Man2b2 (mannosidase, alpha, class 2B, member 2) - Rat Genome Database

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Gene: Man2b2 (mannosidase, alpha, class 2B, member 2) Rattus norvegicus
Analyze
Symbol: Man2b2
Name: mannosidase, alpha, class 2B, member 2
RGD ID: 1308840
Description: Enables alpha-mannosidase activity. Involved in mannose metabolic process. Predicted to be active in lysosome. Orthologous to human MAN2B2 (mannosidase alpha class 2B member 2); INTERACTS WITH acrylamide; aflatoxin B1; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ab2-450; epididymis-specific alpha-mannosidase; LOC360955; mannosidase 2, alpha B2; MGC188563
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81478,193,797 - 78,218,802 (+)NCBIGRCr8
mRatBN7.21473,969,079 - 73,994,089 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,969,003 - 74,004,281 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1478,410,461 - 78,435,475 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,651,326 - 79,676,319 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01476,096,283 - 76,121,290 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,939,959 - 78,964,961 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,939,903 - 78,964,961 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01487,135,572 - 87,160,118 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41479,553,600 - 79,578,877 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11479,555,992 - 79,590,191 (+)NCBI
Celera1472,913,859 - 72,938,768 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
lysosome  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The core-specific lysosomal alpha(1-6)-mannosidase activity depends on aspartamidohydrolase activity. Haeuw JF, etal., Biochem J. 1994 Feb 1;297 ( Pt 3):463-6.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15632090   PMID:23376485   PMID:23533145   PMID:24006456  


Genomics

Comparative Map Data
Man2b2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81478,193,797 - 78,218,802 (+)NCBIGRCr8
mRatBN7.21473,969,079 - 73,994,089 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,969,003 - 74,004,281 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1478,410,461 - 78,435,475 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,651,326 - 79,676,319 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01476,096,283 - 76,121,290 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,939,959 - 78,964,961 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,939,903 - 78,964,961 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01487,135,572 - 87,160,118 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41479,553,600 - 79,578,877 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11479,555,992 - 79,590,191 (+)NCBI
Celera1472,913,859 - 72,938,768 (+)NCBICelera
Cytogenetic Map14q21NCBI
MAN2B2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3846,575,189 - 6,623,362 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl46,575,189 - 6,623,362 (+)EnsemblGRCh38hg38GRCh38
GRCh3746,576,916 - 6,625,089 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3646,627,803 - 6,675,089 (+)NCBINCBI36Build 36hg18NCBI36
Build 3446,694,973 - 6,742,260NCBI
Celera46,478,589 - 6,525,854 (+)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef46,509,194 - 6,555,738 (+)NCBIHuRef
CHM1_146,575,420 - 6,622,573 (+)NCBICHM1_1
T2T-CHM13v2.046,551,558 - 6,599,721 (+)NCBIT2T-CHM13v2.0
Man2b2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39536,963,913 - 36,987,973 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl536,964,265 - 36,987,997 (-)EnsemblGRCm39 Ensembl
GRCm38536,806,813 - 36,830,649 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl536,806,921 - 36,830,653 (-)EnsemblGRCm38mm10GRCm38
MGSCv37537,198,052 - 37,221,888 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36537,095,170 - 37,118,876 (-)NCBIMGSCv36mm8
Celera534,258,072 - 34,281,974 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map519.26NCBI
Man2b2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555143,743,417 - 3,771,970 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555143,743,265 - 3,771,970 (-)NCBIChiLan1.0ChiLan1.0
MAN2B2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v236,845,904 - 6,893,488 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan146,774,830 - 6,821,475 (+)NCBINHGRI_mPanPan1
PanPan1.146,649,129 - 6,695,987 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl46,649,076 - 6,696,407 (+)Ensemblpanpan1.1panPan2
MAN2B2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1358,669,585 - 58,702,555 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha361,361,449 - 61,391,992 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0359,136,943 - 59,169,791 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1358,639,626 - 58,672,446 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0358,841,614 - 58,874,421 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0359,190,524 - 59,223,346 (+)NCBIUU_Cfam_GSD_1.0
Man2b2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528564,841,834 - 64,869,320 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647718,543,484 - 18,571,014 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647718,543,541 - 18,571,002 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAN2B2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl84,137,035 - 4,181,195 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.184,123,151 - 4,181,196 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.283,060,886 - 3,103,162 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAN2B2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12742,702,723 - 42,748,256 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2742,703,608 - 42,751,212 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604789,501,287 - 89,547,289 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Man2b2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475522,971,217 - 22,994,389 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475522,971,205 - 22,996,052 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Man2b2
222 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:111
Interacting mature miRNAs:117
Transcripts:ENSRNOT00000064548
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat

Markers in Region
AU048890  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21473,999,384 - 73,999,683 (+)MAPPERmRatBN7.2
Rnor_6.01478,970,257 - 78,970,555NCBIRnor6.0
Rnor_5.01487,165,415 - 87,165,713UniSTSRnor5.0
RGSC_v3.41479,584,174 - 79,584,472UniSTSRGSC3.4
Celera1472,944,024 - 72,945,207UniSTS
Cytogenetic Map14q21UniSTS
RH136865  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21474,004,017 - 74,004,219 (+)MAPPERmRatBN7.2
Rnor_6.01478,974,890 - 78,975,091NCBIRnor6.0
Rnor_5.01487,170,048 - 87,170,249UniSTSRnor5.0
RGSC_v3.41479,588,807 - 79,589,008UniSTSRGSC3.4
Celera1472,949,542 - 72,949,743UniSTS
Cytogenetic Map14q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 13 10 30
Low 9 126 196 136 56 136 6 27 233 105 144 27 6
Below cutoff 15 18 18 18

Sequence


Ensembl Acc Id: ENSRNOT00000078562   ⟹   ENSRNOP00000074589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1478,939,903 - 78,964,961 (+)Ensembl
RefSeq Acc Id: NM_001134971   ⟹   NP_001128443
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81478,193,797 - 78,218,802 (+)NCBI
mRatBN7.21473,969,079 - 73,994,089 (+)NCBI
Rnor_6.01478,939,959 - 78,964,961 (+)NCBI
Rnor_5.01487,135,572 - 87,160,118 (+)NCBI
RGSC_v3.41479,553,600 - 79,578,877 (+)RGD
Celera1472,913,859 - 72,938,768 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001128443   ⟸   NM_001134971
- Peptide Label: precursor
- UniProtKB: B5DEJ3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074589   ⟸   ENSRNOT00000078562
Protein Domains
Glycoside hydrolase family 38 central

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K8F6-F1-model_v2 AlphaFold A0A0G2K8F6 1-1004 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699376
Promoter ID:EPDNEW_R9901
Type:initiation region
Name:Man2b2_1
Description:mannosidase, alpha, class 2B, member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01478,939,941 - 78,940,001EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308840 AgrOrtholog
BioCyc Gene G2FUF-15345 BioCyc
Ensembl Genes ENSRNOG00000056162 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000061779 Ensembl
Ensembl Transcript ENSRNOT00000078562.2 UniProtKB/TrEMBL
  ENSRNOT00000088221.2 UniProtKB/TrEMBL
  ENSRNOT00000089759.2 UniProtKB/TrEMBL
  ENSRNOT00000097552.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.50 UniProtKB/TrEMBL
  2.60.40.1180 UniProtKB/TrEMBL
  2.60.40.1360 UniProtKB/TrEMBL
  3.20.110.10 UniProtKB/TrEMBL
InterPro Glyco_hydro-type_carb-bd UniProtKB/TrEMBL
  Glyco_hydro/deAcase_b/a-brl UniProtKB/TrEMBL
  Glyco_hydro_38/57_N UniProtKB/TrEMBL
  Glyco_hydro_38_C UniProtKB/TrEMBL
  Glyco_hydro_38_cen_dom UniProtKB/TrEMBL
  Glyco_hydro_38_cen_sf UniProtKB/TrEMBL
  Glyco_hydro_38_core UniProtKB/TrEMBL
  Glyco_hydro_57/38_cen UniProtKB/TrEMBL
  Glyco_hydro_b UniProtKB/TrEMBL
  Glycosyl_Hydrlase_38 UniProtKB/TrEMBL
  MRFAP1 UniProtKB/TrEMBL
KEGG Report rno:360955 UniProtKB/TrEMBL
NCBI Gene 360955 ENTREZGENE
PANTHER ALPHA-MANNOSIDASE UniProtKB/TrEMBL
  EPIDIDYMIS-SPECIFIC ALPHA-MANNOSIDASE UniProtKB/TrEMBL
  MORF4 FAMILY-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR31324 UniProtKB/TrEMBL
Pfam Alpha-mann_mid UniProtKB/TrEMBL
  Glyco_hydro_38 UniProtKB/TrEMBL
  Glyco_hydro_38C UniProtKB/TrEMBL
  MRFAP1 UniProtKB/TrEMBL
PharmGKB MAN2B2 RGD
PhenoGen Man2b2 PhenoGen
RatGTEx ENSRNOG00000056162 RatGTEx
  ENSRNOG00000061779 RatGTEx
SMART Alpha-mann_mid UniProtKB/TrEMBL
Superfamily-SCOP Gal_mut_like UniProtKB/TrEMBL
  Glyco_hydro/deAcase_b/a-brl UniProtKB/TrEMBL
  SSF88688 UniProtKB/TrEMBL
UniProt A0A0G2K8F6_RAT UniProtKB/TrEMBL
  A0A8I6AJ32_RAT UniProtKB/TrEMBL
  A0A8L2R539_RAT UniProtKB/TrEMBL
  B5DEJ3 ENTREZGENE, UniProtKB/TrEMBL
  Q7TP34_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Man2b2  mannosidase, alpha, class 2B, member 2  Man2b2  mannosidase 2, alpha B2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Man2b2  mannosidase 2, alpha B2   Man2b2_predicted  mannosidase 2, alpha B2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Man2b2_predicted  mannosidase 2, alpha B2 (predicted)      Symbol and Name status set to approved 70820 APPROVED