Dnajc17 (DnaJ heat shock protein family (Hsp40) member C17) - Rat Genome Database

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Gene: Dnajc17 (DnaJ heat shock protein family (Hsp40) member C17) Rattus norvegicus
Analyze
Symbol: Dnajc17
Name: DnaJ heat shock protein family (Hsp40) member C17
RGD ID: 1308015
Description: Predicted to enable RNA binding activity. Predicted to be involved in spliceosomal complex disassembly. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus. Orthologous to human DNAJC17 (DnaJ heat shock protein family (Hsp40) member C17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DnaJ (Hsp40) homolog, subfamily C, member 17; dnaJ homolog subfamily C member 17; LOC311329; RGD1308015; similar to RIKEN cDNA 1700025B16
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Dnajc17-ps2   Dnajc17-ps3  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,616,043 - 126,649,599 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3126,616,051 - 126,649,656 (-)EnsemblGRCr8
mRatBN7.23106,162,197 - 106,195,771 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,162,197 - 106,195,751 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3109,835,376 - 109,868,937 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,430,914 - 118,464,479 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,091,300 - 116,124,857 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,980,074 - 111,013,602 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,980,074 - 111,013,589 (-)Ensemblrn6Rnor6.0
Rnor_5.03117,530,712 - 117,564,237 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43105,687,465 - 105,721,953 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3105,075,234 - 105,108,964 (-)NCBICelera
RGSC_v3.13105,583,892 - 105,618,363 (-)NCBI
Cytogenetic Map3q35NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IDA,IEA)
nucleus  (IDA,IEA)
spliceosomal complex  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. A locus on mouse chromosome 2 is involved in susceptibility to congenital hypothyroidism and contains an essential gene expressed in thyroid. Amendola E, etal., Endocrinology. 2010 Apr;151(4):1948-58. doi: 10.1210/en.2009-1240. Epub 2010 Feb 16.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23716698  


Genomics

Comparative Map Data
Dnajc17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,616,043 - 126,649,599 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3126,616,051 - 126,649,656 (-)EnsemblGRCr8
mRatBN7.23106,162,197 - 106,195,771 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,162,197 - 106,195,751 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3109,835,376 - 109,868,937 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,430,914 - 118,464,479 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,091,300 - 116,124,857 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,980,074 - 111,013,602 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,980,074 - 111,013,589 (-)Ensemblrn6Rnor6.0
Rnor_5.03117,530,712 - 117,564,237 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43105,687,465 - 105,721,953 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3105,075,234 - 105,108,964 (-)NCBICelera
RGSC_v3.13105,583,892 - 105,618,363 (-)NCBI
Cytogenetic Map3q35NCBI
DNAJC17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,765,161 - 40,807,473 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,765,161 - 40,807,498 (-)Ensemblhg38GRCh38
GRCh371541,057,359 - 41,099,671 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,847,363 - 38,886,947 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1517,827,960 - 17,867,572 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,908,212 - 17,947,793 (-)NCBIHuRef
CHM1_11541,180,092 - 41,219,690 (-)NCBICHM1_1
T2T-CHM13v2.01538,571,183 - 38,613,497 (-)NCBIT2T-CHM13v2.0
Dnajc17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,002,981 - 119,039,342 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2119,002,981 - 119,039,276 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382119,172,500 - 119,208,838 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,172,500 - 119,208,795 (-)Ensemblmm10GRCm38
MGSCv372118,998,236 - 119,034,531 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362118,863,941 - 118,900,215 (-)NCBIMGSCv36mm8
Celera2120,323,130 - 120,358,917 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.97NCBI
Dnajc17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,616,716 - 7,672,342 (-)Ensembl
ChiLan1.0NW_0049554167,620,553 - 7,672,344 (-)NCBIChiLan1.0ChiLan1.0
DNAJC17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21630,008,895 - 30,048,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11534,160,328 - 34,199,620 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,708,842 - 19,748,136 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,960,965 - 37,999,674 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,960,965 - 37,999,674 (-)EnsemblpanPan2panpan1.1
DNAJC17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,904,519 - 7,945,222 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,904,517 - 7,945,125 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha307,958,496 - 7,999,842 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0308,031,470 - 8,073,599 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl308,029,944 - 8,073,543 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,954,951 - 7,996,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0308,062,192 - 8,103,842 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,191,037 - 8,233,134 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dnajc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,328,948 - 86,352,810 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,177,623 - 4,200,879 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,177,636 - 4,200,873 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,516,779 - 130,559,234 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11130,516,725 - 130,559,233 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,674,935 - 145,717,606 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJC17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,193,826 - 42,238,883 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,193,852 - 42,238,811 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604898,742,545 - 98,787,304 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajc17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248048,016,841 - 8,056,270 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248048,016,834 - 8,056,279 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dnajc17
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1597,350,849 - 97,384,438 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dnajc17
235 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:25
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000016692
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3122654702136118980Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)3116582412136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3101255536134750886Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)3125814931139636791Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat

Markers in Region
RH128082  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23106,165,107 - 106,165,287 (+)MAPPERmRatBN7.2
Rnor_6.03110,982,985 - 110,983,164NCBIRnor6.0
Rnor_5.03117,533,623 - 117,533,802UniSTSRnor5.0
RGSC_v3.43105,690,376 - 105,690,555UniSTSRGSC3.4
Celera3105,078,145 - 105,078,324UniSTS
RH 3.4 Map3913.1UniSTS
Cytogenetic Map3q35UniSTS
RH130531  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23106,161,880 - 106,162,069 (+)MAPPERmRatBN7.2
Rnor_6.03110,979,758 - 110,979,946NCBIRnor6.0
Rnor_5.03117,530,396 - 117,530,584UniSTSRnor5.0
RGSC_v3.43105,687,149 - 105,687,337UniSTSRGSC3.4
Celera3105,074,918 - 105,075,106UniSTS
RH 3.4 Map3913.1UniSTS
Cytogenetic Map3q35UniSTS
RH143671  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23106,196,342 - 106,196,443 (+)MAPPERmRatBN7.2
Rnor_6.03111,014,221 - 111,014,321NCBIRnor6.0
Rnor_5.03117,564,856 - 117,564,956UniSTSRnor5.0
RGSC_v3.43105,722,572 - 105,722,672UniSTSRGSC3.4
Celera3105,109,583 - 105,109,683UniSTS
RH 3.4 Map3913.1UniSTS
Cytogenetic Map3q35UniSTS
AI029839  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22010,585,487 - 10,585,706 (+)MAPPERmRatBN7.2
mRatBN7.23106,167,562 - 106,167,744 (+)MAPPERmRatBN7.2
Rnor_6.03110,985,440 - 110,985,621NCBIRnor6.0
Rnor_6.02011,315,059 - 11,315,277NCBIRnor6.0
Rnor_5.02013,485,310 - 13,485,528UniSTSRnor5.0
Rnor_5.03117,536,078 - 117,536,259UniSTSRnor5.0
RGSC_v3.43105,692,831 - 105,693,012UniSTSRGSC3.4
RGSC_v3.42010,929,620 - 10,929,838UniSTSRGSC3.4
Celera2012,091,839 - 12,092,057UniSTS
Celera3105,080,567 - 105,080,748UniSTS
RH 3.4 Map3913.5UniSTS
Cytogenetic Map3q35UniSTS
AU047742  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23106,182,844 - 106,183,016 (+)MAPPERmRatBN7.2
Rnor_6.03111,000,720 - 111,000,891NCBIRnor6.0
Rnor_6.03112,634,758 - 112,634,929NCBIRnor6.0
Rnor_5.03117,551,358 - 117,551,529UniSTSRnor5.0
Rnor_5.03119,179,438 - 119,179,609UniSTSRnor5.0
RGSC_v3.43105,709,074 - 105,709,245UniSTSRGSC3.4
Celera3105,095,833 - 105,096,004UniSTS
Cytogenetic Map3q35UniSTS
RH139445  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23106,167,168 - 106,167,374 (+)MAPPERmRatBN7.2
Rnor_6.03110,985,046 - 110,985,251NCBIRnor6.0
Rnor_5.03117,535,684 - 117,535,889UniSTSRnor5.0
RGSC_v3.43105,692,437 - 105,692,642UniSTSRGSC3.4
Celera3105,080,173 - 105,080,378UniSTS
RH 3.4 Map3915.0UniSTS
Cytogenetic Map3q35UniSTS
D9Bwg1371e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2699,317,873 - 99,318,177 (+)MAPPERmRatBN7.2
Rnor_6.06103,820,353 - 103,820,656NCBIRnor6.0
Rnor_6.0664,648,467 - 64,648,769NCBIRnor6.0
Rnor_5.06111,996,628 - 111,996,931UniSTSRnor5.0
Rnor_5.0674,229,548 - 74,229,850UniSTSRnor5.0
Celera697,673,883 - 97,674,186UniSTS
Cytogenetic Map3q35UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016692   ⟹   ENSRNOP00000016692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3126,616,051 - 126,649,656 (-)Ensembl
mRatBN7.2 Ensembl3106,162,197 - 106,195,751 (-)Ensembl
Rnor_6.0 Ensembl3110,980,074 - 111,013,589 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105878   ⟹   ENSRNOP00000095595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3126,616,051 - 126,649,406 (-)Ensembl
mRatBN7.2 Ensembl3106,162,197 - 106,176,237 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111797   ⟹   ENSRNOP00000088756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3126,616,051 - 126,638,715 (-)Ensembl
mRatBN7.2 Ensembl3106,162,197 - 106,184,870 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114013   ⟹   ENSRNOP00000084995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3126,616,051 - 126,649,463 (-)Ensembl
mRatBN7.2 Ensembl3106,162,197 - 106,184,870 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119119   ⟹   ENSRNOP00000090029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3126,616,051 - 126,636,932 (-)Ensembl
mRatBN7.2 Ensembl3106,162,197 - 106,190,331 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000134362   ⟹   ENSRNOP00000112427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3126,616,051 - 126,648,750 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000134758   ⟹   ENSRNOP00000100076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3126,616,051 - 126,637,139 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000143595   ⟹   ENSRNOP00000105137
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3126,616,051 - 126,635,762 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000148280   ⟹   ENSRNOP00000108354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3126,619,539 - 126,649,568 (-)Ensembl
RefSeq Acc Id: NM_001191740   ⟹   NP_001178669
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83126,616,043 - 126,649,568 (-)NCBI
mRatBN7.23106,162,197 - 106,195,724 (-)NCBI
Rnor_6.03110,980,074 - 111,013,602 (-)NCBI
Rnor_5.03117,530,712 - 117,564,237 (-)NCBI
Celera3105,075,234 - 105,108,964 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010064617
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83126,616,043 - 126,649,599 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001178669 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D3ZSC8 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016692.5
  ENSRNOP00000090029
RefSeq Acc Id: NP_001178669   ⟸   NM_001191740
- UniProtKB: D3ZSC8 (UniProtKB/TrEMBL),   A6HPE4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016692   ⟸   ENSRNOT00000016692
Ensembl Acc Id: ENSRNOP00000084995   ⟸   ENSRNOT00000114013
Ensembl Acc Id: ENSRNOP00000095595   ⟸   ENSRNOT00000105878
Ensembl Acc Id: ENSRNOP00000088756   ⟸   ENSRNOT00000111797
Ensembl Acc Id: ENSRNOP00000090029   ⟸   ENSRNOT00000119119
Ensembl Acc Id: ENSRNOP00000100076   ⟸   ENSRNOT00000134758
Ensembl Acc Id: ENSRNOP00000108354   ⟸   ENSRNOT00000148280
Ensembl Acc Id: ENSRNOP00000105137   ⟸   ENSRNOT00000143595
Ensembl Acc Id: ENSRNOP00000112427   ⟸   ENSRNOT00000134362
Protein Domains
J   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSC8-F1-model_v2 AlphaFold D3ZSC8 1-303 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692321
Promoter ID:EPDNEW_R2845
Type:multiple initiation site
Name:Dnajc17_1
Description:DnaJ heat shock protein family member C17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03111,013,586 - 111,013,646EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308015 AgrOrtholog
BioCyc Gene G2FUF-48215 BioCyc
Ensembl Genes ENSRNOG00000012368 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000016692.8 UniProtKB/Swiss-Prot
  ENSRNOT00000119119 ENTREZGENE
Gene3D-CATH 1.10.287.110 UniProtKB/Swiss-Prot
  3.30.70.330 UniProtKB/Swiss-Prot
InterPro DnaJ_domain UniProtKB/Swiss-Prot
  DNAJC17_RRM UniProtKB/Swiss-Prot
  J_dom_sf UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  Pre-mRNA-splicing_ERAD UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
KEGG Report rno:311329 UniProtKB/Swiss-Prot
NCBI Gene 311329 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 17 UniProtKB/Swiss-Prot
  DNAJ HOMOLOG SUBFAMILY C MEMBER 17 UniProtKB/Swiss-Prot
Pfam DnaJ UniProtKB/Swiss-Prot
PhenoGen Dnajc17 PhenoGen
PRINTS JDOMAIN UniProtKB/Swiss-Prot
PROSITE DNAJ_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012368 RatGTEx
SMART DnaJ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46565 UniProtKB/Swiss-Prot
  SSF54928 UniProtKB/Swiss-Prot
UniProt A0A8I5ZZ69_RAT UniProtKB/TrEMBL
  A0A8I6A6T8_RAT UniProtKB/TrEMBL
  A0A8I6ACV7_RAT UniProtKB/TrEMBL
  A0A8I6ANQ1_RAT UniProtKB/TrEMBL
  A0ABK0KYJ4_RAT UniProtKB/TrEMBL
  A0ABK0L5M9_RAT UniProtKB/TrEMBL
  A0ABK0LR01_RAT UniProtKB/TrEMBL
  A0ABK0M4T0_RAT UniProtKB/TrEMBL
  A6HPE4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZSC8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Dnajc17  DnaJ heat shock protein family (Hsp40) member C17  Dnajc17  DnaJ (Hsp40) homolog, subfamily C, member 17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Dnajc17  DnaJ (Hsp40) homolog, subfamily C, member 17   Dnajc17_predicted  DnaJ (Hsp40) homolog, subfamily C, member 17 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Dnajc17_predicted  DnaJ (Hsp40) homolog, subfamily C, member 17 (predicted)  RGD1308015_predicted  similar to RIKEN cDNA 1700025B16 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1308015_predicted  similar to RIKEN cDNA 1700025B16 (predicted)  LOC311329_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC311329_predicted  similar to RIKEN cDNA 1700025B16 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL