Cbarp (CACN subunit beta associated regulatory protein) - Rat Genome Database

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Gene: Cbarp (CACN subunit beta associated regulatory protein) Rattus norvegicus
Analyze
Symbol: Cbarp
Name: CACN subunit beta associated regulatory protein
RGD ID: 1307185
Description: Predicted to enable transmembrane transporter binding activity. Involved in negative regulation of voltage-gated calcium channel activity. Located in secretory granule. Orthologous to human CBARP (CACN subunit beta associated regulatory protein); INTERACTS WITH 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CACN beta subunit associated regulatory protein; calcium channel, voltage-dependent, beta subunit associated regulatory protein; Dos; downstream of Stk11; LOC314622; MGC189449
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,217,314 - 10,225,855 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl710,217,328 - 10,225,854 (+)EnsemblGRCr8
mRatBN7.279,566,637 - 9,575,204 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,566,364 - 9,575,204 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx712,449,657 - 12,458,156 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,324,996 - 14,333,495 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,186,091 - 12,194,592 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,433,422 - 12,441,048 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,433,933 - 12,441,048 (+)Ensemblrn6Rnor6.0
Rnor_5.0712,603,527 - 12,611,153 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4711,079,431 - 11,087,057 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera77,743,241 - 7,750,842 (+)NCBICelera
RGSC_v3.1711,079,064 - 11,086,662 (+)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
growth cone  (IEA,ISO)
plasma membrane  (IBA,IEA,ISO)
secretory granule  (IDA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. BARP suppresses voltage-gated calcium channel activity and Ca2+-evoked exocytosis. Beguin P, etal., J Cell Biol. 2014 Apr 28;205(2):233-49. doi: 10.1083/jcb.201304101. Epub 2014 Apr 21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:28131823  


Genomics

Comparative Map Data
Cbarp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,217,314 - 10,225,855 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl710,217,328 - 10,225,854 (+)EnsemblGRCr8
mRatBN7.279,566,637 - 9,575,204 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,566,364 - 9,575,204 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx712,449,657 - 12,458,156 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,324,996 - 14,333,495 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,186,091 - 12,194,592 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,433,422 - 12,441,048 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,433,933 - 12,441,048 (+)Ensemblrn6Rnor6.0
Rnor_5.0712,603,527 - 12,611,153 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4711,079,431 - 11,087,057 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera77,743,241 - 7,750,842 (+)NCBICelera
RGSC_v3.1711,079,064 - 11,086,662 (+)NCBI
Cytogenetic Map7q11NCBI
CBARP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,228,287 - 1,238,502 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,228,284 - 1,239,465 (-)Ensemblhg38GRCh38
GRCh37191,228,286 - 1,238,004 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36191,180,947 - 1,188,990 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34191,180,954 - 1,188,841NCBI
Celera191,164,180 - 1,172,223 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef191,005,343 - 1,039,838 (-)NCBIHuRef
CHM1_1191,229,860 - 1,237,926 (-)NCBICHM1_1
T2T-CHM13v2.0191,196,845 - 1,207,060 (-)NCBIT2T-CHM13v2.0
Cbarp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,966,268 - 79,976,189 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,966,285 - 79,976,669 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381080,130,434 - 80,140,355 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,130,451 - 80,140,835 (-)Ensemblmm10GRCm38
MGSCv371079,593,179 - 79,598,128 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361079,593,179 - 79,598,128 (-)NCBIMGSCv36mm8
Celera1081,145,266 - 81,150,215 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Cbarp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,671,726 - 6,677,205 (+)Ensembl
ChiLan1.0NW_0049554956,671,719 - 6,678,338 (+)NCBIChiLan1.0ChiLan1.0
CBARP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,570,337 - 5,580,431 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,807,138 - 4,817,065 (-)NCBINHGRI_mPanPan1
PanPan1.1191,212,854 - 1,220,108 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl191,212,854 - 1,220,104 (-)EnsemblpanPan2panpan1.1
CBARP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,554,162 - 57,559,126 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,554,032 - 57,559,612 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2057,352,590 - 57,361,543 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02058,292,499 - 58,301,436 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,294,280 - 58,301,173 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,348,311 - 57,356,988 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,827,591 - 57,836,230 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,030,594 - 58,039,504 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cbarp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,216,615 - 217,233,911 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588601,521 - 607,175 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936588601,108 - 607,823 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBARP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,220,972 - 77,230,058 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1277,220,790 - 77,230,418 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,228,094 - 77,230,411 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,823,483 - 77,831,001 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CBARP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16999,327 - 1,006,632 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660817,857,295 - 7,864,976 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cbarp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,437,564 - 7,443,353 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248287,435,633 - 7,444,483 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cbarp
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11154,736,446 - 154,744,835 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cbarp
161 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:184
Count of miRNA genes:142
Interacting mature miRNAs:151
Transcripts:ENSRNOT00000060690
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat

Markers in Region
D7Got1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,565,207 - 9,565,291 (+)MAPPERmRatBN7.2
Rnor_6.0712,431,409 - 12,431,492NCBIRnor6.0
Rnor_5.0712,601,514 - 12,601,597UniSTSRnor5.0
RGSC_v3.4711,077,417 - 11,077,501RGDRGSC3.4
RGSC_v3.4711,077,418 - 11,077,501UniSTSRGSC3.4
Celera77,741,231 - 7,741,314UniSTS
RGSC_v3.1711,077,418 - 11,077,501RGD
RH 3.4 Map734.6UniSTS
RH 3.4 Map734.6RGD
RH 2.0 Map70.0RGD
Cytogenetic Map7q11UniSTS
Stk11  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,568,257 - 9,568,385 (+)MAPPERmRatBN7.2
Rnor_6.0712,434,458 - 12,434,585NCBIRnor6.0
Rnor_5.0712,604,563 - 12,604,690UniSTSRnor5.0
RGSC_v3.4711,080,467 - 11,080,594UniSTSRGSC3.4
Celera77,744,256 - 7,744,383UniSTS
Cytogenetic Map7q11UniSTS
BE110397  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.279,568,464 - 9,568,619 (+)MAPPERmRatBN7.2
Rnor_6.0712,434,665 - 12,434,819NCBIRnor6.0
Rnor_5.0712,604,770 - 12,604,924UniSTSRnor5.0
RGSC_v3.4711,080,674 - 11,080,828UniSTSRGSC3.4
Celera77,744,463 - 7,744,617UniSTS
RH 3.4 Map741.1UniSTS
Cytogenetic Map7q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 67 160 90 89 58 91 58 6 353 190 9 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000060690   ⟹   ENSRNOP00000057421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl710,217,328 - 10,225,854 (+)Ensembl
mRatBN7.2 Ensembl79,566,364 - 9,575,204 (+)Ensembl
Rnor_6.0 Ensembl712,433,933 - 12,441,048 (+)Ensembl
RefSeq Acc Id: NM_001108070   ⟹   NP_001101540
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,218,169 - 10,225,855 (+)NCBI
mRatBN7.279,567,515 - 9,575,204 (+)NCBI
Rnor_6.0712,433,422 - 12,441,048 (+)NCBI
Rnor_5.0712,603,527 - 12,611,153 (+)NCBI
RGSC_v3.4711,079,431 - 11,087,057 (+)RGD
Celera77,743,241 - 7,750,842 (+)RGD
Sequence:
RefSeq Acc Id: NM_001388507   ⟹   NP_001375436
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,217,353 - 10,225,855 (+)NCBI
mRatBN7.279,566,699 - 9,575,204 (+)NCBI
RefSeq Acc Id: XM_039078983   ⟹   XP_038934911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,218,308 - 10,225,855 (+)NCBI
mRatBN7.279,566,960 - 9,575,204 (+)NCBI
RefSeq Acc Id: XM_039078984   ⟹   XP_038934912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,217,314 - 10,225,855 (+)NCBI
mRatBN7.279,566,637 - 9,575,204 (+)NCBI
RefSeq Acc Id: XM_039078985   ⟹   XP_038934913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,218,308 - 10,224,280 (+)NCBI
mRatBN7.279,566,960 - 9,573,625 (+)NCBI
RefSeq Acc Id: NP_001101540   ⟸   NM_001108070
- UniProtKB: A6K8Q7 (UniProtKB/TrEMBL),   B5DFH0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000057421   ⟸   ENSRNOT00000060690
RefSeq Acc Id: XP_038934912   ⟸   XM_039078984
- Peptide Label: isoform X2
- UniProtKB: F1MAS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001375436   ⟸   NM_001388507
- UniProtKB: A6K8Q7 (UniProtKB/TrEMBL),   B5DFH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934911   ⟸   XM_039078983
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038934913   ⟸   XM_039078985
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MAS1-F1-model_v2 AlphaFold F1MAS1 1-431 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307185 AgrOrtholog
BioCyc Gene G2FUF-34917 BioCyc
Ensembl Genes ENSRNOG00000024349 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000060690 ENTREZGENE
  ENSRNOT00000060690.6 UniProtKB/TrEMBL
InterPro CBARP UniProtKB/TrEMBL
KEGG Report rno:314622 UniProtKB/TrEMBL
NCBI Gene 314622 ENTREZGENE
PANTHER PTHR28597 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT-ASSOCIATED REGULATORY PROTEIN UniProtKB/TrEMBL
PhenoGen Cbarp PhenoGen
RatGTEx ENSRNOG00000024349 RatGTEx
UniProt A6K8Q7 ENTREZGENE, UniProtKB/TrEMBL
  B5DFH0 ENTREZGENE, UniProtKB/TrEMBL
  F1MAS1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-03 Cbarp  CACN subunit beta associated regulatory protein  Cbarp  CACN beta subunit associated regulatory protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-11 Cbarp  CACN beta subunit associated regulatory protein  Cbarp  calcium channel, voltage-dependent, beta subunit associated regulatory protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-22 Cbarp  calcium channel, voltage-dependent, beta subunit associated regulatory protein  Dos  downstream of Stk11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Dos  downstream of Stk11   Dos_predicted  downstream of Stk11 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Dos_predicted  downstream of Stk11 (predicted)      Symbol and Name status set to approved 70820 APPROVED