Rora (RAR-related orphan receptor A) - Rat Genome Database

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Gene: Rora (RAR-related orphan receptor A) Rattus norvegicus
Analyze
Symbol: Rora
Name: RAR-related orphan receptor A
RGD ID: 1308419
Description: Predicted to enable several functions, including beta-catenin binding activity; oxysterol binding activity; and transcription coregulator binding activity. Involved in circadian rhythm. Predicted to be active in nucleus. Orthologous to human RORA (RAR related orphan receptor A); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC103693129; LOC300807; nuclear receptor ROR-alpha; nuclear receptor ROR-alpha-like; RAR-related orphan receptor alpha
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8878,182,710 - 78,915,730 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl878,182,620 - 78,915,730 (+)EnsemblGRCr8
mRatBN7.2869,301,635 - 70,034,741 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl869,301,733 - 70,025,931 (+)EnsemblmRatBN7.2
Rnor_6.0875,515,886 - 75,616,477 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl875,516,904 - 75,607,212 (+)Ensemblrn6Rnor6.0
Rnor_5.0879,195,918 - 79,934,499 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4873,052,282 - 73,817,764 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera871,690,522 - 71,789,466 (-)NCBICelera
RGSC_v3.1873,744,425 - 73,837,420 (+)NCBI
Cytogenetic Map8q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-anisomycin  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
25-hydroxycholesterol  (ISO)
3,4-dichloroaniline  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-phenoxybenzoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
all-trans-retinol  (EXP)
amphotericin B  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bifenthrin  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
chloroprene  (EXP,ISO)
chlorpyrifos  (ISO)
choline  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cortisol  (ISO)
cycloprothrin  (ISO)
cyclosporin A  (ISO)
cyhalothrin  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloromethane  (ISO)
diclofenac  (ISO)
difenoconazole  (ISO)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
drometrizole  (ISO)
endosulfan  (EXP)
endrin  (ISO)
enilconazole  (ISO)
epoxiconazole  (ISO)
esketamine  (ISO)
ethanol  (ISO)
flucythrinate  (ISO)
fluoranthene  (ISO)
flutamide  (EXP)
fluvalinate  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
hexaconazole  (ISO)
hydrogen cyanide  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
indole-3-methanol  (EXP)
isotretinoin  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
leflunomide  (EXP)
lipopolysaccharide  (ISO)
maneb  (ISO)
melatonin  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-acetyl-L-cysteine  (EXP)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
nickel dichloride  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
quercetin  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sotorasib  (ISO)
styrene  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
tetraconazole  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trametinib  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triflumizole  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zinc dichloride  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (ISO)
nucleus  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Interaction between retinoid acid receptor-related orphan receptor alpha (RORA) and neuropeptide S receptor 1 (NPSR1) in asthma. Acevedo N, etal., PLoS One. 2013;8(4):e60111. doi: 10.1371/journal.pone.0060111. Epub 2013 Apr 2.
2. ERCC5, HES6 and RORA are potential diagnostic markers of coronary artery disease. Bai Z, etal., FEBS Open Bio. 2022 Oct;12(10):1814-1827. doi: 10.1002/2211-5463.13469. Epub 2022 Aug 7.
3. The association of RAR-related orphan receptor A (RORA) gene polymorphisms with the risk of asthma. Cai X, etal., Ann Hum Genet. 2018 May;82(3):158-164. doi: 10.1111/ahg.12238. Epub 2017 Dec 28.
4. lncRNA FGD5 antisense RNA 1 upregulates RORA to suppress hypoxic injury of human cardiomyocyte cells by inhibiting oxidative stress and apoptosis via miR‑195. Cai X, etal., Mol Med Rep. 2020 Dec;22(6):4579-4588. doi: 10.3892/mmr.2020.11558. Epub 2020 Oct 2.
5. Hyperlipidaemia impairs the circadian clock and physiological homeostasis of vascular smooth muscle cells via the suppression of Smarcd1. Chen S, etal., J Pathol. 2014 Jun;233(2):159-69. doi: 10.1002/path.4338. Epub 2014 Mar 28.
6. Single nucleotide polymorphisms in FOXP1 and RORA of the lymphocyte activation-related pathway affect survival of lung cancer patients. Du H, etal., Transl Lung Cancer Res. 2022 May;11(5):890-901. doi: 10.21037/tlcr-22-104.
7. Expression Profiles of Cytokine mRNAs in the Pleural Fluid Reveal Differences Among Tuberculosis, Malignancies, and Pneumonia-Exudative Pleural Effusions. Espósito DL, etal., Lung. 2015 Dec;193(6):1001-7. doi: 10.1007/s00408-015-9809-4. Epub 2015 Sep 25.
8. Nocturnal asthma is affected by genetic interactions between RORA and NPSR1. Gaertner VD, etal., Pediatr Pulmonol. 2019 Jun;54(6):847-857. doi: 10.1002/ppul.24292. Epub 2019 Mar 29.
9. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
10. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
11. Type 2 innate lymphoid cells participate in IL-33-stimulated Th2-associated immune response in chronic obstructive pulmonary disease. Jiang M, etal., Exp Ther Med. 2019 Oct;18(4):3109-3116. doi: 10.3892/etm.2019.7924. Epub 2019 Aug 20.
12. Circadian expression of clock genes and clock-controlled genes in the rat retina. Kamphuis W, etal., Biochem Biophys Res Commun. 2005 Apr 29;330(1):18-26.
13. RORA polymorphisms are risk factors for allergic rhinitis susceptibility in the Shaanxi Han population. Lian P, etal., Int Immunopharmacol. 2022 Jul;108:108874. doi: 10.1016/j.intimp.2022.108874. Epub 2022 May 26.
14. Genetic variants in RORA are associated with asthma and allergy markers in an admixed population. Lima LC, etal., Cytokine. 2019 Jan;113:177-184. doi: 10.1016/j.cyto.2018.07.004. Epub 2018 Jul 7.
15. High retinoic acid receptor-related orphan receptor A gene expression in peripheral blood leukocytes may be related to acute myocardial infarction. Meng H, etal., J Int Med Res. 2021 Jun;49(6):3000605211019663. doi: 10.1177/03000605211019663.
16. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
17. A novel prognostic signature for idiopathic pulmonary fibrosis based on five-immune-related genes. Qiu L, etal., Ann Transl Med. 2021 Oct;9(20):1570. doi: 10.21037/atm-21-4545.
18. GOA pipeline RGD automated data pipeline
19. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
20. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
21. Exosomal miRNA-19a and miRNA-614 Induced by Air Pollutants Promote Proinflammatory M1 Macrophage Polarization via Regulation of RORα Expression in Human Respiratory Mucosal Microenvironment. Shin CH, etal., J Immunol. 2020 Dec 1;205(11):3179-3190. doi: 10.4049/jimmunol.2000456. Epub 2020 Oct 28.
22. Genetic variations in RORα are associated with chronic obstructive pulmonary disease. Yuan Y, etal., J Hum Genet. 2014 Aug;59(8):430-6. doi: 10.1038/jhg.2014.48. Epub 2014 Jun 19.
23. Identification of potentially relevant genes for myocardial infarction using RNA sequencing data analysis. Zhao Q, etal., Exp Ther Med. 2018 Feb;15(2):1456-1464. doi: 10.3892/etm.2017.5580. Epub 2017 Nov 28.
Additional References at PubMed
PMID:1565842   PMID:7518067   PMID:7838156   PMID:7838158   PMID:7926749   PMID:8996814   PMID:9328355   PMID:9862959   PMID:10478845   PMID:11053433   PMID:11252722   PMID:14687547  
PMID:15199055   PMID:17476214   PMID:17545671   PMID:17666523   PMID:17693386   PMID:18055760   PMID:18164222   PMID:18658046   PMID:18957222   PMID:19039140   PMID:19324970   PMID:19955433  
PMID:19965867   PMID:21292463   PMID:21628546   PMID:22753030   PMID:23172836   PMID:23723244   PMID:29032151   PMID:33669807   PMID:33991534  


Genomics

Comparative Map Data
Rora
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8878,182,710 - 78,915,730 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl878,182,620 - 78,915,730 (+)EnsemblGRCr8
mRatBN7.2869,301,635 - 70,034,741 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl869,301,733 - 70,025,931 (+)EnsemblmRatBN7.2
Rnor_6.0875,515,886 - 75,616,477 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl875,516,904 - 75,607,212 (+)Ensemblrn6Rnor6.0
Rnor_5.0879,195,918 - 79,934,499 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4873,052,282 - 73,817,764 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera871,690,522 - 71,789,466 (-)NCBICelera
RGSC_v3.1873,744,425 - 73,837,420 (+)NCBI
Cytogenetic Map8q24NCBI
RORA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381560,488,284 - 61,229,302 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1560,488,284 - 61,229,302 (-)Ensemblhg38GRCh38
GRCh371560,780,483 - 61,521,501 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361558,576,755 - 59,308,794 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341558,576,754 - 58,671,999NCBI
Celera1537,669,158 - 37,859,340 (-)NCBICelera
Cytogenetic Map15q22.2NCBI
HuRef1537,602,935 - 37,793,081 (-)NCBIHuRef
CHM1_11560,900,085 - 61,640,967 (-)NCBICHM1_1
T2T-CHM13v2.01558,291,519 - 59,032,551 (-)NCBIT2T-CHM13v2.0
Rora
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39968,560,627 - 69,295,528 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl968,561,068 - 69,295,528 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38968,653,404 - 69,388,246 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl968,653,786 - 69,388,246 (+)Ensemblmm10GRCm38
MGSCv37968,501,609 - 69,226,838 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36968,452,966 - 69,178,195 (+)NCBIMGSCv36mm8
Celera965,876,634 - 66,600,643 (+)NCBICelera
Cytogenetic Map9CNCBI
cM Map937.45NCBI
Rora
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545014,262,190 - 14,425,233 (+)Ensembl
ChiLan1.0NW_00495545014,262,199 - 14,434,611 (+)NCBIChiLan1.0ChiLan1.0
RORA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21649,756,431 - 50,500,133 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11553,939,419 - 54,677,888 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01539,461,553 - 40,200,118 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11557,763,345 - 57,901,854 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1557,771,735 - 57,980,460 (-)EnsemblpanPan2panpan1.1
RORA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13025,315,974 - 26,026,708 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3025,325,275 - 26,026,623 (-)NCBIcanFam3CanFam3.1
Dog10K_Boxer_Tasha3025,391,427 - 25,943,891 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03025,492,382 - 26,204,624 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3025,499,048 - 26,204,099 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13025,420,874 - 26,136,597 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03025,497,210 - 26,208,111 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03025,727,551 - 26,439,038 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rora
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640103,544,814 - 104,221,651 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647121,400,589 - 22,069,643 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647121,402,056 - 21,567,908 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RORA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1111,375,457 - 111,477,703 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11110,719,004 - 111,482,807 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21123,140,609 - 123,247,974 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RORA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12622,263,889 - 23,002,224 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2622,812,445 - 22,993,021 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666048118,365,025 - 119,123,454 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rora
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478111,014,286 - 11,679,678 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478111,014,185 - 11,688,558 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rora
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1862,996,100 - 63,719,057 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rora
4790 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:66
Interacting mature miRNAs:82
Transcripts:ENSRNOT00000013142
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85899169791341052Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)863404444108404444Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85899169791341052Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)858337123103337123Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)862848139107848139Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)860248093105248093Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85899169791341052Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)862848139107848139Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)862963099107963099Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)862982864107982864Rat

Markers in Region
D8Mgh17  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2869,349,194 - 69,349,344 (+)MAPPERmRatBN7.2
mRatBN7.2869,349,194 - 69,349,344 (-)MAPPERmRatBN7.2
Rnor_6.0874,917,593 - 74,917,742NCBIRnor6.0
Rnor_6.0880,839,918 - 80,840,067NCBIRnor6.0
Rnor_5.0879,244,914 - 79,245,063UniSTSRnor5.0
Rnor_5.0876,889,142 - 76,889,291UniSTSRnor5.0
RGSC_v3.4873,102,006 - 73,102,155UniSTSRGSC3.4
RGSC_v3.4873,102,005 - 73,102,155RGDRGSC3.4
Celera872,371,421 - 72,371,570UniSTS
RGSC_v3.1873,121,059 - 73,121,209RGD
Cytogenetic Map8q24UniSTS
D8Rat33  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8878,791,230 - 78,791,392 (+)Marker Load Pipeline
mRatBN7.2869,910,240 - 69,910,402 (+)MAPPERmRatBN7.2
Rnor_6.0875,491,856 - 75,492,017NCBIRnor6.0
Rnor_5.0879,818,765 - 79,818,926UniSTSRnor5.0
RGSC_v3.4873,700,765 - 73,701,128RGDRGSC3.4
RGSC_v3.4873,700,766 - 73,700,927UniSTSRGSC3.4
Celera871,813,307 - 71,813,468UniSTS
RGSC_v3.1873,719,820 - 73,719,981RGD
RH 3.4 Map8871.79RGD
RH 3.4 Map8871.79UniSTS
RH 2.0 Map8646.7RGD
SHRSP x BN Map844.82RGD
FHH x ACI Map851.31RGD
Cytogenetic Map8q24UniSTS
D8Rat146  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2869,352,596 - 69,352,742 (-)MAPPERmRatBN7.2
mRatBN7.2869,352,596 - 69,352,742 (+)MAPPERmRatBN7.2
Rnor_6.0880,836,277 - 80,836,420NCBIRnor6.0
Rnor_6.0874,920,991 - 74,921,134NCBIRnor6.0
Rnor_5.0879,248,312 - 79,248,455UniSTSRnor5.0
Rnor_5.0876,885,501 - 76,885,644UniSTSRnor5.0
RGSC_v3.4873,105,404 - 73,105,547UniSTSRGSC3.4
RGSC_v3.4873,105,403 - 73,105,547RGDRGSC3.4
Celera872,368,036 - 72,368,173UniSTS
RGSC_v3.1873,124,457 - 73,124,601RGD
SHRSP x BN Map844.82UniSTS
SHRSP x BN Map844.82RGD
Cytogenetic Map8q24UniSTS
D8Rat234  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8878,463,324 - 78,463,524 (+)Marker Load Pipeline
mRatBN7.2869,582,277 - 69,582,478 (+)MAPPERmRatBN7.2
Rnor_6.0874,609,451 - 74,609,651NCBIRnor6.0
Rnor_6.0875,151,013 - 75,151,213NCBIRnor6.0
Rnor_5.0879,478,996 - 79,479,196UniSTSRnor5.0
Rnor_5.0878,936,283 - 78,936,483UniSTSRnor5.0
RGSC_v3.4873,363,441 - 73,363,641UniSTSRGSC3.4
Celera872,140,085 - 72,140,285UniSTS
SHRSP x BN Map844.83UniSTS
SHRSP x BN Map844.83RGD
Cytogenetic Map8q24UniSTS
D8Got108  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2869,892,209 - 69,892,462 (+)MAPPERmRatBN7.2
Rnor_6.0875,473,828 - 75,474,078NCBIRnor6.0
Rnor_5.0879,800,737 - 79,800,987UniSTSRnor5.0
RGSC_v3.4873,682,737 - 73,682,987UniSTSRGSC3.4
RGSC_v3.4873,682,736 - 73,682,987RGDRGSC3.4
Celera871,831,207 - 71,831,457UniSTS
RGSC_v3.1873,701,791 - 73,702,041RGD
RH 3.4 Map8871.2UniSTS
RH 3.4 Map8871.2RGD
RH 2.0 Map8645.0RGD
Cytogenetic Map8q24UniSTS
D8Got306  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2869,827,011 - 69,827,150 (+)MAPPERmRatBN7.2
Rnor_6.0877,887,470 - 77,887,608NCBIRnor6.0
Rnor_6.0875,408,639 - 75,408,777NCBIRnor6.0
Rnor_5.0875,197,421 - 75,197,559UniSTSRnor5.0
Rnor_5.0879,735,020 - 79,735,158UniSTSRnor5.0
RGSC_v3.4873,616,925 - 73,617,063UniSTSRGSC3.4
Celera871,896,467 - 71,896,620UniSTS
Cytogenetic Map8q24UniSTS
D8Got305  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2869,361,077 - 69,361,219 (+)MAPPERmRatBN7.2
mRatBN7.2869,361,077 - 69,361,219 (-)MAPPERmRatBN7.2
Rnor_6.0874,929,559 - 74,929,698NCBIRnor6.0
Rnor_6.0880,827,806 - 80,827,945NCBIRnor6.0
Rnor_5.0879,256,880 - 79,257,019UniSTSRnor5.0
Rnor_5.0876,877,030 - 76,877,169UniSTSRnor5.0
RGSC_v3.4873,113,972 - 73,114,111UniSTSRGSC3.4
Celera872,359,545 - 72,359,684UniSTS
Cytogenetic Map8q24UniSTS
SGC33753  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2869,595,724 - 69,595,850 (+)MAPPERmRatBN7.2
Rnor_6.0874,622,896 - 74,623,021NCBIRnor6.0
Rnor_6.0875,164,458 - 75,164,583NCBIRnor6.0
Rnor_5.0879,492,441 - 79,492,566UniSTSRnor5.0
Rnor_5.0878,949,728 - 78,949,853UniSTSRnor5.0
RGSC_v3.4873,376,886 - 73,377,011UniSTSRGSC3.4
Cytogenetic Map8q24UniSTS
RH138861  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2869,885,046 - 69,885,170 (+)MAPPERmRatBN7.2
Rnor_6.0875,466,666 - 75,466,789NCBIRnor6.0
Rnor_5.0879,793,575 - 79,793,698UniSTSRnor5.0
RGSC_v3.4873,675,574 - 73,675,697UniSTSRGSC3.4
Celera871,838,500 - 71,838,623UniSTS
RH 3.4 Map8871.59UniSTS
Cytogenetic Map8q24UniSTS
AU049942  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2869,872,924 - 69,873,091 (+)MAPPERmRatBN7.2
Rnor_6.0875,454,546 - 75,454,710NCBIRnor6.0
Rnor_5.0879,781,455 - 79,781,619UniSTSRnor5.0
RGSC_v3.4873,663,454 - 73,663,618UniSTSRGSC3.4
Celera871,850,572 - 71,850,736UniSTS
Cytogenetic Map8q24UniSTS
RH142618  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2869,995,939 - 69,996,045 (+)MAPPERmRatBN7.2
Rnor_6.0875,577,518 - 75,577,623NCBIRnor6.0
Rnor_5.0879,904,774 - 79,904,879UniSTSRnor5.0
RGSC_v3.4873,788,039 - 73,788,144UniSTSRGSC3.4
Celera871,727,721 - 71,727,826UniSTS
Cytogenetic Map8q24UniSTS
RH144170  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2869,604,533 - 69,604,633 (+)MAPPERmRatBN7.2
Rnor_6.0875,173,272 - 75,173,371NCBIRnor6.0
Rnor_6.0874,631,641 - 74,631,740NCBIRnor6.0
Rnor_5.0879,501,255 - 79,501,354UniSTSRnor5.0
Rnor_5.0878,958,473 - 78,958,572UniSTSRnor5.0
RGSC_v3.4873,385,700 - 73,385,799UniSTSRGSC3.4
Celera872,117,947 - 72,118,046UniSTS
RH 3.4 Map8872.89UniSTS
Cytogenetic Map8q24UniSTS
BE101994  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8878,184,768 - 78,184,954 (+)Marker Load Pipeline
mRatBN7.2869,303,682 - 69,303,868 (+)MAPPERmRatBN7.2
Rnor_6.0874,870,631 - 74,870,816NCBIRnor6.0
Rnor_6.0874,494,016 - 74,494,201NCBIRnor6.0
Rnor_5.0878,820,848 - 78,821,033UniSTSRnor5.0
Rnor_5.0879,197,873 - 79,198,058UniSTSRnor5.0
RGSC_v3.4873,054,237 - 73,054,422UniSTSRGSC3.4
Celera872,416,614 - 72,416,799UniSTS
RH 3.4 Map8872.19UniSTS
Cytogenetic Map8q24UniSTS
BF400829  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2869,619,522 - 69,619,660 (+)MAPPERmRatBN7.2
Rnor_6.0875,188,241 - 75,188,378NCBIRnor6.0
Rnor_6.0874,646,614 - 74,646,751NCBIRnor6.0
Rnor_5.0879,516,224 - 79,516,361UniSTSRnor5.0
Rnor_5.0878,973,446 - 78,973,583UniSTSRnor5.0
RGSC_v3.4873,400,459 - 73,400,596UniSTSRGSC3.4
Celera872,102,940 - 72,103,077UniSTS
RH 3.4 Map8871.79UniSTS
Cytogenetic Map8q24UniSTS
RH137194  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2869,343,930 - 69,344,138 (+)MAPPERmRatBN7.2
mRatBN7.2869,343,930 - 69,344,138 (-)MAPPERmRatBN7.2
Rnor_6.0874,912,244 - 74,912,451NCBIRnor6.0
Rnor_6.0880,845,373 - 80,845,580NCBIRnor6.0
Rnor_5.0879,239,565 - 79,239,772UniSTSRnor5.0
Rnor_5.0876,894,597 - 76,894,804UniSTSRnor5.0
RGSC_v3.4873,096,436 - 73,096,643UniSTSRGSC3.4
RH 3.4 Map8871.59UniSTS
Cytogenetic Map8q24UniSTS
RH138143  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8878,796,376 - 78,796,601 (+)Marker Load Pipeline
mRatBN7.2869,915,386 - 69,915,611 (+)MAPPERmRatBN7.2
Rnor_6.0875,497,002 - 75,497,226NCBIRnor6.0
Rnor_5.0879,823,911 - 79,824,135UniSTSRnor5.0
RGSC_v3.4873,705,912 - 73,706,136UniSTSRGSC3.4
Celera871,808,098 - 71,808,322UniSTS
Cytogenetic Map8q24UniSTS
RH138260  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0879,592,062 - 79,592,304NCBIRnor5.0
Rnor_5.0876,764,549 - 76,764,791NCBIRnor5.0
RGSC_v3.4873,473,785 - 73,474,026UniSTSRGSC3.4
Celera872,029,655 - 72,029,896UniSTS
RH 3.4 Map8871.0UniSTS
Cytogenetic Map8q24UniSTS
AI406875  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2870,002,382 - 70,002,567 (+)MAPPERmRatBN7.2
Rnor_6.0875,583,961 - 75,584,145NCBIRnor6.0
Rnor_5.0879,911,217 - 79,911,401UniSTSRnor5.0
RGSC_v3.4873,794,482 - 73,794,666UniSTSRGSC3.4
Celera871,721,199 - 71,721,383UniSTS
RH 3.4 Map8871.99UniSTS
Cytogenetic Map8q24UniSTS
Rora  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8878,906,135 - 78,906,268 (+)Marker Load Pipeline
mRatBN7.2870,025,151 - 70,025,285 (+)MAPPERmRatBN7.2
Rnor_6.0875,606,890 - 75,607,023NCBIRnor6.0
Rnor_5.0879,934,146 - 79,934,279UniSTSRnor5.0
RGSC_v3.4873,817,411 - 73,817,544UniSTSRGSC3.4
Celera871,699,959 - 71,700,092UniSTS
Cytogenetic Map8q24UniSTS
G64932  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8878,434,824 - 78,435,397 (+)Marker Load Pipeline
mRatBN7.2869,553,775 - 69,554,349 (+)MAPPERmRatBN7.2
Rnor_6.0875,123,678 - 75,124,251NCBIRnor6.0
Rnor_6.0877,831,942 - 77,832,515NCBIRnor6.0
Rnor_5.0879,451,975 - 79,452,548UniSTSRnor5.0
Rnor_5.0875,251,713 - 75,252,286UniSTSRnor5.0
RGSC_v3.4873,335,777 - 73,336,350UniSTSRGSC3.4
Celera872,167,562 - 72,168,132UniSTS
Cytogenetic Map8q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 14 99 226 91 90 59 91 59 6 470 236 26 210 151 140 31 48 48

Sequence


Ensembl Acc Id: ENSRNOT00000013142   ⟹   ENSRNOP00000013142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl869,935,273 - 70,025,931 (+)Ensembl
Rnor_6.0 Ensembl875,516,904 - 75,607,212 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000039376   ⟹   ENSRNOP00000033960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl874,868,681 - 74,877,837 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111879   ⟹   ENSRNOP00000089140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl869,301,733 - 70,025,931 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142307   ⟹   ENSRNOP00000101210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl878,816,255 - 78,915,730 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148602   ⟹   ENSRNOP00000112617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl878,182,620 - 78,915,730 (+)Ensembl
RefSeq Acc Id: NM_001427366   ⟹   NP_001414295
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8878,816,255 - 78,915,730 (+)NCBI
RefSeq Acc Id: NM_001427367   ⟹   NP_001414296
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8878,182,733 - 78,915,730 (+)NCBI
RefSeq Acc Id: XM_039082824   ⟹   XP_038938752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8878,182,710 - 78,915,730 (+)NCBI
mRatBN7.2869,301,635 - 70,034,741 (+)NCBI
RefSeq Acc Id: XM_063265166   ⟹   XP_063121236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8878,816,159 - 78,915,730 (+)NCBI
RefSeq Acc Id: XM_063265167   ⟹   XP_063121237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8878,723,249 - 78,915,730 (+)NCBI
Ensembl Acc Id: ENSRNOP00000013142   ⟸   ENSRNOT00000013142
RefSeq Acc Id: XP_038938752   ⟸   XM_039082824
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000033960   ⟸   ENSRNOT00000039376
Ensembl Acc Id: ENSRNOP00000089140   ⟸   ENSRNOT00000111879
RefSeq Acc Id: NP_001414296   ⟸   NM_001427367
- Peptide Label: isoform 1
- UniProtKB: A0A8I6A803 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121237   ⟸   XM_063265167
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063121236   ⟸   XM_063265166
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001414295   ⟸   NM_001427366
- Peptide Label: isoform 2
- UniProtKB: F1LZZ3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101210   ⟸   ENSRNOT00000142307
Ensembl Acc Id: ENSRNOP00000112617   ⟸   ENSRNOT00000148602

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A8Y3-F1-model_v2 AlphaFold D4A8Y3 1-79 view protein structure
AF-F1LZZ3-F1-model_v2 AlphaFold F1LZZ3 1-467 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696103
Promoter ID:EPDNEW_R6622
Type:initiation region
Name:Rora_1
Description:RAR-related orphan receptor A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0875,516,890 - 75,516,950EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308419 AgrOrtholog
BioCyc Gene G2FUF-29971 BioCyc
Ensembl Genes ENSRNOG00000027145 Ensembl
  ENSRNOG00000049584 Ensembl
  ENSRNOG00000077683 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000142307 ENTREZGENE
  ENSRNOT00000142307.1 UniProtKB/TrEMBL
  ENSRNOT00000148602 ENTREZGENE
  ENSRNOT00000148602.1 UniProtKB/TrEMBL
NCBI Gene 300807 ENTREZGENE
PharmGKB RORA RGD
PhenoGen Rora PhenoGen
RatGTEx ENSRNOG00000027145 RatGTEx
  ENSRNOG00000049584 RatGTEx
  ENSRNOG00000077683 RatGTEx
UniProt A0A8I6A803 ENTREZGENE
  A0ABK0L011_RAT UniProtKB/TrEMBL
  A0ABK0M9J5_RAT UniProtKB/TrEMBL
  F1LZZ3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Rora  RAR-related orphan receptor A  LOC103693129  nuclear receptor ROR-alpha-like  Data merged from RGD:9405052 737654 PROVISIONAL
2014-08-25 LOC103693129  nuclear receptor ROR-alpha-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-25 Rora  RAR-related orphan receptor A  Rora  RAR-related orphan receptor alpha  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Rora  RAR-related orphan receptor alpha   Rora_predicted  RAR-related orphan receptor alpha (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rora_predicted  RAR-related orphan receptor alpha (predicted)      Symbol and Name status set to approved 70820 APPROVED