Man2b2 (mannosidase, alpha, class 2B, member 2) - Rat Genome Database

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Gene: Man2b2 (mannosidase, alpha, class 2B, member 2) Rattus norvegicus
Analyze
Symbol: Man2b2 (Ensembl: Mrfap1)
Name: mannosidase, alpha, class 2B, member 2 (Ensembl:Morf4 family associated protein 1)
RGD ID: 1308840
Description: Orthologous to human MAN2B2 (mannosidase alpha class 2B member 2); INTERACTS WITH acrylamide; aflatoxin B1; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ab2-450; epididymis-specific alpha-mannosidase; LOC360955; mannosidase 2, alpha B2; MGC188563
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81478,193,797 - 78,218,802 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1478,193,725 - 78,227,724 (+)EnsemblGRCr8
mRatBN7.21473,969,079 - 73,994,089 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,969,003 - 74,004,281 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1478,410,461 - 78,435,475 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,651,326 - 79,676,319 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01476,096,283 - 76,121,290 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,939,959 - 78,964,961 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,939,903 - 78,964,961 (+)Ensemblrn6Rnor6.0
Rnor_5.01487,135,572 - 87,160,118 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41479,553,600 - 79,578,877 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1472,913,859 - 72,938,768 (+)NCBICelera
RGSC_v3.11479,555,992 - 79,590,191 (+)NCBI
Cytogenetic Map14q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The core-specific lysosomal alpha(1-6)-mannosidase activity depends on aspartamidohydrolase activity. Haeuw JF, etal., Biochem J. 1994 Feb 1;297 ( Pt 3):463-6.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15632090   PMID:23376485   PMID:23533145   PMID:24006456  


Genomics

Comparative Map Data
Man2b2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81478,193,797 - 78,218,802 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1478,193,725 - 78,227,724 (+)EnsemblGRCr8
mRatBN7.21473,969,079 - 73,994,089 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,969,003 - 74,004,281 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1478,410,461 - 78,435,475 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,651,326 - 79,676,319 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01476,096,283 - 76,121,290 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,939,959 - 78,964,961 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,939,903 - 78,964,961 (+)Ensemblrn6Rnor6.0
Rnor_5.01487,135,572 - 87,160,118 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41479,553,600 - 79,578,877 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1472,913,859 - 72,938,768 (+)NCBICelera
RGSC_v3.11479,555,992 - 79,590,191 (+)NCBI
Cytogenetic Map14q21NCBI
MAN2B2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3846,575,189 - 6,623,362 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl46,575,174 - 6,623,362 (+)Ensemblhg38GRCh38
GRCh3746,576,916 - 6,625,089 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3646,627,803 - 6,675,089 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3446,694,973 - 6,742,260NCBI
Celera46,478,589 - 6,525,854 (+)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef46,509,194 - 6,555,738 (+)NCBIHuRef
CHM1_146,575,420 - 6,622,573 (+)NCBICHM1_1
T2T-CHM13v2.046,551,558 - 6,599,721 (+)NCBIT2T-CHM13v2.0
Man2b2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39536,963,913 - 36,987,973 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl536,964,265 - 36,987,997 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38536,806,813 - 36,830,649 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl536,806,921 - 36,830,653 (-)Ensemblmm10GRCm38
MGSCv37537,198,052 - 37,221,888 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36537,095,170 - 37,118,876 (-)NCBIMGSCv36mm8
Celera534,258,072 - 34,281,974 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map519.26NCBI
Man2b2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555143,743,417 - 3,771,970 (-)Ensembl
ChiLan1.0NW_0049555143,743,265 - 3,771,970 (-)NCBIChiLan1.0ChiLan1.0
MAN2B2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v236,845,904 - 6,893,488 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan146,774,830 - 6,821,475 (+)NCBINHGRI_mPanPan1
PanPan1.146,649,129 - 6,695,987 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl46,649,076 - 6,696,407 (+)EnsemblpanPan2panpan1.1
MAN2B2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1358,669,585 - 58,702,555 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha361,361,449 - 61,391,992 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0359,136,943 - 59,169,791 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1358,639,626 - 58,672,446 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0358,841,614 - 58,874,421 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0359,190,524 - 59,223,346 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Man2b2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528564,841,834 - 64,869,320 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647718,543,484 - 18,571,014 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647718,543,541 - 18,571,002 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAN2B2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl84,137,035 - 4,181,195 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.184,123,151 - 4,181,196 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.283,060,886 - 3,103,162 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAN2B2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12742,702,723 - 42,748,256 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2742,703,608 - 42,751,212 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604789,501,287 - 89,547,289 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Man2b2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475522,971,217 - 22,994,389 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475522,971,205 - 22,996,052 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Man2b2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11168,317,759 - 68,342,416 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Man2b2
113 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:111
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000064548
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat

Markers in Region
AU048890  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21473,999,384 - 73,999,683 (+)MAPPERmRatBN7.2
Rnor_6.01478,970,257 - 78,970,555NCBIRnor6.0
Rnor_5.01487,165,415 - 87,165,713UniSTSRnor5.0
RGSC_v3.41479,584,174 - 79,584,472UniSTSRGSC3.4
Celera1472,944,024 - 72,945,207UniSTS
Cytogenetic Map14q21UniSTS
RH136865  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21474,004,017 - 74,004,219 (+)MAPPERmRatBN7.2
Rnor_6.01478,974,890 - 78,975,091NCBIRnor6.0
Rnor_5.01487,170,048 - 87,170,249UniSTSRnor5.0
RGSC_v3.41479,588,807 - 79,589,008UniSTSRGSC3.4
Celera1472,949,542 - 72,949,743UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 92 59 6 356 192 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000078562   ⟹   ENSRNOP00000074589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1478,939,903 - 78,964,961 (+)Ensembl
RefSeq Acc Id: NM_001134971   ⟹   NP_001128443
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81478,193,797 - 78,218,802 (+)NCBI
mRatBN7.21473,969,079 - 73,994,089 (+)NCBI
Rnor_6.01478,939,959 - 78,964,961 (+)NCBI
Rnor_5.01487,135,572 - 87,160,118 (+)NCBI
RGSC_v3.41479,553,600 - 79,578,877 (+)RGD
Celera1472,913,859 - 72,938,768 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001128443   ⟸   NM_001134971
- Peptide Label: precursor
- UniProtKB: B5DEJ3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074589   ⟸   ENSRNOT00000078562
Protein Domains
Glycoside hydrolase family 38 central

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K8F6-F1-model_v2 AlphaFold A0A0G2K8F6 1-1004 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699376
Promoter ID:EPDNEW_R9901
Type:initiation region
Name:Man2b2_1
Description:mannosidase, alpha, class 2B, member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01478,939,941 - 78,940,001EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308840 AgrOrtholog
BioCyc Gene G2FUF-15345 BioCyc
Ensembl Genes ENSRNOG00000056162 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000061779 Ensembl
Ensembl Transcript ENSRNOT00000078562 ENTREZGENE
  ENSRNOT00000078562.3 UniProtKB/TrEMBL
  ENSRNOT00000088221.3 UniProtKB/TrEMBL
  ENSRNOT00000097552.2 UniProtKB/TrEMBL
  ENSRNOT00000122277.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.50 UniProtKB/TrEMBL
  2.60.40.1180 UniProtKB/TrEMBL
  2.60.40.1360 UniProtKB/TrEMBL
  3.20.110.10 UniProtKB/TrEMBL
  Golgi alpha-mannosidase II, domain 4 UniProtKB/TrEMBL
InterPro Glyco_hydro-type_carb-bd UniProtKB/TrEMBL
  Glyco_hydro/deAcase_b/a-brl UniProtKB/TrEMBL
  Glyco_hydro_38/57_N UniProtKB/TrEMBL
  Glyco_hydro_38_C UniProtKB/TrEMBL
  Glyco_hydro_38_cen_dom UniProtKB/TrEMBL
  Glyco_hydro_38_cen_sf UniProtKB/TrEMBL
  Glyco_hydro_38_core UniProtKB/TrEMBL
  Glyco_hydro_57/38_cen UniProtKB/TrEMBL
  Glyco_hydro_b UniProtKB/TrEMBL
  Glycosyl_Hydrlase_38 UniProtKB/TrEMBL
  MRFAP1 UniProtKB/TrEMBL
KEGG Report rno:360955 UniProtKB/TrEMBL
NCBI Gene 360955 ENTREZGENE
PANTHER ALPHA-MANNOSIDASE UniProtKB/TrEMBL
  EPIDIDYMIS-SPECIFIC ALPHA-MANNOSIDASE UniProtKB/TrEMBL
Pfam Alpha-mann_mid UniProtKB/TrEMBL
  Glyco_hydro_38 UniProtKB/TrEMBL
  Glyco_hydro_38C UniProtKB/TrEMBL
  MRFAP1 UniProtKB/TrEMBL
PharmGKB MAN2B2 RGD
PhenoGen Man2b2 PhenoGen
RatGTEx ENSRNOG00000056162 RatGTEx
  ENSRNOG00000061779 RatGTEx
SMART Alpha-mann_mid UniProtKB/TrEMBL
Superfamily-SCOP Gal_mut_like UniProtKB/TrEMBL
  Glyco_hydro/deAcase_b/a-brl UniProtKB/TrEMBL
  SSF88688 UniProtKB/TrEMBL
UniProt A0A0G2K8F6_RAT UniProtKB/TrEMBL
  A0A8I6AJ32_RAT UniProtKB/TrEMBL
  A0ABK0M3X1_RAT UniProtKB/TrEMBL
  B5DEJ3 ENTREZGENE, UniProtKB/TrEMBL
  Q7TP34_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Man2b2  mannosidase, alpha, class 2B, member 2  Man2b2  mannosidase 2, alpha B2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Man2b2  mannosidase 2, alpha B2   Man2b2_predicted  mannosidase 2, alpha B2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Man2b2_predicted  mannosidase 2, alpha B2 (predicted)      Symbol and Name status set to approved 70820 APPROVED