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Gene: Cnrip1 (cannabinoid receptor interacting protein 1) Rattus norvegicus

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Symbol:

Cnrip1

Name:

cannabinoid receptor interacting protein 1

RGD ID:

1308373

Description:

Enables type 1 cannabinoid receptor binding activity. Predicted to be involved in negative regulation of signaling receptor activity and regulation of trans-synaptic signaling by endocannabinoid, modulating synaptic transmission. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including GABA-ergic synapse; glutamatergic synapse; and presynapse. Orthologous to human CNRIP1 (cannabinoid receptor interacting protein 1); INTERACTS WITH all-trans-retinoic acid; bisphenol A; gentamycin.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CB1 cannabinoid receptor interacting; CB1 cannabinoid receptor-interacting protein 1; CRIP-1; Crip1a; LOC364208; RGD1308373; similar to DKFZP566K1924 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	95,664,435 - 95,707,062 (+)	NCBI		GRCr8
mRatBN7.2	14	91,462,877 - 91,492,739 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	91,462,647 - 91,492,735 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	95,775,359 - 95,802,450 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	97,019,686 - 97,046,778 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	93,484,748 - 93,511,843 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	100,217,547 - 100,247,235 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	100,217,289 - 100,247,235 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	100,291,061 - 100,320,330 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	97,908,407 - 97,937,729 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	97,927,551 - 97,956,872 (+)	NCBI
Celera	14	90,510,990 - 90,539,802 (+)	NCBI		Celera
Cytogenetic Map	14	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant nonsyndromic deafness 58 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-palmitoylglycerol (ISO)

3,3',4,4',5-pentachlorobiphenyl (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

diethylstilbestrol (ISO)

diquat (ISO)

dorsomorphin (ISO)

entinostat (ISO)

estriol (ISO)

fenthion (ISO)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glyphosate (EXP)

kainic acid (EXP)

lead(0) (ISO)

methidathion (ISO)

methylmercury chloride (ISO)

oxaliplatin (EXP)

ozone (ISO)

panobinostat (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

phenylmercury acetate (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

vorinostat (ISO)

WIN 55212-2 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of signaling receptor activity (ISO)

regulation of signaling receptor activity (ISO)

regulation of trans-synaptic signaling by endocannabinoid, modulating synaptic transmission (ISO)

Cellular Component

cytoplasm (ISO)

GABA-ergic synapse (ISO)

glutamatergic synapse (ISO)

plasma membrane (IBA,ISO)

presynapse (ISO)

Molecular Function

protein binding (IDA,ISO)

type 1 cannabinoid receptor binding (IBA,IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	CB1 cannabinoid receptor activity is modulated by the cannabinoid receptor interacting protein CRIP 1a.	Niehaus JL, etal., Mol Pharmacol. 2007 Dec;72(6):1557-66. Epub 2007 Sep 25.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:17634366	PMID:18308297	PMID:18782338	PMID:22079489	PMID:22871113	PMID:23286559	PMID:25657338	PMID:27895162	PMID:29476059

Genomics

Comparative Map Data

Cnrip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	95,664,435 - 95,707,062 (+)	NCBI		GRCr8
mRatBN7.2	14	91,462,877 - 91,492,739 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	91,462,647 - 91,492,735 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	95,775,359 - 95,802,450 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	97,019,686 - 97,046,778 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	93,484,748 - 93,511,843 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	100,217,547 - 100,247,235 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	100,217,289 - 100,247,235 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	100,291,061 - 100,320,330 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	97,908,407 - 97,937,729 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	97,927,551 - 97,956,872 (+)	NCBI
Celera	14	90,510,990 - 90,539,802 (+)	NCBI		Celera
Cytogenetic Map	14	q22	NCBI

CNRIP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	68,284,171 - 68,319,949 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	68,284,171 - 68,320,051 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	68,511,303 - 68,547,081 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	68,373,646 - 68,400,347 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	68,431,793 - 68,458,494	NCBI
Celera	2	68,360,897 - 68,396,770 (-)	NCBI		Celera
Cytogenetic Map	2	p14	NCBI
HuRef	2	68,248,683 - 68,284,582 (-)	NCBI		HuRef
CHM1_1	2	68,442,098 - 68,477,947 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	68,294,742 - 68,330,519 (-)	NCBI		T2T-CHM13v2.0

Cnrip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	17,001,859 - 17,029,372 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	17,001,586 - 17,029,371 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	17,051,859 - 17,079,372 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	17,051,586 - 17,079,371 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	16,951,937 - 16,979,375 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	16,951,937 - 16,979,375 (+)	NCBI		MGSCv36	mm8
Celera	11	17,425,098 - 17,450,009 (+)	NCBI		Celera
Cytogenetic Map	11	A2	NCBI
cM Map	11	9.5	NCBI

Cnrip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	16,563,499 - 16,588,711 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	16,563,499 - 16,588,711 (+)	NCBI	ChiLan1.0	ChiLan1.0

CNRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	58,085,538 - 58,134,775 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	58,092,645 - 58,128,508 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	68,332,179 - 68,368,033 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	69,465,496 - 69,492,148 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	69,456,924 - 69,492,716 (-)	Ensembl	panpan1.1		panPan2

CNRIP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	67,340,452 - 67,358,927 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	67,340,604 - 67,357,360 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	67,230,395 - 67,246,774 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	68,360,141 - 68,376,535 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	68,360,293 - 68,376,514 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	68,043,382 - 68,059,580 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	68,341,262 - 68,357,739 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	68,636,647 - 68,653,120 (-)	NCBI		UU_Cfam_GSD_1.0

CNRIP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	73,939,481 - 73,943,131 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	73,939,486 - 73,963,735 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	77,470,781 - 77,495,083 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNRIP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	38,768,496 - 38,792,368 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	38,769,105 - 38,792,412 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	73,174,652 - 73,207,864 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cnrip1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624762	5,029,753 - 5,054,197 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624762	5,030,278 - 5,051,504 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cnrip1
376 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	131
Count of miRNA genes:	97
Interacting mature miRNAs:	119
Transcripts:	ENSRNOT00000007104
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631213	Bw60	Body weight QTL60	4.51		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	14	79950921	95876975	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	73415323	92554092	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	95876975	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat
4889951	Bss92	Bone structure and strength QTL 92	3.9		tibia area (VT:1000281)	tibia-fibula cortical bone total cross-sectional area (CMO:0001721)	14	82057471	95876975	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	73415323	92554092	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat

Markers in Region

RH129001

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	91,492,384 - 91,492,593 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	100,246,884 - 100,247,092	NCBI	Rnor6.0
Rnor_5.0	14	100,291,204 - 100,291,412	UniSTS	Rnor5.0
RGSC_v3.4	14	97,937,378 - 97,937,586	UniSTS	RGSC3.4
Celera	14	90,539,451 - 90,539,659	UniSTS
RH 3.4 Map	14	675.1	UniSTS
Cytogenetic Map	14	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY883936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007104 ⟹ ENSRNOP00000007104

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	91,463,046 - 91,492,735 (+)	Ensembl
Rnor_6.0 Ensembl	14	100,217,393 - 100,247,235 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077171 ⟹ ENSRNOP00000071855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	91,462,647 - 91,492,735 (+)	Ensembl
Rnor_6.0 Ensembl	14	100,217,289 - 100,246,555 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118949 ⟹ ENSRNOP00000095876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	91,463,421 - 91,492,735 (+)	Ensembl

RefSeq Acc Id:

NM_001014232 ⟹ NP_001014254

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	95,664,512 - 95,694,372 (+)	NCBI
mRatBN7.2	14	91,462,877 - 91,492,739 (+)	NCBI
Rnor_6.0	14	100,217,547 - 100,247,235 (+)	NCBI
Rnor_5.0	14	100,291,061 - 100,320,330 (-)	NCBI
RGSC_v3.4	14	97,908,407 - 97,937,729 (+)	RGD
Celera	14	90,510,990 - 90,539,802 (+)	RGD

Sequence:

show sequence

TGGGGTGTACAGAGGCGACCGCTCCTAGCTGTGGCCTGCATCCATCGGCTCTCTCTTCCTCCCT
GCTTGTCCCTGCCGCCCATCGCGCTGCAGCAGCTGCCCACAGCCCGCACTGTCCACGACTCCGG
TCACGGTTGCCAGCCCCTCTGCCAGCTATGGGGGATCTACCGGGGATCGTGCGCCTTTCCATCG
CGCTGCGCATCCAACCCAATGATGGCCCTGTTTTCTTCAAGGTGGACGGGCAGCGCTTTGGGCA
GAACCGTACAATCAAGCTGCTCACCGGTTCCTCCTACAAGGTGGAGGTGAAGATTAAGCCCACA
ACACTGCAGGTCGAGAACATTTCCATTGGTGGTGTGCTTGTCCCACTGGAGCTGAAGTGTAAAG
AGCCTGATGGGGAAAGAGTTGTCTACACCGGCATATACGATACAGAAGGGGTAGCCCCAACCAA
AAGTGGAGAGCGACAACCCATCCAGATCACCATGCCGTTCACAGACATTGGGACCTTCGAGACG
GTGTGGCAAGTCAAGTTCTACAATTACCACAAGCGAGACCACTGCCAGTGGGGAAGCCCGTTCT
CCGTCATTGAGTATGAATGCAAGCCCAATGAGACGCGCAGCCTCATGTGGGTGAATAAGGAGTC
CTTCCTCTGAAAATGGCTCCTCCTGACAGTTGCTAGACAATCTCCGGAAATCGATGCTTAGACA
AACCAGCACAAGCCTTAACCAAGGCACACCATACCATGGCTGTTTCCCAACGACCTCCTATCCC
CAATTACTGTGAAAGTGTGATTCCCTCCTGAGGCAGTACCTGTGACATCGCGTGGGATGTCACG
TCCCTGAAAGTTCTCCTTCCACTATTGTATACTGGTGTTCCCGCATCTCTCTTGTCTGCCAGTG
TGAATGGAGCTCAGTGATAGTATCAGGTTTGTCCTATACCAGAAAGTTCCACAGAAGGACCATA
GTGTTTTGTTTCCGGGACAAGAAATTTCTCCCTTTTGTGTTCATTGTCAAATTAAGATAACAGT
GTGCTGGAGTCCCCCATGTGTGATTTGTAACATGTAGCATGCAATGTTTGTGAGCACCCAAAGA
AGAAGTAATAACATAAACAGCGGTAAACGGGACCCAAATATTGTGCTTCCCATCAGCAGCTGTC
AGCTTCTTCAGAGGAAGAAAGATGATGAAGAAATAAAAAGATGAGTATATAAATAAGAGTTTAT
AATGTATCAATGGTCTTTCAGGTAGCGGGGCATTTTGCTGTGATCTAGTAGAAACAGGGGAAAG
ACACTGTTGTAGAATCGGAGCTGTGGCTCGCCCCTTTGACAAACTCCCATAGACTTTAAACCAA
CATAGAGATGGCGCCCCTGCACACCCTTTCACTTGAACTTTGTACAACTGTGTATGGAATGGGT
AATCAACTTTTGATATTTCTTAATAAAGACATTGAAAAGCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAGG

hide sequence

RefSeq Acc Id:

XM_063273439 ⟹ XP_063129509

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	95,664,435 - 95,707,062 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014254	(Get FASTA)	NCBI Sequence Viewer
	XP_063129509	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH88754	(Get FASTA)	NCBI Sequence Viewer
	AAX68416	(Get FASTA)	NCBI Sequence Viewer
	EDL97901	(Get FASTA)	NCBI Sequence Viewer
	EDL97902	(Get FASTA)	NCBI Sequence Viewer
	EDL97903	(Get FASTA)	NCBI Sequence Viewer
	EDL97904	(Get FASTA)	NCBI Sequence Viewer
	EDL97905	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007104.4
	ENSRNOP00000071855.2
	ENSRNOP00000095876.1
	ENSRNOP00055010780
	ENSRNOP00060020829
	ENSRNOP00065005715
GenBank Protein	Q5M7A7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001014254 ⟸ NM_001014232
- UniProtKB:	A2RQR5 (UniProtKB/Swiss-Prot), Q5M7A7 (UniProtKB/Swiss-Prot), A6JPY5 (UniProtKB/TrEMBL), A0A0G2K1I5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGDLPGIVRLSIALRIQPNDGPVFFKVDGQRFGQNRTIKLLTGSSYKVEVKIKPTTLQVENISI GGVLVPLELKCKEPDGERVVYTGIYDTEGVAPTKSGERQPIQITMPFTDIGTFETVWQVKFYNY HKRDHCQWGSPFSVIEYECKPNETRSLMWVNKESFL hide sequence

Ensembl Acc Id:

ENSRNOP00000071855 ⟸ ENSRNOT00000077171

Ensembl Acc Id:

ENSRNOP00000007104 ⟸ ENSRNOT00000007104

Ensembl Acc Id:

ENSRNOP00000095876 ⟸ ENSRNOT00000118949

RefSeq Acc Id:	XP_063129509 ⟸ XM_063273439
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5M7A7-F1-model_v2	AlphaFold	Q5M7A7	1-164	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699509

Promoter ID:

EPDNEW_R10024

Type:

initiation region

Name:

Cnrip1_1

Description:

cannabinoid receptor interacting protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	100,217,314 - 100,217,374	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308373	AgrOrtholog
BioCyc Gene	G2FUF-14936	BioCyc
Ensembl Genes	ENSRNOG00000005326	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055007987	UniProtKB/Swiss-Prot
	ENSRNOG00060015169	UniProtKB/Swiss-Prot
	ENSRNOG00065005515	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000007104.7	UniProtKB/Swiss-Prot
	ENSRNOT00000077171.2	UniProtKB/TrEMBL
	ENSRNOT00000118949.1	UniProtKB/TrEMBL
	ENSRNOT00055013458	UniProtKB/Swiss-Prot
	ENSRNOT00060026019	UniProtKB/Swiss-Prot
	ENSRNOT00065008161	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7319918	IMAGE-MGC_LOAD
InterPro	CNRIP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:364208	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:105778	IMAGE-MGC_LOAD
NCBI Gene	364208	ENTREZGENE
PANTHER	CB1 CANNABINOID RECEPTOR-INTERACTING PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR31952	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	CNRIP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cnrip1	PhenoGen
PROSITE	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005326	RatGTEx
	ENSRNOG00055007987	RatGTEx
	ENSRNOG00060015169	RatGTEx
	ENSRNOG00065005515	RatGTEx
UniProt	A0A0G2K1I5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6APM5_RAT	UniProtKB/TrEMBL
	A2RQR5	ENTREZGENE
	A6JPY5	ENTREZGENE, UniProtKB/TrEMBL
	CNRP1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	A2RQR5	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-31	Cnrip1	cannabinoid receptor interacting protein 1	RGD1308373	similar to DKFZP566K1924 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1308373	similar to DKFZP566K1924 protein	RGD1308373_predicted	similar to DKFZP566K1924 protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1308373_predicted	similar to DKFZP566K1924 protein (predicted)	LOC364208_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC364208_predicted	similar to DKFZP566K1924 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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