Tcea1 (transcription elongation factor A1) - Rat Genome Database

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Gene: Tcea1 (transcription elongation factor A1) Rattus norvegicus
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Symbol: Tcea1
Name: transcription elongation factor A1
RGD ID: 1309880
Description: Predicted to enable transcription elongation factor activity. Predicted to be involved in transcription elongation by RNA polymerase II. Predicted to act upstream of or within erythrocyte differentiation and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of transcription factor TFIID complex. Predicted to be active in nucleus. Orthologous to human TCEA1 (transcription elongation factor A1); PARTICIPATES IN RNA polymerase II transcription elongation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GTF2S; LOC362479; MGC116288; SII; TCEA; TF2S; TFIIS; transcription elongation factor A (SII) 1; transcription elongation factor A protein 1; transcription elongation factor S-II protein 1; transcription factor IIS
RGD Orthologs
Human
Mouse
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Tcea1l1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8519,414,351 - 19,466,629 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl519,429,261 - 19,466,504 (-)EnsemblGRCr8
GRCr8 Ensembl1512,831,339 - 12,834,156 (+)EnsemblGRCr8
mRatBN7.2514,631,454 - 14,668,769 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl514,631,454 - 14,668,745 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1510,400,829 - 10,402,942 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx516,825,171 - 16,862,994 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01513,439,353 - 13,441,754 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0518,159,843 - 18,197,667 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd519,407,461 - 19,445,129 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive520,922,386 - 20,960,055 (-)NCBILyon_Normotensive
Lyon_Hypertensive520,285,305 - 20,322,974 (-)NCBILyon_Hypertensive
F344_StmMcwi514,072,305 - 14,109,959 (-)NCBIF344_StmMcwi
Rnor_6.0514,511,183 - 14,548,494 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl514,511,183 - 14,548,429 (-)Ensemblrn6Rnor6.0
Rnor_5.0519,293,482 - 19,330,800 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4514,834,045 - 14,871,291 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera514,002,673 - 14,039,908 (-)NCBICelera
RGSC_v3.1514,834,044 - 14,871,291 (-)NCBI
Cytogenetic Map5q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Comparative TFIIS-mediated transcript cleavage by mammalian RNA polymerase II arrested at a lesion in different transcription systems. Kalogeraki VS, etal., DNA Repair (Amst). 2005 Sep 28;4(10):1075-87.
3. Control of transcriptional elongation. Kwak H and Lis JT, Annu Rev Genet. 2013;47:483-508. doi: 10.1146/annurev-genet-110711-155440. Epub 2013 Sep 11.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:12761297   PMID:12943681   PMID:15489334   PMID:16581793   PMID:16854843   PMID:27193682  


Genomics

Comparative Map Data
Tcea1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8519,414,351 - 19,466,629 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl519,429,261 - 19,466,504 (-)EnsemblGRCr8
GRCr8 Ensembl1512,831,339 - 12,834,156 (+)EnsemblGRCr8
mRatBN7.2514,631,454 - 14,668,769 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl514,631,454 - 14,668,745 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1510,400,829 - 10,402,942 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx516,825,171 - 16,862,994 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01513,439,353 - 13,441,754 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0518,159,843 - 18,197,667 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd519,407,461 - 19,445,129 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive520,922,386 - 20,960,055 (-)NCBILyon_Normotensive
Lyon_Hypertensive520,285,305 - 20,322,974 (-)NCBILyon_Hypertensive
F344_StmMcwi514,072,305 - 14,109,959 (-)NCBIF344_StmMcwi
Rnor_6.0514,511,183 - 14,548,494 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl514,511,183 - 14,548,429 (-)Ensemblrn6Rnor6.0
Rnor_5.0519,293,482 - 19,330,800 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4514,834,045 - 14,871,291 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera514,002,673 - 14,039,908 (-)NCBICelera
RGSC_v3.1514,834,044 - 14,871,291 (-)NCBI
Cytogenetic Map5q12NCBI
TCEA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38853,966,556 - 54,022,448 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl853,966,552 - 54,022,448 (-)Ensemblhg38GRCh38
GRCh37854,879,116 - 54,935,008 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36855,041,669 - 55,097,561 (-)NCBIBuild 36Build 36hg18NCBI36
Celera850,869,815 - 50,924,590 (-)NCBICelera
Cytogenetic Map8q11.23NCBI
HuRef850,347,344 - 50,402,986 (-)NCBIHuRef
CHM1_1854,930,631 - 54,986,634 (-)NCBICHM1_1
T2T-CHM13v2.0854,343,951 - 54,399,849 (-)NCBIT2T-CHM13v2.0
Tcea1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914,927,917 - 4,968,132 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14,928,037 - 4,968,132 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3814,857,694 - 4,897,909 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14,857,814 - 4,897,909 (+)Ensemblmm10GRCm38
MGSCv3714,847,775 - 4,887,990 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3614,847,896 - 4,887,986 (+)NCBIMGSCv36mm8
Celera14,869,075 - 4,909,317 (+)NCBICelera
Cytogenetic Map1A1NCBI
cM Map11.79NCBI
TCEA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl477,109,594 - 77,138,320 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1477,109,555 - 77,138,324 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2484,179,838 - 84,208,587 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TCEA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1850,048,771 - 50,104,189 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl850,048,474 - 50,104,130 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603991,833,826 - 91,890,759 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcea1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247351,637,465 - 1,704,154 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247351,637,453 - 1,700,839 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tcea1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11140,221,586 - 140,258,669 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tcea1
378 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:436
Count of miRNA genes:243
Interacting mature miRNAs:279
Transcripts:ENSRNOT00000010893
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)51373115343590997Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5862723052665523Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51460607859606078Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51757663362576633Rat
1578774Tcas8Tongue tumor susceptibility QTL 83.47tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)51570745160707451Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5692228237468560Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51748608062486080Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)51297048025683802Rat
2303577Gluco47Glucose level QTL 473blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51652001961520019Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)51748608062486080Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5862723053627230Rat

Markers in Region
RH140518  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21510,403,143 - 10,403,336 (+)MAPPERmRatBN7.2
mRatBN7.2514,631,582 - 14,631,725 (+)MAPPERmRatBN7.2
Rnor_6.0514,511,312 - 14,511,454NCBIRnor6.0
Rnor_6.01511,652,013 - 11,652,205NCBIRnor6.0
Rnor_5.01515,690,726 - 15,690,918UniSTSRnor5.0
Rnor_5.0519,293,611 - 19,293,753UniSTSRnor5.0
RGSC_v3.4514,834,174 - 14,834,316UniSTSRGSC3.4
RGSC_v3.41511,881,548 - 11,881,740UniSTSRGSC3.4
Celera1510,413,518 - 10,413,710UniSTS
Celera514,002,802 - 14,002,944UniSTS
Cytogenetic Map5q12UniSTS
Cytogenetic Map15p16UniSTS
RH140111  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2514,648,621 - 14,648,824 (+)MAPPERmRatBN7.2
Rnor_6.0514,528,350 - 14,528,552NCBIRnor6.0
Rnor_5.0519,310,650 - 19,310,852UniSTSRnor5.0
RGSC_v3.4514,851,212 - 14,851,414UniSTSRGSC3.4
Celera514,019,841 - 14,020,043UniSTS
Cytogenetic Map5q12UniSTS
RH141473  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21510,402,454 - 10,402,604 (+)MAPPERmRatBN7.2
mRatBN7.2514,632,264 - 14,632,414 (-)MAPPERmRatBN7.2
mRatBN7.2514,632,264 - 14,632,414 (+)MAPPERmRatBN7.2
mRatBN7.21510,402,454 - 10,402,604 (-)MAPPERmRatBN7.2
Rnor_6.01511,651,324 - 11,651,473NCBIRnor6.0
Rnor_6.0514,511,994 - 14,512,143NCBIRnor6.0
Rnor_5.0519,294,293 - 19,294,442UniSTSRnor5.0
Rnor_5.01515,690,037 - 15,690,186UniSTSRnor5.0
RGSC_v3.4514,834,856 - 14,835,005UniSTSRGSC3.4
RGSC_v3.41511,880,859 - 11,881,008UniSTSRGSC3.4
Celera1510,412,829 - 10,412,978UniSTS
Celera514,003,484 - 14,003,633UniSTS
Cytogenetic Map15p16UniSTS
Cytogenetic Map5q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000010893   ⟹   ENSRNOP00000010893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl519,429,261 - 19,466,504 (-)Ensembl
mRatBN7.2 Ensembl514,631,457 - 14,668,745 (-)Ensembl
Rnor_6.0 Ensembl514,511,183 - 14,548,429 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104892   ⟹   ENSRNOP00000084958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl519,429,625 - 19,466,504 (-)Ensembl
mRatBN7.2 Ensembl514,631,454 - 14,668,703 (-)Ensembl
RefSeq Acc Id: NM_001025735   ⟹   NP_001020906
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,429,257 - 19,466,504 (-)NCBI
mRatBN7.2514,631,454 - 14,668,704 (-)NCBI
Dahl_SR_JrHsd519,407,461 - 19,445,129 (-)NCBI
Lyon_Normotensive520,922,386 - 20,960,055 (-)NCBI
Lyon_Hypertensive520,285,305 - 20,322,974 (-)NCBI
F344_StmMcwi514,072,305 - 14,109,959 (-)NCBI
Rnor_6.0514,511,183 - 14,548,429 (-)NCBI
Rnor_5.0519,293,482 - 19,330,800 (-)NCBI
RGSC_v3.4514,834,045 - 14,871,291 (-)RGD
Celera514,002,673 - 14,039,908 (-)RGD
Sequence:
RefSeq Acc Id: XM_006237816   ⟹   XP_006237878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,429,257 - 19,466,629 (-)NCBI
mRatBN7.2514,631,454 - 14,668,769 (-)NCBI
Rnor_6.0514,511,183 - 14,548,494 (-)NCBI
Rnor_5.0519,293,482 - 19,330,800 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110212   ⟹   XP_038966140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,429,257 - 19,466,126 (-)NCBI
mRatBN7.2514,631,454 - 14,668,212 (-)NCBI
RefSeq Acc Id: XM_039110213   ⟹   XP_038966141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,429,257 - 19,466,124 (-)NCBI
mRatBN7.2514,631,454 - 14,668,215 (-)NCBI
RefSeq Acc Id: XM_063287894   ⟹   XP_063143964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,414,351 - 19,466,629 (-)NCBI
RefSeq Acc Id: XM_063287895   ⟹   XP_063143965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,429,257 - 19,466,629 (-)NCBI
RefSeq Acc Id: XM_063287896   ⟹   XP_063143966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,429,257 - 19,466,500 (-)NCBI
RefSeq Acc Id: XM_063287897   ⟹   XP_063143967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,429,257 - 19,466,343 (-)NCBI
RefSeq Acc Id: XR_010066407
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,434,953 - 19,466,629 (-)NCBI
RefSeq Acc Id: NP_001020906   ⟸   NM_001025735
- UniProtKB: Q4KLL0 (UniProtKB/Swiss-Prot),   A6K054 (UniProtKB/TrEMBL),   A0A8L2Q4Y0 (UniProtKB/TrEMBL),   A6JFJ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237878   ⟸   XM_006237816
- Peptide Label: isoform X1
- UniProtKB: Q4KLL0 (UniProtKB/Swiss-Prot),   A6K054 (UniProtKB/TrEMBL),   A0A8L2Q4Y0 (UniProtKB/TrEMBL),   A6JFJ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000010893   ⟸   ENSRNOT00000010893
RefSeq Acc Id: XP_038966141   ⟸   XM_039110213
- Peptide Label: isoform X3
- UniProtKB: A0A8L2Q4Y0 (UniProtKB/TrEMBL),   A6JFJ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966140   ⟸   XM_039110212
- Peptide Label: isoform X3
- UniProtKB: A0A8L2Q4Y0 (UniProtKB/TrEMBL),   A6JFJ2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084958   ⟸   ENSRNOT00000104892
RefSeq Acc Id: XP_063143964   ⟸   XM_063287894
- Peptide Label: isoform X1
- UniProtKB: Q4KLL0 (UniProtKB/Swiss-Prot),   A6K054 (UniProtKB/TrEMBL),   A0A8L2Q4Y0 (UniProtKB/TrEMBL),   A6JFJ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143965   ⟸   XM_063287895
- Peptide Label: isoform X2
- UniProtKB: A0A8L2Q4Y0 (UniProtKB/TrEMBL),   A6JFJ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143966   ⟸   XM_063287896
- Peptide Label: isoform X3
- UniProtKB: A0A8L2Q4Y0 (UniProtKB/TrEMBL),   A6JFJ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143967   ⟸   XM_063287897
- Peptide Label: isoform X3
- UniProtKB: A0A8L2Q4Y0 (UniProtKB/TrEMBL),   A6JFJ2 (UniProtKB/TrEMBL)
Protein Domains
TFIIS central   TFIIS N-terminal   TFIIS-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KLL0-F1-model_v2 AlphaFold Q4KLL0 1-301 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693542
Promoter ID:EPDNEW_R4067
Type:multiple initiation site
Name:LOC498453_1
Description:similar to transcription elongation factor A 1 isoform 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0514,548,468 - 14,548,528EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309880 AgrOrtholog
BioCyc Gene G2FUF-42153 BioCyc
Ensembl Genes ENSRNOG00000005869 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000022323 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000007696.5 UniProtKB/Swiss-Prot
  ENSRNOT00000010893 ENTREZGENE
  ENSRNOT00000104892.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.472.30 UniProtKB/Swiss-Prot
  1.20.930.10 UniProtKB/Swiss-Prot
  2.20.25.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7460791 IMAGE-MGC_LOAD
InterPro TF_IIS-typ UniProtKB/Swiss-Prot
  TFIIS/CRSP70_N_sub UniProtKB/Swiss-Prot
  TFIIS/LEDGF_dom_sf UniProtKB/Swiss-Prot
  TFIIS_cen_dom UniProtKB/Swiss-Prot
  TFIIS_cen_dom_sf UniProtKB/Swiss-Prot
  TFIIS_N UniProtKB/Swiss-Prot
  TFSII UniProtKB/Swiss-Prot
  Znf_TFIIS UniProtKB/Swiss-Prot
KEGG Report rno:362479 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116288 IMAGE-MGC_LOAD
NCBI Gene 362479 ENTREZGENE
PANTHER TRANSCRIPTION ELONGATION FACTOR A PROTEIN 1 UniProtKB/Swiss-Prot
  TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
Pfam Med26 UniProtKB/Swiss-Prot
  TFIIS_C UniProtKB/Swiss-Prot
  TFIIS_M UniProtKB/Swiss-Prot
PhenoGen Tcea1 PhenoGen
PIRSF TF_IIS UniProtKB/Swiss-Prot
PROSITE TFIIS_CENTRAL UniProtKB/Swiss-Prot
  TFIIS_N UniProtKB/Swiss-Prot
  ZF_TFIIS_1 UniProtKB/Swiss-Prot
  ZF_TFIIS_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000005869 RatGTEx
  ENSRNOG00000022323 RatGTEx
SMART TFS2M UniProtKB/Swiss-Prot
  TFS2N UniProtKB/Swiss-Prot
  ZnF_C2C2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46942 UniProtKB/Swiss-Prot
  SSF47676 UniProtKB/Swiss-Prot
  Zinc beta-ribbon UniProtKB/Swiss-Prot
UniProt A0A8L2Q4Y0 ENTREZGENE, UniProtKB/TrEMBL
  A6JFJ2 ENTREZGENE, UniProtKB/TrEMBL
  A6K054 ENTREZGENE, UniProtKB/TrEMBL
  Q4KLL0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-19 Tcea1  transcription elongation factor A1  Tcea1  transcription elongation factor A (SII) 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Tcea1  transcription elongation factor A (SII) 1  Tcea1_predicted  transcription elongation factor A (SII) 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Tcea1_predicted  transcription elongation factor A (SII) 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED