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Gene: Ralgapa2 (Ral GTPase activating protein catalytic subunit alpha 2) Rattus norvegicus

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Symbol:

Ralgapa2

Name:

Ral GTPase activating protein catalytic subunit alpha 2

RGD ID:

1308023

Description:

Enables GTPase activator activity and protein heterodimerization activity. Involved in activation of GTPase activity. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human RALGAPA2 (Ral GTPase activating protein catalytic subunit alpha 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

250 kDa substrate of Akt; AS250; LOC296211; p220; Ral GTPase activating protein catalytic alpha subunit 2; Ral GTPase activating protein, alpha subunit 2 (catalytic); Ral GTPase-activating protein alpha subunit 2; ral GTPase-activating protein subunit alpha-2; RGD1308023; similar to CG5521-PA

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	154,112,005 - 154,392,070 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	154,112,014 - 154,392,138 (-)	Ensembl				GRCr8
mRatBN7.2	3	133,658,725 - 133,938,821 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	133,659,761 - 133,938,916 (-)	Ensembl				mRatBN7.2
Rnor_6.0	3	140,451,850 - 140,728,305 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	140,468,701 - 140,728,129 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	146,870,901 - 147,146,723 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	134,867,846 - 135,145,583 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	132,526,330 - 132,803,310 (-)	NCBI		Celera
RGSC_v3.1	3	134,893,509 - 134,996,492 (-)	NCBI
Cytogenetic Map	3	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

2,5-hexanedione (EXP)

2-hydroxypropanoic acid (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

Dibutyl phosphate (ISO)

dichloroacetic acid (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

entinostat (ISO)

epoxiconazole (ISO)

FR900359 (ISO)

hexadecanoic acid (ISO)

leflunomide (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

Monobutylphthalate (EXP)

N,N-diethyl-m-toluamide (EXP)

nickel sulfate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

potassium chromate (ISO)

propanal (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloroethene (ISO)

tetraphene (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of GTPase activity (IDA,ISO)

Ral protein signal transduction (ISO)

regulation of exocyst localization (ISO)

regulation of protein localization (ISO)

regulation of small GTPase mediated signal transduction (IEA)

Cellular Component

cytoplasm (IBA,IEA,ISO,ISS)

cytosol (IEA,ISO)

nucleus (IEA)

Molecular Function

GTPase activator activity (IBA,IDA,IEA,ISO)

protein binding (ISO)

protein heterodimerization activity (IPI)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Tuberous sclerosis tumor suppressor complex-like complexes act as GTPase-activating proteins for Ral GTPases.	Shirakawa R, etal., J Biol Chem. 2009 Aug 7;284(32):21580-8. doi: 10.1074/jbc.M109.012112. Epub 2009 Jun 11.

Additional References at PubMed

PMID:15057822	PMID:15632090	PMID:16490346	PMID:21148297	PMID:22664934

Genomics

Comparative Map Data

Ralgapa2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	154,112,005 - 154,392,070 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	154,112,014 - 154,392,138 (-)	Ensembl				GRCr8
mRatBN7.2	3	133,658,725 - 133,938,821 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	133,659,761 - 133,938,916 (-)	Ensembl				mRatBN7.2
Rnor_6.0	3	140,451,850 - 140,728,305 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	140,468,701 - 140,728,129 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	146,870,901 - 147,146,723 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	134,867,846 - 135,145,583 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	132,526,330 - 132,803,310 (-)	NCBI		Celera
RGSC_v3.1	3	134,893,509 - 134,996,492 (-)	NCBI
Cytogenetic Map	3	q41	NCBI

RALGAPA2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	20,389,530 - 20,712,644 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	20,389,530 - 20,712,644 (-)	Ensembl			hg38	GRCh38
GRCh37	20	20,370,174 - 20,693,287 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	20,321,411 - 20,641,266 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	20	20,447,485 - 20,767,346 (-)	NCBI		Celera
Cytogenetic Map	20	p11.23	NCBI
HuRef	20	20,333,630 - 20,656,842 (-)	NCBI		HuRef
CHM1_1	20	20,370,712 - 20,693,651 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	20,448,061 - 20,771,350 (-)	NCBI		T2T-CHM13v2.0

Ralgapa2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	146,079,326 - 146,354,174 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	146,081,799 - 146,354,264 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	146,239,876 - 146,512,254 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	146,239,879 - 146,512,344 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	146,067,032 - 146,337,740 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	146,120,893 - 146,203,447 (-)	NCBI		MGSCv36	mm8
Celera	2	147,474,453 - 147,748,942 (-)	NCBI		Celera
Cytogenetic Map	2	G1	NCBI
cM Map	2	71.33	NCBI

Ralgapa2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	28,414,386 - 28,663,485 (-)	Ensembl
ChiLan1.0	NW_004955415	28,414,856 - 28,663,485 (-)	NCBI	ChiLan1.0	ChiLan1.0

RALGAPA2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	21,268,175 - 21,594,631 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	21,267,629 - 21,591,448 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	20,338,629 - 20,662,926 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	20,299,568 - 20,625,458 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	20,299,638 - 20,625,443 (-)	Ensembl			panPan2	panpan1.1

RALGAPA2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	2,665,950 - 2,992,779 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	2,676,461 - 2,989,864 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	2,694,032 - 3,021,021 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	3,073,282 - 3,400,603 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	3,083,818 - 3,398,194 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	2,670,124 - 2,996,986 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	2,773,127 - 3,100,047 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	3,051,017 - 3,378,081 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ralgapa2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	151,333,758 - 151,615,951 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937285	8,016 - 105,025 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004937285	7,705 - 105,200 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RALGAPA2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	28,408,099 - 28,679,231 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	28,408,096 - 28,679,231 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	32,010,888 - 32,135,505 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RALGAPA2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	49,381,251 - 49,704,946 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	49,465,647 - 49,645,287 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666078	4,168,451 - 4,496,449 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ralgapa2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	20,885,215 - 21,171,787 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624741	20,889,913 - 21,171,787 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ralgapa2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	125,865,805 - 126,136,191 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ralgapa2
1793 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	16
Count of miRNA genes:	15
Interacting mature miRNAs:	15
Transcripts:	ENSRNOT00000015637
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	141508991	166376254	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	112250810	157250810	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	3	136091420	155634702	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Markers in Region

D3Rat215

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	154,367,513 - 154,367,746 (+)	Marker Load Pipeline
Rnor_6.0	3	140,703,784 - 140,704,003	NCBI	Rnor6.0
Rnor_5.0	3	147,122,482 - 147,122,701	UniSTS	Rnor5.0
RGSC_v3.4	3	135,120,846 - 135,121,076	RGD	RGSC3.4
RGSC_v3.4	3	135,120,844 - 135,121,076	UniSTS	RGSC3.4
Celera	3	132,778,800 - 132,779,032	UniSTS
RGSC_v3.1	3	135,026,419 - 135,026,649	RGD
SHRSP x BN Map	3	64.1499	RGD
SHRSP x BN Map	3	64.1499	UniSTS
Cytogenetic Map	3	q41	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001421313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005502527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005502528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005502529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015637 ⟹ ENSRNOP00000015637

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	154,132,465 - 154,392,089 (-)	Ensembl
mRatBN7.2 Ensembl	3	133,678,482 - 133,938,727 (-)	Ensembl
Rnor_6.0 Ensembl	3	140,468,701 - 140,728,129 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094218 ⟹ ENSRNOP00000080653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	154,112,014 - 154,392,089 (-)	Ensembl
mRatBN7.2 Ensembl	3	133,659,761 - 133,938,916 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106826 ⟹ ENSRNOP00000093785

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	154,112,014 - 154,392,138 (-)	Ensembl
mRatBN7.2 Ensembl	3	133,659,761 - 133,938,916 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113019 ⟹ ENSRNOP00000084183

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	154,112,014 - 154,392,089 (-)	Ensembl
mRatBN7.2 Ensembl	3	133,659,761 - 133,938,916 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125212 ⟹ ENSRNOP00000102411

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	154,112,014 - 154,392,089 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000148463 ⟹ ENSRNOP00000107754

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	154,112,014 - 154,392,089 (-)	Ensembl

RefSeq Acc Id:

NM_001421313 ⟹ NP_001408242

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,112,005 - 154,392,047 (-)	NCBI
mRatBN7.2	3	133,658,725 - 133,938,797 (-)	NCBI

RefSeq Acc Id:

XM_017592238 ⟹ XP_017447727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,112,005 - 154,392,070 (-)	NCBI
mRatBN7.2	3	133,661,955 - 133,938,820 (-)	NCBI
Rnor_6.0	3	140,451,850 - 140,728,305 (-)	NCBI

Sequence:

show sequence

ACCGTTCGGCCCGCCCCTCCTTCCTGGAGCCACCGCTTAAGCTGAGGCGGCGCGGCAGCTAGGA
GGGGGGCGGCTAGTGGCCGGAGCGACACGCGCCCGTCGCGACCCTATGCAGTGACTTGTGCGGC
GCAGGCGCCTCCTGCCCCGCCGGCGGGGCCCAGGCTTACCGCGGCGGGATGTTCTCCCGAAGGA
GCCACGGAGATGTGAAAAAGTCCACGCAGAAGGTGCTGGACCCCAAGAAGGACGTGCTGACCCG
CCTGAAGCACCTGCGGGCGCTGCTGGGAACACATGATCCACAGTATCGAGGCAGAGTGAGGGCC
GGGCACCTAGATAACGTGGATGCAAGCGATCTTAAGCAGTTTTTTGAGACCAACTATTCTCAGA
TATATTTCATCTTCTATGAAAATTTTATAACACTGGAAAATAGTTTGAAGTTAAAAGGGAATAA
TAAGTCGCAAAGGGAGGAGCTGGACTCCATCCTCTTTCTTTTTGAAAAAATACTTCAGTTTCTA
CCTGAACGAATTTTCTTTCGATGGCATTACCAGAGTATAGGCTCAACTTTAAAGAAGCTTTTAC
ACACTGGAAATTCTATTAAGATAAGGTGTGAAGGAATCAGACTGTTTCTTTTGTGGCTTCAAGC
ACTTCAGACAAACTGTGCAGAAGAGCAGGTGCTGATTTTCGCTTGCCTCGTGCCTGGTTTCCCA
GCGGTCTTGTCATCCAGGGGTCCCTGCACGCTGGAGACACTCATCAACCCTAGCCCTAGTGTAG
TTGATGCAAAAATATACCCAGAGGAAATCACCCCACTTCTGCCGGCTGTATCAGGGGAGAAGAT
CGCTGAGGACCAAACCTGCTTTTTTCTTCAAATACTGTTGAAATACATGGTTATTCAGGCTGCA
AGTTTGGAGTGGAAGAATAAGGAGAATCAAGATACTGGTTTTAAATTTCTTTTTACATTGTTCC
GAAAGTATTATCTTCCTCATTTGTTTCCATCATTTACTAAGTTAACCAACATCTACAAACCTGT
ACTTGAAATCCCCCATTTGAGACCAAAGCCACTATATGTTACTGTAACTCGAGATAATGAAACA
ATTTACAGTACAAAAATTCCATACATGGCAGCTCGCGTTGTCTTCATTAAATGGATTGTAACCT
TCTTTTTGGAAAAGAAGTATCTGACCGCAACACAGAACACTAAAAATGGAGTTGACGTATTGCC
TAAAATCATCCAGACTGTTGGTGGTGGTGCAATACAAGAAAAGGTGCCAGAGCTGGATGGTGCC
GGGGCCACAGAGCAGGACAAAAGCCATTCTAACAGTAGCACCTTGTCCGACCGAAGACTCAGCA
ACTCCAGTCTCTGTAGCATTGAAGAGGAGCATCGGACAGTGTATGAAATGGTGCAGCGGATCCT
CCTGTCTACACGCGGTTACGTGAATTTTGTGAATGAAGTATTTCGACAGGCATTTTTGTTGCCT
TCCTGTGAGATATCTATAACAAGAAAAGTAGTTCAGGTGAAATGGATCCTGCAGAACAAGCCTG
TGTTCATGGAAGAACCAGATAAAAAGGACGTTGCTGAAGAAGATGCTGACAAATTAGGACTTTC
AGAGACTGACTCCAAGGAGGTCTCATCCGAAAGTTCTGGTCATAAACGGTCATCCAGTTGGGGA
CGCACGTATTCCTTCACAAGTGCCATGAGCAGAGGGTGTGTGACAGAGGAGGACAACACAAATG
TGAAAGCTGGGGCCCAAGCTATGTTGCAGGTTTTTCTTACAAATGCTGCAAATGTCTTTTTGCT
GGAACCATGTGTTGAAGTTCCCATGCTCCTGAGAGAACAAGTAGATGCCTGTAAAGCTGTCCTG
ATTATTTTTCGGCGAATGATAATGGAACTCACAATGAATCAGAAGACATGGGAGCAGATGTTGC
AAATCCTTCTCAGGATAACAGAAGCCGTCATGCAGAAGCCAAAGGATAAGCTTGTACAGGATTC
ATTTGCCCGGAGCTTGGCAGGGCTGCTCTTCAGGACACTTATCGTGGCTTGGATCCGAGCAAAC
CTGTGTGTGTACATTTCTCGGGAGCTCTGGGATGACTTTCTCAGGGTGCTGTCATCCCTTACAG
AATGGGAGGAACTCATCACTGAGTGGTCTAATATCATGGACTCCTTGACAGCCGTGCTTGCGAG
AACTGTGTATGGAGTTGAAATGACAAACCTACCTCTGGATAAGTTAAGTGAACAGAAGGAGAAG
AAGCAGCGAGGCAAAGGTTGTGTCCTAGAGCCCCAAAAAGGGACTGCTGTTGGGAGATCCTTTT
CTCTTAGCTGGCGCAGCCATCCAGATGTAACGGAGCCAATGAGATTCAGGAGTGCCACCACATC
TGGAGCCCCAGGAGTAGAGAAGGCAAGAAATACTGTCCGTCAAAAAGCGACTGCTAAGCGAAGC
CAGTCTATCAGCAACTGTGTCCACCTCTCTGAGGCTTTGCCTGCTACTAAAAGCGTCCCGCTCC
TCCTCCATACCGTGAGCGCTCTCTTACCTGGTCTCTCTTACTCTCCTTGCTCTCACAGGCTGTC
AGAAGTGGAGGAGTTCCAACAGGCAGAGAGCACGGCTGCAGCCGACTGTGACTATCTTGTGGTA
GGACAGCAGCCGGTCCCCCGGAGCAGCAGCACCTCTGACATCACTGAGCGCTTGTACTCAGATT
CTTCTCAAGGTTACAGTCCCATGCTGCCTCATCCAGCTTTTTACATGGCTTCTGGGGATCTAAA
CTCAGGTCCTCATGCCTGCACAACAGGTCCTTTACCACTGAGCCATCTCCCCAGCCCAGGTCAA
AAGGTAGAAAATTCACAGAATTTGAGCTCTTCAGAACCCAAGTCTGTTCAAGAGAGTAAAGGTC
ACGTGACGCATGAACACGAAGGAGTAACAATCTTGGTTCGAAGGAGCAGCAGCCCTGCTGAGCT
GGATCTGAAGGAGGAGTCACAGCAGACACACGGACGATGCAGGGAGAGACAGAAGAGTGAAAGT
ACTGGTAGTGACATGGCTGTGGGCTACAGTAACGAGGCAGAGCTACCTGTGAGCCCTTGGCAGA
CCTGTGAGGAGGACCCGGAACTGAGCACTCCCACAGATGCTGTGGCTGACTCTGATGCCCGCCA
TTGGTTACAACTGAGTCCTACTGATGCTTCCAACTTAACAGAGAGCAGGGAATGCCTGGCAGAC
GACTGCAGCATAATTGCTGGAGGGAACCTCACTGGTTGGCACCCGGACTCTGCTGCTGTGCTGT
GGCGAAGAGTCTTGGGAATCCTTGGAGATGTGAATAACATCCAGTCACCGAAGATCCATGCCAA
GGTTTTCAGCTATCTCTATGAACTGTGGTACAAGCTGGCCAAGATACGAGATAATCTCGCAATA
AGCCTGGATAACCAGTCGTCTCCATCTCCTCCACTCTTGATCCCACCACTCAGAATGTTTGCAT
CATGGCTATTTAAGGCTACAACTCTGCCGAATGAATATAAAGAAGGCAAACTGCAAGCCTACAA
ACTGATCTGTGCCATGATGACCAGGCGCCAGGATGTTCTGCCCAACTCTGATTTCCTGGTGCAT
TTTTACCTCGTGATGCACCTGGGATTAACCAGCGAGGACCAGGATGTCTTAAACACCATCATAA
AAAACTGCTCGCCCCGCTTTTTCTCCCTGGGTTTGCCTGGCTTCTCCATGTTGGTGGGGGACTT
TATCACTGCTGCTGCCAGGGTCCTCAGTACAGACATGTTGGCGGCACCCCGTTCAGAAGCTCTC
ACTCTCCTCGGTTCCCTTGTCTGCTTCCCAAATACCTACCAGGAGATCCCTCTGCTGCAGTCAG
TACCAGAAGTGAGTGATGTTGTCACGGGCGCTGAAGACGTCAAGCATTACCTCATAAATATTTT
ACTGAAGAATGCTACCGAGGAACCAAATGAATGTGCAAGATGCATCGCCATTTGCTCCCTCGGG
GTCTGGATCTGTGAAGAGCTTGCACAGTGTGCCAGCCATCCTCAGGTGAAGGATGCCATCAATG
TGATAGGTGTAACTTTGAAGTTTCCTAACAAGATCGTGGCTCAGGTAGCCTGTGATGTTCTTCA
GTTGCTGGTTTCCTACTGGGAAAAGCTTCAGATGTTTGAAACTGCTCTCCCACGAAAAATGGCA
GAAATCCTTGTGGCCACAATTGCTTTCCTTTTACCAAGTGCAGAGTACTCTTCAGTGGAAACAG
ATAAAAAGTTTATTGTGTCCTTGCTCCTTTGTCTCTTGGACTGGTGCATGGCACTGCCTGTGAG
TGCCCTCCTCCACCCTGTGTCTACGGCAGTCATAGAGGAATTGCACCCATCCCGGGCTCCCTTG
CTGGATTATATCTACAGGGTTCTGCACTGCTGTGTCTGTGGCTCAAGCACATACACCCAGCAAA
GTCACTATACTTTGACCTTGGCTGACCTGTCATCCACGGATTATGACCCCTTCCTACCTCTGGC
AAACGTGAGGAACTCCGAGCCTGTCCAGTACCATTCATCAGCAGACCTGGGGAACCTGCTGACT
GTGGAAGAGGAGAAGAAGAGAAGAAGTGTGGAACTGATCCCCCTCACTGCACGCATGGTGATGG
CCCACCTAGTGAACCACCTTGGCCATTATCCACTGAGTGGGGGTCCTGCCGTGCTGCACAGCCT
GGTTAGTGAGAACCATGACAATGCCCATGTGGAAGGAACTGAGCTGTCCTCAGAGGTGTTCAGG
AGCCCAAACCTGCAGCTCTTCGTCTTTAATGATAGCACCCTCATCTCCTACCTTCAAACACCAG
CAGAAGGACCAGCTGGAGGAACTTCAGGGGGTTCCCTCTCAGACGTGAGAGTCATTGTGAGGGA
TATCTCAGGGAAGTACTCTTGGGATGGCAAGGTTTTATATGGACCTCTGGAAGGCCGCCTGGCT
CCCAGTGGAAGGAATCCCTCATTTCAGATTTCTGGCTGGCACCATCACACATGTGGACCACAGA
GCAATTTGTTTCACGGTGAGGAGGGAGATGATGTGCTTGACAAATTACTTGAAAACATTGGCCA
TACAAGCCCTGAATGCCTTTTACCATCACAACTAAATCTAAATGAGCCTTCCCCAACCCCGAGT
GCAATGAACTGTGACCAAGAAAAGGAAATCATCGAGGTCATCCTGCGCCAGAGCACACAGGAGG
ATGAGTATGTGCAGAGGTGTCACTCTAATTCTGCAGTAAAGGTCACGAGCCAAGGGCAGCCCTC
GCCAGTGGAGCCCCGGGGACCCTTCTATTTCTGCAGGCTGTTGCTTGATGACTTGGGAATGAAT
TCCTGGGACAGAAGAAAGAATTTTCATTTGTTGAAGAAAAATTCAAAATTATTGAGAGAGCTAA
AGAATCTGGACTCTCGTCAGTGCCGCGAGACCCATAAGATTGCAGTGTTCTACATTGCTGAAGG
ACAAGAAGACAAGTGTTCCATTCTAGCCAATGAAAGAGGAAGCCAAGCCTATGAAGACTTTGTT
GCTGGTCTTGGATGGGAGGTGGATCTCTCAACCCACTGTGGGTTTATGGGTGGTCTTCAGCGCA
ATGGCAGCACGGGACAGACGGCCCCTTACTATGCTACCTCGACCGTGGAAGTAATTTTCCACGT
TTCCACTCGAATGCCATCAGATTCAGATGACTCACTCACCAAAAAGCTCCGTCACCTGGGGAAT
GACGAGGTCCACATCGTCTGGTCTGAACACTCCAGGGACTACCGCAGGGGCATTATTCCAACAG
CCTTTGGAGATGTTTCCATCATTATTTACCCAATGAAGAATCATATGTTCTTCATCACAATAAC
CAAGAAGCCTGAGGTTCCATTCTTTGGGCCTCTGTTCGATGGAGCAATCGTGAGTGGGAAGCTG
CTGCCAAGCCTTATCTGTGCCACGTGCATCAATGCCAGCAGAGCGGTGAAGTGCCTCATCCCAC
TCTATCAGAGCTTCTACGAAGAGCGAGCGCTGTATCTGGAAGCAATAATTCAAAACCACCGGGA
AGTCATGACATTTGAGGATTTCGCTGCCCAAGTCTTTTCTCCCTCTCCCAGCTACTCTCTCAGT
GGAACGGATTAAAATACATAATGGTCTCATTGCGATACTTGAGCAAGGGGTCTTGACCTCCAAC
CTGAGTGTGGACCCCAAGAAAAGCCTCCATGTGGAAGAGACAGGCAAGACTCCCCTGATTTCCT
CAGAACCTCAGAATCCAGACTTCAGGAATCTGCCACTGTACCCGCACGTGCAGCAGGCTTTCTC
ATGGCTGGGCCCCAGCGTCTTCCGACGGATCTGTGGAACCTTCAAACAATGCAGCATCCCTCTT
GTCCTGGAATCTCACCAAACCCTGGGCATCA

hide sequence

RefSeq Acc Id:

XM_039106622 ⟹ XP_038962550

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,209,810 - 154,392,070 (-)	NCBI
mRatBN7.2	3	133,756,535 - 133,938,821 (-)	NCBI

RefSeq Acc Id:

XM_039106623 ⟹ XP_038962551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,221,988 - 154,392,069 (-)	NCBI
mRatBN7.2	3	133,768,709 - 133,938,820 (-)	NCBI

RefSeq Acc Id:

XM_039106624 ⟹ XP_038962552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,221,988 - 154,392,069 (-)	NCBI
mRatBN7.2	3	133,768,709 - 133,938,820 (-)	NCBI

RefSeq Acc Id:

XM_063283347 ⟹ XP_063139417

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,112,005 - 154,392,070 (-)	NCBI

RefSeq Acc Id:

XM_063283348 ⟹ XP_063139418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,112,005 - 154,392,069 (-)	NCBI

RefSeq Acc Id:

XM_063283349 ⟹ XP_063139419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,112,005 - 154,392,069 (-)	NCBI

RefSeq Acc Id:

XM_063283350 ⟹ XP_063139420

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,112,005 - 154,378,785 (-)	NCBI

RefSeq Acc Id:

XM_063283352 ⟹ XP_063139422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,112,005 - 154,292,812 (-)	NCBI

RefSeq Acc Id:

XM_063283353 ⟹ XP_063139423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,112,005 - 154,283,873 (-)	NCBI

RefSeq Acc Id:

XR_005502527

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,230,860 - 154,392,069 (-)	NCBI
mRatBN7.2	3	133,773,811 - 133,938,820 (-)	NCBI

RefSeq Acc Id:

XR_005502528

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,221,980 - 154,392,069 (-)	NCBI
mRatBN7.2	3	133,768,709 - 133,938,820 (-)	NCBI

RefSeq Acc Id:

XR_005502529

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,221,980 - 154,392,069 (-)	NCBI
mRatBN7.2	3	133,768,709 - 133,938,820 (-)	NCBI

RefSeq Acc Id:

XR_010064588

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	154,231,124 - 154,392,069 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001408242	(Get FASTA)	NCBI Sequence Viewer
	XP_017447727	(Get FASTA)	NCBI Sequence Viewer
	XP_038962550	(Get FASTA)	NCBI Sequence Viewer
	XP_038962551	(Get FASTA)	NCBI Sequence Viewer
	XP_038962552	(Get FASTA)	NCBI Sequence Viewer
	XP_063139417	(Get FASTA)	NCBI Sequence Viewer
	XP_063139418	(Get FASTA)	NCBI Sequence Viewer
	XP_063139419	(Get FASTA)	NCBI Sequence Viewer
	XP_063139420	(Get FASTA)	NCBI Sequence Viewer
	XP_063139422	(Get FASTA)	NCBI Sequence Viewer
	XP_063139423	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95127	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000080653
	ENSRNOP00000084183.1
	ENSRNOP00000093785
	ENSRNOP00000102411
GenBank Protein	P86411	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_017447727 ⟸ XM_017592238
- Peptide Label:	isoform X1
- UniProtKB:	P86411 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MFSRRSHGDVKKSTQKVLDPKKDVLTRLKHLRALLGTHDPQYRGRVRAGHLDNVDASDLKQFFE TNYSQIYFIFYENFITLENSLKLKGNNKSQREELDSILFLFEKILQFLPERIFFRWHYQSIGST LKKLLHTGNSIKIRCEGIRLFLLWLQALQTNCAEEQVLIFACLVPGFPAVLSSRGPCTLETLIN PSPSVVDAKIYPEEITPLLPAVSGEKIAEDQTCFFLQILLKYMVIQAASLEWKNKENQDTGFKF LFTLFRKYYLPHLFPSFTKLTNIYKPVLEIPHLRPKPLYVTVTRDNETIYSTKIPYMAARVVFI KWIVTFFLEKKYLTATQNTKNGVDVLPKIIQTVGGGAIQEKVPELDGAGATEQDKSHSNSSTLS DRRLSNSSLCSIEEEHRTVYEMVQRILLSTRGYVNFVNEVFRQAFLLPSCEISITRKVVQVKWI LQNKPVFMEEPDKKDVAEEDADKLGLSETDSKEVSSESSGHKRSSSWGRTYSFTSAMSRGCVTE EDNTNVKAGAQAMLQVFLTNAANVFLLEPCVEVPMLLREQVDACKAVLIIFRRMIMELTMNQKT WEQMLQILLRITEAVMQKPKDKLVQDSFARSLAGLLFRTLIVAWIRANLCVYISRELWDDFLRV LSSLTEWEELITEWSNIMDSLTAVLARTVYGVEMTNLPLDKLSEQKEKKQRGKGCVLEPQKGTA VGRSFSLSWRSHPDVTEPMRFRSATTSGAPGVEKARNTVRQKATAKRSQSISNCVHLSEALPAT KSVPLLLHTVSALLPGLSYSPCSHRLSEVEEFQQAESTAAADCDYLVVGQQPVPRSSSTSDITE RLYSDSSQGYSPMLPHPAFYMASGDLNSGPHACTTGPLPLSHLPSPGQKVENSQNLSSSEPKSV QESKGHVTHEHEGVTILVRRSSSPAELDLKEESQQTHGRCRERQKSESTGSDMAVGYSNEAELP VSPWQTCEEDPELSTPTDAVADSDARHWLQLSPTDASNLTESRECLADDCSIIAGGNLTGWHPD SAAVLWRRVLGILGDVNNIQSPKIHAKVFSYLYELWYKLAKIRDNLAISLDNQSSPSPPLLIPP LRMFASWLFKATTLPNEYKEGKLQAYKLICAMMTRRQDVLPNSDFLVHFYLVMHLGLTSEDQDV LNTIIKNCSPRFFSLGLPGFSMLVGDFITAAARVLSTDMLAAPRSEALTLLGSLVCFPNTYQEI PLLQSVPEVSDVVTGAEDVKHYLINILLKNATEEPNECARCIAICSLGVWICEELAQCASHPQV KDAINVIGVTLKFPNKIVAQVACDVLQLLVSYWEKLQMFETALPRKMAEILVATIAFLLPSAEY SSVETDKKFIVSLLLCLLDWCMALPVSALLHPVSTAVIEELHPSRAPLLDYIYRVLHCCVCGSS TYTQQSHYTLTLADLSSTDYDPFLPLANVRNSEPVQYHSSADLGNLLTVEEEKKRRSVELIPLT ARMVMAHLVNHLGHYPLSGGPAVLHSLVSENHDNAHVEGTELSSEVFRSPNLQLFVFNDSTLIS YLQTPAEGPAGGTSGGSLSDVRVIVRDISGKYSWDGKVLYGPLEGRLAPSGRNPSFQISGWHHH TCGPQSNLFHGEEGDDVLDKLLENIGHTSPECLLPSQLNLNEPSPTPSAMNCDQEKEIIEVILR QSTQEDEYVQRCHSNSAVKVTSQGQPSPVEPRGPFYFCRLLLDDLGMNSWDRRKNFHLLKKNSK LLRELKNLDSRQCRETHKIAVFYIAEGQEDKCSILANERGSQAYEDFVAGLGWEVDLSTHCGFM GGLQRNGSTGQTAPYYATSTVEVIFHVSTRMPSDSDDSLTKKLRHLGNDEVHIVWSEHSRDYRR GIIPTAFGDVSIIIYPMKNHMFFITITKKPEVPFFGPLFDGAIVSGKLLPSLICATCINASRAV KCLIPLYQSFYEERALYLEAIIQNHREVMTFEDFAAQVFSPSPSYSLSGTD hide sequence

Ensembl Acc Id:

ENSRNOP00000015637 ⟸ ENSRNOT00000015637

RefSeq Acc Id:	XP_038962550 ⟸ XM_039106622
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038962552 ⟸ XM_039106624
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038962551 ⟸ XM_039106623
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000093785 ⟸ ENSRNOT00000106826

Ensembl Acc Id:

ENSRNOP00000080653 ⟸ ENSRNOT00000094218

Ensembl Acc Id:

ENSRNOP00000084183 ⟸ ENSRNOT00000113019

RefSeq Acc Id:	NP_001408242 ⟸ NM_001421313
- UniProtKB:	P86411 (UniProtKB/Swiss-Prot), A0A8I6G4U3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139417 ⟸ XM_063283347
- Peptide Label:	isoform X2
- UniProtKB:	P86411 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063139418 ⟸ XM_063283348
- Peptide Label:	isoform X3
- UniProtKB:	P86411 (UniProtKB/Swiss-Prot), A0A8I6AGG2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139419 ⟸ XM_063283349
- Peptide Label:	isoform X4
- UniProtKB:	P86411 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063139420 ⟸ XM_063283350
- Peptide Label:	isoform X5
- UniProtKB:	P86411 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063139422 ⟸ XM_063283352
- Peptide Label:	isoform X9
- UniProtKB:	A6K791 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139423 ⟸ XM_063283353
- Peptide Label:	isoform X10
- UniProtKB:	A6K791 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102411 ⟸ ENSRNOT00000125212

Ensembl Acc Id:

ENSRNOP00000107754 ⟸ ENSRNOT00000148463

Protein Domains

Rap-GAP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P86411-F1-model_v2	AlphaFold	P86411	1-1872	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308023	AgrOrtholog
BioCyc Gene	G2FUF-47571	BioCyc
Ensembl Genes	ENSRNOG00000036964	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000094218	ENTREZGENE
	ENSRNOT00000106826	ENTREZGENE
	ENSRNOT00000113019.1	UniProtKB/Swiss-Prot
	ENSRNOT00000125212	ENTREZGENE
Gene3D-CATH	3.40.50.11210	UniProtKB/Swiss-Prot
InterPro	ARM-type_fold	UniProtKB/Swiss-Prot
	Rap/Ran-GAP_sf	UniProtKB/Swiss-Prot
	Rap_GAP_dom	UniProtKB/Swiss-Prot
	RGPA/RALGAPB_N	UniProtKB/Swiss-Prot
	Tuberin/Ral-act_asu	UniProtKB/Swiss-Prot
NCBI Gene	296211	ENTREZGENE
PANTHER	PTHR10063	UniProtKB/Swiss-Prot
	RAL GTPASE-ACTIVATING PROTEIN SUBUNIT ALPHA-2	UniProtKB/Swiss-Prot
Pfam	RALGAPB_N	UniProtKB/Swiss-Prot
	Rap_GAP	UniProtKB/Swiss-Prot
PhenoGen	Ralgapa2	PhenoGen
PROSITE	RAPGAP	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000036964	RatGTEx
Superfamily-SCOP	SSF111347	UniProtKB/Swiss-Prot
	SSF48371	UniProtKB/Swiss-Prot
UniProt	A0A8I6AGG2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G4U3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LM31_RAT	UniProtKB/TrEMBL
	A0ABK0LPB7_RAT	UniProtKB/TrEMBL
	A6K791	ENTREZGENE, UniProtKB/TrEMBL
	D3ZKI6_RAT	UniProtKB/TrEMBL
	P86411	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-12-06	Ralgapa2	Ral GTPase activating protein catalytic subunit alpha 2	Ralgapa2	Ral GTPase activating protein catalytic alpha subunit 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-03	Ralgapa2	Ral GTPase activating protein catalytic alpha subunit 2	Ralgapa2	Ral GTPase activating protein, alpha subunit 2 (catalytic)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-10	Ralgapa2	Ral GTPase activating protein, alpha subunit 2 (catalytic)	RGD1308023	similar to CG5521-PA	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1308023	similar to CG5521-PA	RGD1308023_predicted	similar to CG5521-PA (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1308023_predicted	similar to CG5521-PA (predicted)	LOC296211_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC296211_predicted	similar to CG5521-PA (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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