Bicd1 (BICD cargo adaptor 1) - Rat Genome Database

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Gene: Bicd1 (BICD cargo adaptor 1) Rattus norvegicus
Analyze
Symbol: Bicd1
Name: BICD cargo adaptor 1
RGD ID: 1309444
Description: Predicted to enable several functions, including dynactin binding activity; dynein complex binding activity; and enzyme binding activity. Predicted to be involved in several processes, including minus-end-directed organelle transport along microtubule; positive regulation of protein localization to centrosome; and stress granule assembly. Predicted to be located in several cellular components, including microtubule cytoskeleton; perinuclear region of cytoplasm; and trans-Golgi network. Predicted to be active in Golgi apparatus and cytosol. Orthologous to human BICD1 (BICD cargo adaptor 1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: bicaudal D homolog 1; bicaudal D homolog 1 (Drosophila); LOC362466
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84184,208,891 - 184,362,840 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4184,210,363 - 184,357,391 (+)EnsemblGRCr8
mRatBN7.24182,479,071 - 182,631,504 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,479,071 - 182,627,434 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4188,774,051 - 188,923,365 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04184,558,582 - 184,707,889 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04183,179,094 - 183,328,421 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04184,018,845 - 184,167,628 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4184,019,087 - 184,165,540 (+)Ensemblrn6Rnor6.0
Rnor_5.04248,136,721 - 248,287,045 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44186,922,060 - 187,069,288 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4170,945,624 - 171,092,463 (+)NCBICelera
RGSC_v3.14187,167,607 - 187,313,324 (+)NCBI
Cytogenetic Map4q44NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bucladesine  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
carmustine  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
crocidolite asbestos  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (EXP)
isoprenaline  (ISO)
maneb  (ISO)
medroxyprogesterone acetate  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
phenylmercury acetate  (ISO)
progesterone  (ISO)
pyridaben  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium dodecyl sulfate  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zearalenone  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. A novel protease-activated receptor-1 interactor, Bicaudal D1, regulates G protein signaling and internalization. Swift S, etal., J Biol Chem. 2010 Apr 9;285(15):11402-10. doi: 10.1074/jbc.M110.105403. Epub 2010 Feb 17.
Additional References at PubMed
PMID:12447383   PMID:17139249   PMID:17562788   PMID:19825938   PMID:20089649  


Genomics

Comparative Map Data
Bicd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84184,208,891 - 184,362,840 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4184,210,363 - 184,357,391 (+)EnsemblGRCr8
mRatBN7.24182,479,071 - 182,631,504 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,479,071 - 182,627,434 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4188,774,051 - 188,923,365 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04184,558,582 - 184,707,889 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04183,179,094 - 183,328,421 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04184,018,845 - 184,167,628 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4184,019,087 - 184,165,540 (+)Ensemblrn6Rnor6.0
Rnor_5.04248,136,721 - 248,287,045 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44186,922,060 - 187,069,288 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4170,945,624 - 171,092,463 (+)NCBICelera
RGSC_v3.14187,167,607 - 187,313,324 (+)NCBI
Cytogenetic Map4q44NCBI
BICD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381232,106,847 - 32,383,633 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1232,106,817 - 32,383,633 (+)Ensemblhg38GRCh38
GRCh371232,259,781 - 32,536,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361232,151,452 - 32,422,408 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341232,151,451 - 32,422,408NCBI
Celera1212,081,147 - 12,351,535 (+)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1232,011,771 - 32,283,413 (+)NCBIHuRef
CHM1_11232,226,441 - 32,497,738 (+)NCBICHM1_1
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBIT2T-CHM13v2.0
Bicd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396149,310,322 - 149,464,827 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6149,310,384 - 149,464,827 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386149,408,824 - 149,563,329 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6149,408,886 - 149,563,329 (+)Ensemblmm10GRCm38
MGSCv376149,357,408 - 149,507,379 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366149,366,236 - 149,514,781 (+)NCBIMGSCv36mm8
Celera6152,443,346 - 152,592,893 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.94NCBI
Bicd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555053,336,803 - 3,544,752 (-)Ensembl
ChiLan1.0NW_0049555053,330,933 - 3,544,752 (-)NCBIChiLan1.0ChiLan1.0
BICD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21064,367,894 - 64,648,099 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11264,364,289 - 64,643,823 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01253,838,986 - 54,118,340 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11256,437,516 - 56,713,901 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1256,443,504 - 56,713,377 (-)EnsemblpanPan2panpan1.1
BICD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12716,478,323 - 16,618,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2716,484,121 - 16,612,044 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2729,714,601 - 29,945,732 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02716,657,712 - 16,883,302 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2716,661,021 - 16,883,775 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12716,468,859 - 16,694,442 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02716,502,772 - 16,728,044 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02729,869,159 - 30,094,880 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bicd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494577,059,403 - 77,293,473 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366073,895,634 - 4,126,880 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366073,893,350 - 4,126,813 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl541,897,382 - 42,143,620 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1541,897,611 - 42,143,668 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2545,092,750 - 45,301,141 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BICD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11131,549,002 - 31,813,498 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1131,549,264 - 31,811,272 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660693,097,937 - 3,373,654 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bicd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247783,762,629 - 3,986,606 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247783,756,683 - 3,986,741 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Bicd1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v167,127,692 - 7,268,064 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:141
Count of miRNA genes:91
Interacting mature miRNAs:118
Transcripts:ENSRNOT00000055435
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat

Markers in Region
D2Mgh14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2243,154,566 - 43,154,682 (+)MAPPERmRatBN7.2
mRatBN7.24182,530,041 - 182,530,134 (+)MAPPERmRatBN7.2
Rnor_6.0243,133,491 - 43,133,606NCBIRnor6.0
Rnor_6.04184,069,208 - 184,069,300NCBIRnor6.0
Rnor_5.04248,187,598 - 248,187,690UniSTSRnor5.0
Rnor_5.0262,179,177 - 62,179,292UniSTSRnor5.0
RGSC_v3.4242,866,227 - 42,866,342UniSTSRGSC3.4
RGSC_v3.44186,973,245 - 186,973,337UniSTSRGSC3.4
RGSC_v3.4242,866,226 - 42,866,342RGDRGSC3.4
Celera238,940,119 - 38,940,234UniSTS
Celera4170,996,419 - 170,996,511UniSTS
RGSC_v3.14187,218,368 - 187,218,461RGD
RH 2.0 Map2267.1RGD
SHRSP x BN Map218.4498RGD
Cytogenetic Map4q44UniSTS
AI325948  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24155,673,580 - 155,673,688 (+)MAPPERmRatBN7.2
mRatBN7.24182,555,768 - 182,555,875 (+)MAPPERmRatBN7.2
Rnor_6.04184,095,067 - 184,095,173NCBIRnor6.0
Rnor_6.04155,259,520 - 155,259,627NCBIRnor6.0
Rnor_5.04248,213,457 - 248,213,563UniSTSRnor5.0
Rnor_5.04222,284,826 - 222,284,933UniSTSRnor5.0
RGSC_v3.44158,904,807 - 158,904,914UniSTSRGSC3.4
RGSC_v3.44186,999,003 - 186,999,109UniSTSRGSC3.4
Celera4171,022,176 - 171,022,282UniSTS
Celera4144,494,579 - 144,494,686UniSTS
Cytogenetic Map4q44UniSTS
Cytogenetic Map4q42UniSTS
BI303473  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24182,509,242 - 182,509,445 (+)MAPPERmRatBN7.2
Rnor_6.04184,048,978 - 184,049,180NCBIRnor6.0
Rnor_5.04248,167,368 - 248,167,570UniSTSRnor5.0
RGSC_v3.44186,952,447 - 186,952,649UniSTSRGSC3.4
Celera4170,975,618 - 170,975,820UniSTS
RH 3.4 Map41090.2UniSTS
Cytogenetic Map4q44UniSTS
UniSTS:225109  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24182,555,766 - 182,555,875 (+)MAPPERmRatBN7.2
mRatBN7.24155,673,578 - 155,673,688 (+)MAPPERmRatBN7.2
Rnor_6.04155,259,518 - 155,259,627NCBIRnor6.0
Rnor_6.04184,095,065 - 184,095,173NCBIRnor6.0
Rnor_5.04248,213,455 - 248,213,563UniSTSRnor5.0
Rnor_5.04222,284,824 - 222,284,933UniSTSRnor5.0
RGSC_v3.44158,904,805 - 158,904,914UniSTSRGSC3.4
RGSC_v3.44186,999,001 - 186,999,109UniSTSRGSC3.4
Celera4171,022,174 - 171,022,282UniSTS
Celera4144,494,577 - 144,494,686UniSTS
Cytogenetic Map4q44UniSTS
Cytogenetic Map4q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 67 156 88 87 56 50 56 6 310 149 11 135 81 91 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000055435   ⟹   ENSRNOP00000052303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4184,210,409 - 184,357,390 (+)Ensembl
mRatBN7.2 Ensembl4182,479,071 - 182,626,054 (+)Ensembl
Rnor_6.0 Ensembl4184,019,087 - 184,165,540 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094810   ⟹   ENSRNOP00000078249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4184,210,409 - 184,357,390 (+)Ensembl
mRatBN7.2 Ensembl4182,479,071 - 182,626,054 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116633   ⟹   ENSRNOP00000085568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4184,210,363 - 184,357,303 (+)Ensembl
mRatBN7.2 Ensembl4182,479,181 - 182,627,434 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000140676   ⟹   ENSRNOP00000107545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4184,210,461 - 184,357,391 (+)Ensembl
RefSeq Acc Id: NM_001108653   ⟹   NP_001102123
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,210,409 - 184,357,390 (+)NCBI
mRatBN7.24182,479,071 - 182,626,054 (+)NCBI
Rnor_6.04184,019,087 - 184,165,540 (+)NCBI
Rnor_5.04248,136,721 - 248,287,045 (+)NCBI
RGSC_v3.44186,922,060 - 187,069,288 (+)RGD
Celera4170,945,624 - 171,092,463 (+)RGD
Sequence:
RefSeq Acc Id: XM_006237703   ⟹   XP_006237765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,208,891 - 184,362,840 (+)NCBI
mRatBN7.24182,479,080 - 182,631,504 (+)NCBI
Rnor_6.04184,018,845 - 184,167,628 (+)NCBI
Rnor_5.04248,136,721 - 248,287,045 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006237705   ⟹   XP_006237767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,208,891 - 184,320,247 (+)NCBI
mRatBN7.24182,479,498 - 182,588,921 (+)NCBI
Rnor_6.04184,018,851 - 184,128,184 (+)NCBI
Rnor_5.04248,136,721 - 248,287,045 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006237706   ⟹   XP_006237768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,208,891 - 184,362,840 (+)NCBI
mRatBN7.24182,479,150 - 182,627,112 (+)NCBI
Rnor_6.04184,018,852 - 184,164,488 (+)NCBI
Rnor_5.04248,136,721 - 248,287,045 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592727   ⟹   XP_017448216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,208,891 - 184,362,840 (+)NCBI
mRatBN7.24182,479,080 - 182,631,504 (+)NCBI
Rnor_6.04184,018,846 - 184,167,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107954   ⟹   XP_038963882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,208,891 - 184,362,840 (+)NCBI
mRatBN7.24182,479,498 - 182,631,504 (+)NCBI
RefSeq Acc Id: XM_063286385   ⟹   XP_063142455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84184,208,891 - 184,362,840 (+)NCBI
RefSeq Acc Id: NP_001102123   ⟸   NM_001108653
- UniProtKB: A6IN76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237765   ⟸   XM_006237703
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZKI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237768   ⟸   XM_006237706
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A0G7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237767   ⟸   XM_006237705
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017448216   ⟸   XM_017592727
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000052303   ⟸   ENSRNOT00000055435
RefSeq Acc Id: XP_038963882   ⟸   XM_039107954
- Peptide Label: isoform X4
- UniProtKB: D4ADZ2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085568   ⟸   ENSRNOT00000116633
Ensembl Acc Id: ENSRNOP00000078249   ⟸   ENSRNOT00000094810
RefSeq Acc Id: XP_063142455   ⟸   XM_063286385
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000107545   ⟸   ENSRNOT00000140676

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ADZ2-F1-model_v2 AlphaFold D4ADZ2 1-835 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693517
Promoter ID:EPDNEW_R4042
Type:initiation region
Name:Bicd1_1
Description:BICD cargo adaptor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04184,019,116 - 184,019,176EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309444 AgrOrtholog
BioCyc Gene G2FUF-42348 BioCyc
Ensembl Genes ENSRNOG00000036911 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055435 ENTREZGENE
  ENSRNOT00000055435.4 UniProtKB/TrEMBL
  ENSRNOT00000094810.2 UniProtKB/TrEMBL
  ENSRNOT00000116633.2 UniProtKB/TrEMBL
  ENSRNOT00000140676 ENTREZGENE
  ENSRNOT00000140676.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.2470 UniProtKB/TrEMBL
InterPro Bicaudal-D_microtubule-assoc UniProtKB/TrEMBL
KEGG Report rno:362466 UniProtKB/TrEMBL
NCBI Gene 362466 ENTREZGENE
PANTHER PROTEIN BICAUDAL D HOMOLOG 1 UniProtKB/TrEMBL
  PTHR31233 UniProtKB/TrEMBL
Pfam BicD UniProtKB/TrEMBL
PhenoGen Bicd1 PhenoGen
RatGTEx ENSRNOG00000036911 RatGTEx
UniProt A0A8I5ZKI9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0G7 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LZR1_RAT UniProtKB/TrEMBL
  A6IN76 ENTREZGENE, UniProtKB/TrEMBL
  D4ADZ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Bicd1  BICD cargo adaptor 1  Bicd1  bicaudal D homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Bicd1  bicaudal D homolog 1 (Drosophila)   Bicd1_predicted  bicaudal D homolog 1 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Bicd1_predicted  bicaudal D homolog 1 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED