTAAGGAGAAGTCAGT
CTGTGCTGAGCATTAAGCTGCAAACCCAATAAAACTAATGAACCAA

hide sequence

RefSeq Acc Id:

XM_039109784 ⟹ XP_038965712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,090,535 - 150,218,855 (+)	NCBI
mRatBN7.2	5	144,806,528 - 144,934,522 (+)	NCBI

RefSeq Acc Id:

XM_039109786 ⟹ XP_038965714

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,090,631 - 150,218,855 (+)	NCBI
mRatBN7.2	5	144,806,627 - 144,934,522 (+)	NCBI

RefSeq Acc Id:

XM_039109787 ⟹ XP_038965715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	150,137,240 - 150,218,855 (+)	NCBI
mRatBN7.2	5	144,853,233 - 144,934,522 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101380	(Get FASTA)	NCBI Sequence Viewer
	NP_001402793	(Get FASTA)	NCBI Sequence Viewer
	NP_001402794	(Get FASTA)	NCBI Sequence Viewer
	XP_006239087	(Get FASTA)	NCBI Sequence Viewer
	XP_006239088	(Get FASTA)	NCBI Sequence Viewer
	XP_006239089	(Get FASTA)	NCBI Sequence Viewer
	XP_038965712	(Get FASTA)	NCBI Sequence Viewer
	XP_038965714	(Get FASTA)	NCBI Sequence Viewer
	XP_038965715	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80645	(Get FASTA)	NCBI Sequence Viewer
	EDL80646	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053016
	ENSRNOP00000053016.4
	ENSRNOP00000070857
	ENSRNOP00000070857.2
	ENSRNOP00000085482.2
	ENSRNOP00000095246
	ENSRNOP00000095246.1
	ENSRNOP00000105685.1
	ENSRNOP00000109307
	ENSRNOP00000109307.1
	ENSRNOP00000109356
	ENSRNOP00000109356.1

RefSeq Acc Id:	NP_001101380 ⟸ NM_001107910
- Peptide Label:	isoform 3
- UniProtKB:	D3ZHX6 (UniProtKB/TrEMBL), A6ISU4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQEPGEQTLSQVNNPDTSDQKPETASLASNLSMSEEIMTCTDYIPRSSNDYTSQMYSAKPYAHI LSVPVSETTYPGQTQYQTLQQSQPYAVYPQATQTYGLPPFASSTNASLISTSSAIANIPAAAVA SISNQDYPTYTILGQNQYQACYPSSSFGVTGQTNSDTENTALAATTYQTEKPGAMGPAPATQRL PSDSSTSPPLSQTTPNKDADDQARKNMTVKNRGKRKADASSSQDSELERVFLWDLDETIIIFHS LLTGSYAQKYGKDPTVVIGSGLTMEEMIFEVADTHLFFNDLEECDQVHVEDVASDDNGQDLSNY SFSTDGFSGSGGSGSHGSSVGVQGGVDWMRKLAFRYRKVREIYDKHKSNVGGLLSPQRKEALQR LRAEIEVLTDSWLGTALKSLLLIQSRKNCVNVLITTTQLVPALAKVLLYGLGEIFPIENIYSAT KIGKESCFERIVSRFGKKVTYVVIGDGRDEEIAAKQHNMPFWRITNHGDLVSLHQALELDFL hide sequence

RefSeq Acc Id:	XP_006239087 ⟸ XM_006239025
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AMN9 (UniProtKB/TrEMBL), A0A0G2JZ01 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEEQDLPERPVKKAKMQEPGEQTLSQVNNPDTSDQKPETASLASNLSMSEEIMTCTDYIPRSS NDYTSQMYSAKPYAHILSVPVSETTYPGQTQYQTLQQSQPYAVYPQATQTYGLPPFGALWPGMK PESGLIQTPSPSQHSVLTCTTGLTTSQPSPAHYSYPIPASSTNASLISTSSAIANIPAAAVASI SNQDYPTYTILGQNQYQACYPSSSFGVTGQTNSDTENTALAATTYQTEKPGAMGPAPATQRLPS DSSTSPPLSQTTPNKDADDQARKNMTVKNRGKRKADASSSQDSELERVFLWDLDETIIIFHSLL TGSYAQKYGKDPTVVIGSGLTMEEMIFEVADTHLFFNDLEECDQVHVEDVASDDNGQDLSNYSF STDGFSGSGGSGSHGSSVGVQGGVDWMRKLAFRYRKVREIYDKHKSNVGGLLSPQRKEALQRLR AEIEVLTDSWLGTALKSLLLIQSRKNCVNVLITTTQLVPALAKVLLYGLGEIFPIENIYSATKI GKESCFERIVSRFGKKVTYVVIGDGRDEEIAAKQHNMPFWRITNHGDLVSLHQALELDFL hide sequence

RefSeq Acc Id:	XP_006239089 ⟸ XM_006239027
- Peptide Label:	isoform X3
- UniProtKB:	D3ZHX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEEQDLPERPVKKAKMQEPGEQTLSQVNNPDTSDQKPETASLASNLSMSEEIMTCTDYIPRSS NDYTSQMYSAKPYAHILSVPVSETTYPGQTQYQTLQQSQPYAVYPQATQTYGLPPFASSTNASL ISTSSAIANIPAAAVASISNQDYPTYTILGQNQYQACYPSSSFGVTGQTNSDTENTALAATTYQ TEKPGAMGPAPATQRLPSDSSTSPPLSQTTPNKDADDQARKNMTVKNRGKRKADASSSQDSELE RVFLWDLDETIIIFHSLLTGSYAQKYGKDPTVVIGSGLTMEEMIFEVADTHLFFNDLEECDQVH VEDVASDDNGQDLSNYSFSTDGFSGSGGSGSHGSSVGVQGGVDWMRKLAFRYRKVREIYDKHKS NVGGLLSPQRKEALQRLRAEIEVLTDSWLGTALKSLLLIQSRKNCVNVLITTTQLVPALAKVLL YGLGEIFPIENIYSATKIGKESCFERIVSRFGKKVTYVVIGDGRDEEIAAKQHNMPFWRITNHG DLVSLHQALELDFL hide sequence

RefSeq Acc Id:	XP_006239088 ⟸ XM_006239026
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AMN9 (UniProtKB/TrEMBL), A0A0G2JZ01 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEEQDLPERPVKKAKMQEPGEQTLSQVNNPDTSDQKPETASLASNLSMSEEIMTCTDYIPRSS NDYTSQMYSAKPYAHILSVPVSETTYPGQTQYQTLQQSQPYAVYPQATQTYGLPPFGALWPGMK PESGLIQTPSPSQHSVLTCTTGLTTSQPSPAHYSYPIPASSTNASLISTSSAIANIPAAAVASI SNQDYPTYTILGQNQYQACYPSSSFGVTGQTNSDTENTALAATTYQTEKPGAMGPAPATQRLPS DSSTSPPLSQTTPNKDADDQARKNMTVKNRGKRKADASSSQDSELERVFLWDLDETIIIFHSLL TGSYAQKYGKDPTVVIGSGLTMEEMIFEVADTHLFFNDLEECDQVHVEDVASDDNGQDLSNYSF STDGFSGSGGSGSHGSSVGVQGGVDWMRKLAFRYRKVREIYDKHKSNVGGLLSPQRKEALQRLR AEIEVLTDSWLGTALKSLLLIQSRKNCVNVLITTTQLVPALAKVLLYGLGEIFPIENIYSATKI GKESCFERIVSRFGKKVTYVVIGDGRDEEIAAKQHNMPFWRITNHGDLVSLHQALELDFL hide sequence

Ensembl Acc Id:

ENSRNOP00000070857 ⟸ ENSRNOT00000082945

Ensembl Acc Id:

ENSRNOP00000053016 ⟸ ENSRNOT00000056170

RefSeq Acc Id:	XP_038965712 ⟸ XM_039109784
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JZ01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965714 ⟸ XM_039109786
- Peptide Label:	isoform X3
- UniProtKB:	D3ZHX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965715 ⟸ XM_039109787
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JZ01 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000095246 ⟸ ENSRNOT00000097388

Ensembl Acc Id:

ENSRNOP00000085482 ⟸ ENSRNOT00000099304

RefSeq Acc Id:	NP_001402793 ⟸ NM_001415864
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2JZ01 (UniProtKB/TrEMBL), A0A8I6AMN9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001402794 ⟸ NM_001415865
- Peptide Label:	isoform 2
- UniProtKB:	D3ZHX6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000105685 ⟸ ENSRNOT00000149938

Ensembl Acc Id:

ENSRNOP00000109307 ⟸ ENSRNOT00000148895

Ensembl Acc Id:

ENSRNOP00000109356 ⟸ ENSRNOT00000167995

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JZ01-F1-model_v2	AlphaFold	A0A0G2JZ01	1-607	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694100

Promoter ID:

EPDNEW_R4625

Type:

initiation region

Name:

Eya3_1

Description:

EYA transcriptional coactivator and phosphatase 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	150,833,822 - 150,833,882	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309932	AgrOrtholog
BioCyc Gene	G2FUF-39678	BioCyc
Ensembl Genes	ENSRNOG00000010396	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000056170	ENTREZGENE
	ENSRNOT00000056170.4	UniProtKB/TrEMBL
	ENSRNOT00000082945	ENTREZGENE
	ENSRNOT00000082945.3	UniProtKB/TrEMBL
	ENSRNOT00000097388	ENTREZGENE
	ENSRNOT00000097388.2	UniProtKB/TrEMBL
	ENSRNOT00000099304.2	UniProtKB/TrEMBL
	ENSRNOT00000148895	ENTREZGENE
	ENSRNOT00000148895.1	UniProtKB/TrEMBL
	ENSRNOT00000149938.1	UniProtKB/TrEMBL
	ENSRNOT00000167995	ENTREZGENE
	ENSRNOT00000167995.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.12350	UniProtKB/TrEMBL
InterPro	EYA	UniProtKB/TrEMBL
	EYA_dom_metazoan	UniProtKB/TrEMBL
	EYA_dom_sf	UniProtKB/TrEMBL
	EYA_fam	UniProtKB/TrEMBL
	HAD-like_sf	UniProtKB/TrEMBL
KEGG Report	rno:313027	UniProtKB/TrEMBL
NCBI Gene	313027	ENTREZGENE
PANTHER	PTHR10190	UniProtKB/TrEMBL
	PTHR10190:SF5	UniProtKB/TrEMBL
Pfam	Hydrolase	UniProtKB/TrEMBL
PhenoGen	Eya3	PhenoGen
RatGTEx	ENSRNOG00000010396	RatGTEx
Superfamily-SCOP	SSF56784	UniProtKB/TrEMBL
UniProt	A0A0G2JZ01	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A077_RAT	UniProtKB/TrEMBL
	A0A8I6AMN9	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LF17_RAT	UniProtKB/TrEMBL
	A0ABK0LR96_RAT	UniProtKB/TrEMBL
	A0ABK0M3Q1_RAT	UniProtKB/TrEMBL
	A6ISU4	ENTREZGENE, UniProtKB/TrEMBL
	D3ZHX6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-06-25	Eya3	EYA transcriptional coactivator and phosphatase 3	Eya3	eyes absent homolog 3 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-09	Eya3	eyes absent homolog 3 (Drosophila)	Eya3	eyes absent 3 homolog (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Eya3	eyes absent 3 homolog (Drosophila)	Eya3_predicted	eyes absent 3 homolog (Drosophila) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Eya3_predicted	eyes absent 3 homolog (Drosophila) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations