Foxp1 (forkhead box P1) - Rat Genome Database

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Gene: Foxp1 (forkhead box P1) Rattus norvegicus
Analyze
Symbol: Foxp1
Name: forkhead box P1
RGD ID: 1308669
Description: Predicted to enable several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; nuclear androgen receptor binding activity; and transcription cis-regulatory region binding activity. Involved in several processes, including cellular response to tumor necrosis factor; negative regulation of cell growth involved in cardiac muscle cell development; and positive regulation of hydrogen peroxide-mediated programmed cell death. Predicted to be active in nucleus. Biomarker of hepatocellular carcinoma; lung adenocarcinoma; and trichostrongyloidiasis. Human ortholog(s) of this gene implicated in several diseases, including Barrett's esophagus; congenital heart disease; esophagus adenocarcinoma; intellectual disability-severe speech delay-mild dysmorphism syndrome; and peritonitis. Orthologous to human FOXP1 (forkhead box P1); INTERACTS WITH 17beta-estradiol; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: forkhead box protein P1; LOC297480; MGC116362
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84133,117,346 - 133,808,647 (-)NCBIGRCr8
mRatBN7.24131,559,599 - 132,155,092 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4131,564,756 - 132,112,258 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4136,982,848 - 137,214,139 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04132,763,929 - 132,994,920 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04131,381,860 - 131,613,170 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04131,362,178 - 131,963,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4131,366,744 - 131,694,755 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04195,854,029 - 196,362,864 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44133,773,373 - 134,007,018 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14134,017,481 - 134,251,846 (-)NCBI
Celera4120,424,629 - 120,655,076 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroxynon-2-enal  (ISO)
4-vinylcyclohexene dioxide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dieldrin  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glucose  (ISO)
hydralazine  (ISO)
indometacin  (ISO)
leflunomide  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methimazole  (EXP)
methoxychlor  (EXP,ISO)
methylmercury chloride  (ISO)
morphine  (ISO)
nicotine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rifampicin  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sirolimus  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Stanolone benzoate  (EXP)
succimer  (ISO)
sulfadimethoxine  (EXP)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
triadimefon  (EXP)
triclosan  (ISO)
triptonide  (ISO)
triticonazole  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
wortmannin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ development  (IEA)
cardiac muscle cell differentiation  (ISO)
cellular response to ionomycin  (IDA)
cellular response to tumor necrosis factor  (IEP)
DNA damage response  (ISO)
endothelial cell activation  (ISO)
forebrain development  (IEP)
heart development  (ISO)
immunoglobulin V(D)J recombination  (ISO)
innate vocalization behavior  (ISO)
lung development  (ISO)
lung secretory cell differentiation  (ISO)
macrophage activation  (ISO)
monocyte activation  (ISO)
motor neuron axon guidance  (ISO)
negative regulation of androgen receptor signaling pathway  (ISO)
negative regulation of B cell apoptotic process  (ISO)
negative regulation of cell growth involved in cardiac muscle cell development  (IMP)
negative regulation of DNA-templated transcription  (ISO,ISS)
negative regulation of gene expression  (ISO)
negative regulation of lung goblet cell differentiation  (ISO)
negative regulation of transcription by RNA polymerase II  (IMP,ISO)
osteoclast development  (ISO)
osteoclast differentiation  (ISO)
positive regulation of B cell receptor signaling pathway  (ISO)
positive regulation of DNA-templated transcription  (ISO)
positive regulation of endothelial cell migration  (ISO)
positive regulation of epithelial cell proliferation  (ISO)
positive regulation of hydrogen peroxide-mediated programmed cell death  (IMP)
positive regulation of immunoglobulin production  (ISO)
positive regulation of interleukin-21 production  (ISO)
positive regulation of mesenchymal cell proliferation  (ISO)
positive regulation of smooth muscle cell proliferation  (ISO)
positive regulation of TORC1 signaling  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
pre-B cell differentiation  (ISO)
regulation of action potential  (ISO)
regulation of androgen receptor signaling pathway  (ISO)
regulation of cardiac muscle cell proliferation  (ISO)
regulation of chemokine (C-X-C motif) ligand 2 production  (ISO)
regulation of defense response to bacterium  (ISO)
regulation of DNA-templated transcription  (IEA)
regulation of endothelial tube morphogenesis  (ISO)
regulation of gene expression  (ISO)
regulation of inflammatory response  (ISO)
regulation of interleukin-1 beta production  (ISO)
regulation of interleukin-12 production  (ISO)
regulation of lung goblet cell differentiation  (ISO)
regulation of macrophage colony-stimulating factor production  (ISO)
regulation of monocyte differentiation  (ISO)
regulation of transcription by RNA polymerase II  (IBA)
regulation of tumor necrosis factor production  (ISO)
response to lipopolysaccharide  (ISO)
response to testosterone  (IEP)
skeletal muscle tissue development  (ISO)
smooth muscle tissue development  (ISO)
striatum development  (IEP)
T follicular helper cell differentiation  (ISO)
transcription by RNA polymerase II  (ISO)
ventral spinal cord development  (ISO)

Cellular Component
nucleus  (IBA,IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Molecular mechanisms of Nano-selenium in mitigating hepatocellular carcinoma induced by N-nitrosodiethylamine (NDEA) in rats. Ahmed HH, etal., Toxicol Mech Methods. 2014 Sep 4:1-10.
2. Abnormal maturation and differentiation of neocortical neurons in epileptogenic cortical malformation: unique distribution of layer-specific marker cells of focal cortical dysplasia and hemimegalencephaly. Arai A, etal., Brain Res. 2012 Aug 27;1470:89-97. doi: 10.1016/j.brainres.2012.06.009. Epub 2012 Jul 1.
3. Genome-wide transcriptomic analysis of intestinal tissue to assess the impact of nutrition and a secondary nematode challenge in lactating rats. Athanasiadou S, etal., PLoS One. 2011;6(6):e20771. doi: 10.1371/journal.pone.0020771. Epub 2011 Jun 16.
4. Opposing roles of FoxP1 and Nfat3 in transcriptional control of cardiomyocyte hypertrophy. Bai S and Kerppola TK, Mol Cell Biol. 2011 Jul;31(14):3068-80. doi: 10.1128/MCB.00925-10. Epub 2011 May 23.
5. Supportive evidence for FOXP1, BARX1, and FOXF1 as genetic risk loci for the development of esophageal adenocarcinoma. Becker J, etal., Cancer Med. 2015 Nov;4(11):1700-4. doi: 10.1002/cam4.500. Epub 2015 Aug 15.
6. Androgen modulation of Foxp1 and Foxp2 in the developing rat brain: impact on sex specific vocalization. Bowers JM, etal., Endocrinology. 2014 Dec;155(12):4881-94. doi: 10.1210/en.2014-1486. Epub 2014 Sep 23.
7. Genetic abnormalities in FOXP1 are associated with congenital heart defects. Chang SW, etal., Hum Mutat. 2013 Sep;34(9):1226-30. doi: 10.1002/humu.22366. Epub 2013 Jul 11.
8. Selective deficits in the expression of striatal-enriched mRNAs in Huntington's disease. Desplats PA, etal., J Neurochem. 2006 Feb;96(3):743-57. Epub 2006 Jan 9.
9. Genetic and epigenetic analysis of non-small cell lung cancer with NotI-microarrays. Dmitriev AA, etal., Epigenetics. 2012 May;7(5):502-13. doi: 10.4161/epi.19801. Epub 2012 May 1.
10. Transcription repression and blocks in cell cycle progression in hypoplastic left heart syndrome. Gambetta K, etal., Am J Physiol Heart Circ Physiol. 2008 May;294(5):H2268-75. doi: 10.1152/ajpheart.91494.2007. Epub 2008 Mar 14.
11. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
12. Transcriptional genomics associates FOX transcription factors with human heart failure. Hannenhalli S, etal., Circulation. 2006 Sep 19;114(12):1269-76. Epub 2006 Sep 4.
13. Expression analysis in a rat psychosis model identifies novel candidate genes validated in a large case-control sample of schizophrenia. Ingason A, etal., Transl Psychiatry. 2015 Oct 13;5:e656. doi: 10.1038/tp.2015.151.
14. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
15. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
16. Polymorphisms near TBX5 and GDF7 are associated with increased risk for Barrett's esophagus. Palles C, etal., Gastroenterology. 2015 Feb;148(2):367-78. doi: 10.1053/j.gastro.2014.10.041. Epub 2014 Nov 5.
17. GOA pipeline RGD automated data pipeline
18. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
20. Down-regulation of the forkhead transcription factor Foxp1 is required for monocyte differentiation and macrophage function. Shi C, etal., Blood. 2008 Dec 1;112(12):4699-711. doi: 10.1182/blood-2008-01-137018. Epub 2008 Sep 17.
21. Reduced expressions of Foxp1 and Rassf1a genes in lung adenocarcinomas induced by N-nitrosobis(2-hydroxypropyl)amine in rats. Shimizu K, etal., Cancer Lett. 2006 May 18;236(2):186-90. Epub 2005 Jul 14.
22. A Nuclear Attack on Traumatic Brain Injury: Sequestration of Cell Death in the Nucleus. Tajiri N, etal., CNS Neurosci Ther. 2016 Apr;22(4):306-15. doi: 10.1111/cns.12501. Epub 2016 Feb 4.
23. Expression of Foxp2, a gene involved in speech and language, in the developing and adult striatum. Takahashi K, etal., J Neurosci Res. 2003 Jul 1;73(1):61-72.
24. Expression of Foxp4 in the developing and adult rat forebrain. Takahashi K, etal., J Neurosci Res. 2008 Nov 1;86(14):3106-16. doi: 10.1002/jnr.21770.
25. miR-206 Mediates YAP-Induced Cardiac Hypertrophy and Survival. Yang Y, etal., Circ Res. 2015 Oct 23;117(10):891-904. doi: 10.1161/CIRCRESAHA.115.306624. Epub 2015 Sep 2.
Additional References at PubMed
PMID:11358962   PMID:12477932   PMID:14701752   PMID:15286807   PMID:15342473   PMID:16819554   PMID:17428829   PMID:18347093   PMID:18640093   PMID:19797899   PMID:20457810   PMID:20711475  
PMID:20713518   PMID:20950788   PMID:22675208   PMID:23610558   PMID:24023716   PMID:24859450   PMID:25027557   PMID:25267198   PMID:25609649   PMID:26494785   PMID:26647308   PMID:28218735  
PMID:28408745   PMID:30111844   PMID:30170733   PMID:30302539   PMID:33128129   PMID:35000528   PMID:38556338  


Genomics

Comparative Map Data
Foxp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84133,117,346 - 133,808,647 (-)NCBIGRCr8
mRatBN7.24131,559,599 - 132,155,092 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4131,564,756 - 132,112,258 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4136,982,848 - 137,214,139 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04132,763,929 - 132,994,920 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04131,381,860 - 131,613,170 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04131,362,178 - 131,963,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4131,366,744 - 131,694,755 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04195,854,029 - 196,362,864 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44133,773,373 - 134,007,018 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14134,017,481 - 134,251,846 (-)NCBI
Celera4120,424,629 - 120,655,076 (-)NCBICelera
Cytogenetic Map4q34NCBI
FOXP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38370,954,708 - 71,583,978 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl370,954,693 - 71,583,978 (-)EnsemblGRCh38hg38GRCh38
GRCh37371,003,859 - 71,633,129 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36371,087,426 - 71,715,830 (-)NCBINCBI36Build 36hg18NCBI36
Build 34371,087,426 - 71,715,830NCBI
Celera370,931,660 - 71,563,756 (-)NCBICelera
Cytogenetic Map3p13NCBI
HuRef371,002,782 - 71,635,428 (-)NCBIHuRef
CHM1_1370,955,452 - 71,584,748 (-)NCBICHM1_1
T2T-CHM13v2.0370,991,208 - 71,623,253 (-)NCBIT2T-CHM13v2.0
Foxp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39698,902,303 - 99,510,587 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl698,902,299 - 99,499,682 (-)EnsemblGRCm39 Ensembl
GRCm38698,925,342 - 99,522,746 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl698,925,338 - 99,522,721 (-)EnsemblGRCm38mm10GRCm38
MGSCv37698,880,084 - 99,113,012 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36698,895,553 - 99,128,481 (-)NCBIMGSCv36mm8
Celera6100,793,018 - 101,026,348 (-)NCBICelera
Cytogenetic Map6D3NCBI
cM Map645.74NCBI
Foxp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542116,595,471 - 17,075,923 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542116,595,445 - 17,075,923 (+)NCBIChiLan1.0ChiLan1.0
FOXP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2270,913,505 - 71,543,398 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1370,918,294 - 71,548,139 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0370,893,933 - 71,523,892 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1372,255,364 - 72,878,625 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl372,258,456 - 72,498,173 (-)Ensemblpanpan1.1panPan2
FOXP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12020,438,631 - 21,020,516 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2020,788,433 - 21,016,397 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2020,414,104 - 20,995,815 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02020,472,109 - 21,055,068 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2020,472,198 - 21,053,329 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12020,158,227 - 20,741,182 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02020,506,753 - 21,089,395 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02020,573,511 - 21,158,112 (+)NCBIUU_Cfam_GSD_1.0
Foxp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049422,631,781 - 3,146,462 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366032,632,274 - 2,830,324 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366032,631,781 - 3,146,104 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1352,348,234 - 52,876,892 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11352,346,844 - 52,974,358 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21357,861,735 - 58,095,301 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FOXP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12231,907,941 - 32,538,294 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2231,912,460 - 32,154,502 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041134,241,728 - 134,871,978 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247735,543,536 - 5,883,131 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247735,543,529 - 6,076,522 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Foxp1
2558 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:67
Interacting mature miRNAs:75
Transcripts:ENSRNOT00000013271
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat

Markers in Region
D4Mit18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24131,730,729 - 131,730,924 (+)MAPPERmRatBN7.2
Rnor_6.04131,532,260 - 131,532,452NCBIRnor6.0
Rnor_5.04196,023,935 - 196,024,127UniSTSRnor5.0
RGSC_v3.44133,939,398 - 133,939,591RGDRGSC3.4
RGSC_v3.44133,939,399 - 133,939,591UniSTSRGSC3.4
RGSC_v3.14134,184,239 - 134,184,432RGD
Celera4120,589,296 - 120,589,480UniSTS
Cytogenetic Map4q34UniSTS
D4Wox17  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24131,730,755 - 131,730,914 (+)MAPPERmRatBN7.2
Rnor_6.04131,532,286 - 131,532,442NCBIRnor6.0
Rnor_5.04196,023,961 - 196,024,117UniSTSRnor5.0
RGSC_v3.44133,939,425 - 133,939,581UniSTSRGSC3.4
RGSC_v3.44133,939,424 - 133,939,581RGDRGSC3.4
Celera4120,589,322 - 120,589,470UniSTS
Cytogenetic Map4q34UniSTS
D4Arb16  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24131,730,738 - 131,730,991 (+)MAPPERmRatBN7.2
Rnor_6.04131,532,269 - 131,532,519NCBIRnor6.0
Rnor_5.04196,023,944 - 196,024,194UniSTSRnor5.0
RGSC_v3.44133,939,407 - 133,939,659RGDRGSC3.4
RGSC_v3.44133,939,408 - 133,939,658UniSTSRGSC3.4
Celera4120,589,305 - 120,589,547UniSTS
RH 3.4 Map4801.3UniSTS
RH 3.4 Map4801.3RGD
RH 2.0 Map4863.3RGD
SHRSP x BN Map458.74RGD
FHH x ACI Map475.85RGD
Cytogenetic Map4q34UniSTS
RH138314  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24131,596,485 - 131,596,608 (+)MAPPERmRatBN7.2
Rnor_6.04131,397,864 - 131,397,986NCBIRnor6.0
Rnor_5.04195,889,692 - 195,889,814UniSTSRnor5.0
RGSC_v3.44133,804,406 - 133,804,528UniSTSRGSC3.4
Celera4120,455,616 - 120,455,738UniSTS
RH 3.4 Map4801.2UniSTS
Cytogenetic Map4q34UniSTS
RH140136  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24131,775,302 - 131,775,486 (+)MAPPERmRatBN7.2
Rnor_6.04131,576,852 - 131,577,035NCBIRnor6.0
Rnor_5.04196,068,479 - 196,068,662UniSTSRnor5.0
RGSC_v3.44133,985,566 - 133,985,749UniSTSRGSC3.4
Celera4120,633,629 - 120,633,812UniSTS
RH 3.4 Map4801.4UniSTS
Cytogenetic Map4q34UniSTS
RH142550  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24131,766,560 - 131,766,814 (+)MAPPERmRatBN7.2
Rnor_6.04131,567,986 - 131,568,239NCBIRnor6.0
Rnor_5.04196,059,613 - 196,059,866UniSTSRnor5.0
RGSC_v3.44133,976,160 - 133,976,413UniSTSRGSC3.4
Celera4120,624,916 - 120,625,169UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001034131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC100267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000013271   ⟹   ENSRNOP00000013271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4131,564,756 - 132,112,258 (-)Ensembl
Rnor_6.0 Ensembl4131,366,744 - 131,694,755 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100443   ⟹   ENSRNOP00000095477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4131,564,756 - 132,112,258 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103186   ⟹   ENSRNOP00000082807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4131,564,756 - 131,663,897 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108862   ⟹   ENSRNOP00000088588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4131,564,756 - 132,112,258 (-)Ensembl
RefSeq Acc Id: NM_001034131   ⟹   NP_001029303
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,122,046 - 133,353,280 (-)NCBI
mRatBN7.24131,565,491 - 131,796,755 (-)NCBI
Rnor_6.04131,366,878 - 131,598,304 (-)NCBI
Rnor_5.04195,854,029 - 196,362,864 (-)NCBI
RGSC_v3.44133,773,373 - 134,007,018 (-)RGD
Celera4120,424,629 - 120,655,076 (-)RGD
Sequence:
RefSeq Acc Id: XM_006236954   ⟹   XP_006237016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,219,773 (-)NCBI
mRatBN7.24131,559,599 - 131,663,228 (-)NCBI
Rnor_6.04131,362,178 - 131,464,564 (-)NCBI
Rnor_5.04195,854,029 - 196,362,864 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006236955   ⟹   XP_006237017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,226,589 (-)NCBI
mRatBN7.24131,559,599 - 131,664,286 (-)NCBI
Rnor_6.04131,362,178 - 131,465,599 (-)NCBI
Rnor_5.04195,854,029 - 196,362,864 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006236956   ⟹   XP_006237018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,219,750 (-)NCBI
mRatBN7.24131,559,599 - 131,663,205 (-)NCBI
Rnor_6.04131,362,178 - 131,464,523 (-)NCBI
Rnor_5.04195,854,029 - 196,362,864 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592562   ⟹   XP_017448051
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,286,961 (-)NCBI
mRatBN7.24131,559,599 - 131,730,438 (-)NCBI
Rnor_6.04131,362,178 - 131,532,029 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107378   ⟹   XP_038963306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,474,255 (-)NCBI
mRatBN7.24131,559,599 - 132,155,092 (-)NCBI
RefSeq Acc Id: XM_039107379   ⟹   XP_038963307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,710,916 (-)NCBI
mRatBN7.24131,559,599 - 132,154,388 (-)NCBI
RefSeq Acc Id: XM_039107381   ⟹   XP_038963309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,455,903 (-)NCBI
mRatBN7.24131,559,599 - 131,899,397 (-)NCBI
RefSeq Acc Id: XM_039107382   ⟹   XP_038963310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,365,764 (-)NCBI
mRatBN7.24131,559,599 - 131,808,272 (-)NCBI
RefSeq Acc Id: XM_039107387   ⟹   XP_038963315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,336,105 (-)NCBI
mRatBN7.24131,559,599 - 131,782,489 (-)NCBI
RefSeq Acc Id: XM_039107388   ⟹   XP_038963316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,336,105 (-)NCBI
mRatBN7.24131,559,599 - 131,782,488 (-)NCBI
RefSeq Acc Id: XM_039107389   ⟹   XP_038963317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,500,278 (-)NCBI
mRatBN7.24131,559,599 - 132,155,092 (-)NCBI
RefSeq Acc Id: XM_063285822   ⟹   XP_063141892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,713,226 (-)NCBI
RefSeq Acc Id: XM_063285823   ⟹   XP_063141893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,808,647 (-)NCBI
RefSeq Acc Id: XM_063285824   ⟹   XP_063141894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,713,230 (-)NCBI
RefSeq Acc Id: XM_063285825   ⟹   XP_063141895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,713,229 (-)NCBI
RefSeq Acc Id: XM_063285826   ⟹   XP_063141896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,713,230 (-)NCBI
RefSeq Acc Id: XM_063285827   ⟹   XP_063141897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,713,233 (-)NCBI
RefSeq Acc Id: XM_063285828   ⟹   XP_063141898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,713,220 (-)NCBI
RefSeq Acc Id: XM_063285829   ⟹   XP_063141899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,455,918 (-)NCBI
RefSeq Acc Id: XM_063285830   ⟹   XP_063141900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,365,764 (-)NCBI
RefSeq Acc Id: XM_063285831   ⟹   XP_063141901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,713,222 (-)NCBI
RefSeq Acc Id: XM_063285832   ⟹   XP_063141902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,713,223 (-)NCBI
RefSeq Acc Id: XM_063285833   ⟹   XP_063141903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,455,908 (-)NCBI
RefSeq Acc Id: XM_063285834   ⟹   XP_063141904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,365,764 (-)NCBI
RefSeq Acc Id: XM_063285835   ⟹   XP_063141905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,713,223 (-)NCBI
RefSeq Acc Id: XM_063285836   ⟹   XP_063141906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,336,105 (-)NCBI
RefSeq Acc Id: XM_063285837   ⟹   XP_063141907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,286,736 (-)NCBI
RefSeq Acc Id: XM_063285838   ⟹   XP_063141908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,286,738 (-)NCBI
RefSeq Acc Id: XM_063285839   ⟹   XP_063141909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,286,738 (-)NCBI
RefSeq Acc Id: XM_063285840   ⟹   XP_063141910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,286,958 (-)NCBI
RefSeq Acc Id: XM_063285841   ⟹   XP_063141911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,286,958 (-)NCBI
RefSeq Acc Id: XM_063285842   ⟹   XP_063141912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,286,958 (-)NCBI
RefSeq Acc Id: XM_063285843   ⟹   XP_063141913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,219,750 (-)NCBI
RefSeq Acc Id: XM_063285844   ⟹   XP_063141914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,286,958 (-)NCBI
RefSeq Acc Id: XM_063285845   ⟹   XP_063141915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84133,117,346 - 133,226,599 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001029303 (Get FASTA)   NCBI Sequence Viewer  
  XP_006237016 (Get FASTA)   NCBI Sequence Viewer  
  XP_006237017 (Get FASTA)   NCBI Sequence Viewer  
  XP_006237018 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963306 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963307 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963309 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963310 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963315 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963316 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963317 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141892 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141893 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141894 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141895 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141896 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141897 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141898 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141899 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141900 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141901 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141902 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141903 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141904 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141905 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141906 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141907 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141908 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141909 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141910 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141911 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141912 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141913 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141914 (Get FASTA)   NCBI Sequence Viewer  
  XP_063141915 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI00268 (Get FASTA)   NCBI Sequence Viewer  
  EDL91434 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013271.5
  ENSRNOP00000082807.1
  ENSRNOP00000088588.1
  ENSRNOP00000095477.1
GenBank Protein Q498D1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001029303   ⟸   NM_001034131
- UniProtKB: Q498D1 (UniProtKB/Swiss-Prot),   A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237017   ⟸   XM_006236955
- Peptide Label: isoform X16
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237018   ⟸   XM_006236956
- Peptide Label: isoform X17
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237016   ⟸   XM_006236954
- Peptide Label: isoform X16
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448051   ⟸   XM_017592562
- Peptide Label: isoform X16
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013271   ⟸   ENSRNOT00000013271
RefSeq Acc Id: XP_038963317   ⟸   XM_039107389
- Peptide Label: isoform X22
- UniProtKB: A6IBG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963306   ⟸   XM_039107378
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963307   ⟸   XM_039107379
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963309   ⟸   XM_039107381
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963310   ⟸   XM_039107382
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963315   ⟸   XM_039107387
- Peptide Label: isoform X10
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963316   ⟸   XM_039107388
- Peptide Label: isoform X12
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000095477   ⟸   ENSRNOT00000100443
Ensembl Acc Id: ENSRNOP00000088588   ⟸   ENSRNOT00000108862
Ensembl Acc Id: ENSRNOP00000082807   ⟸   ENSRNOT00000103186
RefSeq Acc Id: XP_063141893   ⟸   XM_063285823
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141897   ⟸   XM_063285827
- Peptide Label: isoform X5
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141896   ⟸   XM_063285826
- Peptide Label: isoform X4
- UniProtKB: A6IBG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141894   ⟸   XM_063285824
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141895   ⟸   XM_063285825
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141892   ⟸   XM_063285822
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141905   ⟸   XM_063285835
- Peptide Label: isoform X9
- UniProtKB: A6IBG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141902   ⟸   XM_063285832
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141901   ⟸   XM_063285831
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141898   ⟸   XM_063285828
- Peptide Label: isoform X6
- UniProtKB: Q498D1 (UniProtKB/Swiss-Prot),   A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141899   ⟸   XM_063285829
- Peptide Label: isoform X6
- UniProtKB: Q498D1 (UniProtKB/Swiss-Prot),   A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141903   ⟸   XM_063285833
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141904   ⟸   XM_063285834
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141900   ⟸   XM_063285830
- Peptide Label: isoform X6
- UniProtKB: Q498D1 (UniProtKB/Swiss-Prot),   A0A8I6A8D7 (UniProtKB/TrEMBL),   A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141906   ⟸   XM_063285836
- Peptide Label: isoform X11
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141911   ⟸   XM_063285841
- Peptide Label: isoform X18
- UniProtKB: A0A8I5ZVX5 (UniProtKB/TrEMBL),   A0A8I6A8D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141914   ⟸   XM_063285844
- Peptide Label: isoform X20
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141910   ⟸   XM_063285840
- Peptide Label: isoform X17
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141912   ⟸   XM_063285842
- Peptide Label: isoform X19
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141908   ⟸   XM_063285838
- Peptide Label: isoform X14
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141909   ⟸   XM_063285839
- Peptide Label: isoform X15
- UniProtKB: A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141907   ⟸   XM_063285837
- Peptide Label: isoform X13
- UniProtKB: A0A8I6AJR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141915   ⟸   XM_063285845
- Peptide Label: isoform X21
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141913   ⟸   XM_063285843
- Peptide Label: isoform X19
- UniProtKB: A0A8I6A8D7 (UniProtKB/TrEMBL)
Protein Domains
Fork-head

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q498D1-F1-model_v2 AlphaFold Q498D1 1-711 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308669 AgrOrtholog
BioCyc Gene G2FUF-43591 BioCyc
Ensembl Genes ENSRNOG00000009184 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013271.7 UniProtKB/Swiss-Prot
  ENSRNOT00000100443.1 UniProtKB/TrEMBL
  ENSRNOT00000103186.1 UniProtKB/TrEMBL
  ENSRNOT00000108862.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7383433 IMAGE-MGC_LOAD
InterPro FH_FOXP1_P2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fork_head_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOXP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOXP-CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:297480 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116362 IMAGE-MGC_LOAD
NCBI Gene 297480 ENTREZGENE
PANTHER FORKHEAD BOX P, ISOFORM C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORKHEAD BOX PROTEIN P1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FOXP-CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Foxp1 PhenoGen
PRINTS FORKHEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FORK_HEAD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009184 RatGTEx
SMART SM00339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZVX5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8D7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJR4 ENTREZGENE, UniProtKB/TrEMBL
  A6IBG6 ENTREZGENE, UniProtKB/TrEMBL
  FOXP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Foxp1  forkhead box P1  Foxp1_predicted  forkhead box P1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Foxp1_predicted  forkhead box P1 (predicted)      Symbol and Name status set to approved 70820 APPROVED