Usp30 (ubiquitin specific peptidase 30) - Rat Genome Database

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Gene: Usp30 (ubiquitin specific peptidase 30) Rattus norvegicus
Analyze
Symbol: Usp30
Name: ubiquitin specific peptidase 30
RGD ID: 1307949
Description: Predicted to enable cysteine-type deubiquitinase activity and cysteine-type endopeptidase activity. Involved in negative regulation of mitophagy. Predicted to be located in mitochondrial outer membrane. Predicted to be active in cytosol and nucleus. Orthologous to human USP30 (ubiquitin specific peptidase 30); PARTICIPATES IN mitochondrial autophagy pathway; INTERACTS WITH bisphenol A; decabromodiphenyl ether; glyphosate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: deubiquitinating enzyme 30; LOC304579; ub-specific protease 30; ubiquitin carboxyl-terminal hydrolase 30; ubiquitin specific protease 30; ubiquitin thioesterase 30; ubiquitin-specific-processing protease 30
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81248,161,905 - 48,215,878 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1248,161,908 - 48,215,968 (-)EnsemblGRCr8
mRatBN7.21242,501,345 - 42,555,311 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,501,348 - 42,555,616 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1243,668,550 - 43,692,334 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01244,282,141 - 44,305,925 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01243,342,658 - 43,366,442 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,262,663 - 48,316,580 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,262,658 - 48,316,722 (-)Ensemblrn6Rnor6.0
Rnor_5.01250,044,991 - 50,068,680 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41243,536,736 - 43,560,425 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1244,105,878 - 44,129,550 (-)NCBICelera
RGSC_v3.11243,400,118 - 43,423,920 (-)NCBI
Cytogenetic Map12q16NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The mitochondrial deubiquitinase USP30 opposes parkin-mediated mitophagy. Bingol B, etal., Nature. 2014 Jun 19;510(7505):370-5. doi: 10.1038/nature13418. Epub 2014 Jun 4.
2. The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications. Durcan TM and Fon EA, Genes Dev. 2015 May 15;29(10):989-99. doi: 10.1101/gad.262758.115.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:14715245   PMID:24513856   PMID:25621951  


Genomics

Comparative Map Data
Usp30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81248,161,905 - 48,215,878 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1248,161,908 - 48,215,968 (-)EnsemblGRCr8
mRatBN7.21242,501,345 - 42,555,311 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,501,348 - 42,555,616 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1243,668,550 - 43,692,334 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01244,282,141 - 44,305,925 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01243,342,658 - 43,366,442 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,262,663 - 48,316,580 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,262,658 - 48,316,722 (-)Ensemblrn6Rnor6.0
Rnor_5.01250,044,991 - 50,068,680 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41243,536,736 - 43,560,425 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1244,105,878 - 44,129,550 (-)NCBICelera
RGSC_v3.11243,400,118 - 43,423,920 (-)NCBI
Cytogenetic Map12q16NCBI
USP30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812109,023,089 - 109,088,023 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12109,023,089 - 109,088,023 (+)Ensemblhg38GRCh38
GRCh3712109,460,894 - 109,525,828 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612107,974,774 - 108,008,570 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3412107,953,110 - 107,986,902NCBI
Celera12109,114,313 - 109,149,755 (+)NCBICelera
Cytogenetic Map12q24.11NCBI
HuRef12106,508,557 - 106,544,000 (+)NCBIHuRef
CHM1_112109,458,035 - 109,493,484 (+)NCBICHM1_1
T2T-CHM13v2.012108,997,903 - 109,062,835 (+)NCBIT2T-CHM13v2.0
Usp30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,238,395 - 114,261,571 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5114,203,522 - 114,262,781 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385114,100,299 - 114,123,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,065,461 - 114,124,720 (+)Ensemblmm10GRCm38
MGSCv375114,550,342 - 114,572,933 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365114,361,332 - 114,383,923 (+)NCBIMGSCv36mm8
Celera5111,202,052 - 111,224,786 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.96NCBI
Usp30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545510,192,426 - 10,257,951 (+)Ensembl
ChiLan1.0NW_00495545510,234,779 - 10,257,959 (+)NCBIChiLan1.0ChiLan1.0
USP30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210117,118,330 - 117,153,807 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112117,114,728 - 117,150,205 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012106,629,106 - 106,664,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112110,022,959 - 110,058,341 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12110,022,959 - 110,058,335 (+)EnsemblpanPan2panpan1.1
USP30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,918,852 - 17,981,947 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,919,512 - 17,981,846 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2617,819,516 - 17,882,690 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02618,263,125 - 18,326,383 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2618,263,186 - 18,325,934 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12618,028,784 - 18,091,985 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02618,253,735 - 18,317,019 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02618,272,123 - 18,335,625 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Usp30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118144,573,496 - 144,649,361 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936769826,615 - 904,034 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936769874,188 - 902,690 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1441,766,254 - 41,818,918 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11441,765,220 - 41,818,937 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21444,332,394 - 44,391,610 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111104,254,923 - 104,292,373 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11104,255,012 - 104,290,273 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037140,811,135 - 140,845,734 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474712,184,297 - 12,250,687 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474712,219,139 - 12,248,614 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Usp30
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11639,845,271 - 39,869,261 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:834
Count of miRNA genes:292
Interacting mature miRNAs:387
Transcripts:ENSRNOT00000030891
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771850386405Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123776414551558799Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123370043251558799Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771849212240Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)124413955852308831Rat

Markers in Region
RH134542  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21242,501,659 - 42,501,839 (+)MAPPERmRatBN7.2
Rnor_6.01248,262,975 - 48,263,154NCBIRnor6.0
Rnor_5.01250,045,303 - 50,045,482UniSTSRnor5.0
RGSC_v3.41243,537,048 - 43,537,227UniSTSRGSC3.4
Celera1244,106,190 - 44,106,369UniSTS
Cytogenetic Map12q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000030891   ⟹   ENSRNOP00000034698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1248,161,908 - 48,185,597 (-)Ensembl
mRatBN7.2 Ensembl1242,501,348 - 42,525,037 (-)Ensembl
Rnor_6.0 Ensembl1248,262,663 - 48,286,352 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086231   ⟹   ENSRNOP00000072669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1248,161,908 - 48,215,968 (-)Ensembl
mRatBN7.2 Ensembl1242,501,348 - 42,555,616 (-)Ensembl
Rnor_6.0 Ensembl1248,262,658 - 48,316,722 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109684   ⟹   ENSRNOP00000077164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1248,163,079 - 48,185,597 (-)Ensembl
mRatBN7.2 Ensembl1242,502,519 - 42,525,037 (-)Ensembl
RefSeq Acc Id: NM_001107153   ⟹   NP_001100623
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81248,161,908 - 48,185,597 (-)NCBI
mRatBN7.21242,501,348 - 42,525,037 (-)NCBI
Rnor_6.01248,262,663 - 48,286,352 (-)NCBI
Rnor_5.01250,044,991 - 50,068,680 (-)NCBI
RGSC_v3.41243,536,736 - 43,560,425 (-)RGD
Celera1244,105,878 - 44,129,550 (-)RGD
Sequence:
RefSeq Acc Id: XM_017598353   ⟹   XP_017453842
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81248,161,905 - 48,215,874 (-)NCBI
mRatBN7.21242,501,345 - 42,555,311 (-)NCBI
Rnor_6.01248,264,111 - 48,316,580 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089523   ⟹   XP_038945451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81248,161,905 - 48,215,878 (-)NCBI
mRatBN7.21242,501,345 - 42,555,303 (-)NCBI
RefSeq Acc Id: XM_063271397   ⟹   XP_063127467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81248,161,905 - 48,185,595 (-)NCBI
RefSeq Acc Id: XM_063271398   ⟹   XP_063127468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81248,161,905 - 48,215,874 (-)NCBI
RefSeq Acc Id: XM_063271399   ⟹   XP_063127469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81248,161,905 - 48,185,595 (-)NCBI
RefSeq Acc Id: XM_063271400   ⟹   XP_063127470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81248,161,905 - 48,215,874 (-)NCBI
RefSeq Acc Id: XM_063271401   ⟹   XP_063127471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81248,161,905 - 48,215,874 (-)NCBI
RefSeq Acc Id: NP_001100623   ⟸   NM_001107153
- UniProtKB: D3ZPG5 (UniProtKB/Swiss-Prot),   A0A8I5Y9C9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453842   ⟸   XM_017598353
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K3K1 (UniProtKB/TrEMBL),   A0A8I5Y9C9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072669   ⟸   ENSRNOT00000086231
Ensembl Acc Id: ENSRNOP00000034698   ⟸   ENSRNOT00000030891
RefSeq Acc Id: XP_038945451   ⟸   XM_039089523
- Peptide Label: isoform X5
- UniProtKB: A0A8I5Y9C9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077164   ⟸   ENSRNOT00000109684
RefSeq Acc Id: XP_063127471   ⟸   XM_063271401
- Peptide Label: isoform X7
- UniProtKB: A0A8I5Y9C9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127468   ⟸   XM_063271398
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y9C9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127470   ⟸   XM_063271400
- Peptide Label: isoform X6
- UniProtKB: A0A8I5Y9C9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127467   ⟸   XM_063271397
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y9C9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127469   ⟸   XM_063271399
- Peptide Label: isoform X4
- UniProtKB: A0A8I5Y9C9 (UniProtKB/TrEMBL)
Protein Domains
USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZPG5-F1-model_v2 AlphaFold D3ZPG5 1-517 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698716
Promoter ID:EPDNEW_R9240
Type:initiation region
Name:Usp30_1
Description:ubiquitin specific peptidase 30
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01248,286,318 - 48,286,378EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307949 AgrOrtholog
BioCyc Gene G2FUF-18938 BioCyc
Ensembl Genes ENSRNOG00000028556 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000030891 ENTREZGENE
  ENSRNOT00000030891.5 UniProtKB/Swiss-Prot
  ENSRNOT00000086231 ENTREZGENE
  ENSRNOT00000109684 ENTREZGENE
Gene3D-CATH Cysteine proteinases UniProtKB/Swiss-Prot
InterPro Papain-like_cys_pep_sf UniProtKB/Swiss-Prot
  Peptidase_C19 UniProtKB/Swiss-Prot
  Peptidase_C19_UCH UniProtKB/Swiss-Prot
  USP_CS UniProtKB/Swiss-Prot
  USP_dom UniProtKB/Swiss-Prot
KEGG Report rno:304579 UniProtKB/Swiss-Prot
NCBI Gene 304579 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/Swiss-Prot
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 30 UniProtKB/Swiss-Prot
Pfam UCH UniProtKB/Swiss-Prot
PhenoGen Usp30 PhenoGen
PROSITE USP_1 UniProtKB/Swiss-Prot
  USP_2 UniProtKB/Swiss-Prot
  USP_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000028556 RatGTEx
Superfamily-SCOP SSF54001 UniProtKB/Swiss-Prot
UniProt A0A0G2K3K1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y9C9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPG5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Usp30  ubiquitin specific peptidase 30  Usp30_predicted  ubiquitin specific protease 30 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Usp30_predicted  ubiquitin specific protease 30 (predicted)      Symbol and Name status set to approved 70820 APPROVED