Ankrd27 (ankyrin repeat domain 27) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ankrd27 (ankyrin repeat domain 27) Rattus norvegicus
Analyze
Symbol: Ankrd27
Name: ankyrin repeat domain 27
RGD ID: 1307106
Description: Enables SNARE binding activity. Involved in positive regulation of neuron projection development. Predicted to be located in melanosome. Predicted to be active in cytoplasmic vesicle; neuron projection; and plasma membrane. Human ortholog(s) of this gene implicated in eosinophilic esophagitis. Orthologous to human ANKRD27 (ankyrin repeat domain 27); PARTICIPATES IN retromer-mediated pathway; INTERACTS WITH 2,4-dinitrotoluene; 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ankyrin repeat domain 27 (VPS9 domain); ankyrin repeat domain-containing protein 27; ankyrin repeat domain-containing protein 27-like; LOC100912309; LOC361555
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8197,387,997 - 97,440,501 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl197,388,099 - 97,440,501 (+)EnsemblGRCr8
mRatBN7.2188,251,216 - 88,303,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl188,251,226 - 88,303,615 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx193,656,209 - 93,708,456 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01102,122,159 - 102,174,406 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0195,414,492 - 95,466,742 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,857,048 - 91,958,763 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,857,057 - 91,958,763 (+)Ensemblrn6Rnor6.0
Rnor_5.0192,984,820 - 93,090,728 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4188,117,683 - 88,139,762 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera182,601,058 - 82,651,370 (+)NCBICelera
RGSC_v3.1188,195,782 - 88,218,272 (+)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasmic vesicle  (IEA)
cytoplasmic vesicle membrane  (IEA)
early endosome  (IBA,IEA,ISO)
endomembrane system  (IEA)
late endosome  (IBA,IEA,ISO)
lysosome  (IEA,ISO)
melanosome  (IEA,ISO)
neuron projection  (IBA,IEA,ISO)
plasma membrane  (IBA,IEA,ISO)
transport vesicle  (IBA,IEA,ISO)
tubular endosome  (IBA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Role of Varp, a Rab21 exchange factor and TI-VAMP/VAMP7 partner, in neurite growth. Burgo A, etal., EMBO Rep. 2009 Oct;10(10):1117-24. doi: 10.1038/embor.2009.186. Epub 2009 Sep 11.
2. Retromer and sorting nexins in endosomal sorting. Gallon M and Cullen PJ, Biochem Soc Trans. 2015 Feb;43(1):33-47. doi: 10.1042/BST20140290.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. GWAS identifies four novel eosinophilic esophagitis loci. Sleiman PM, etal., Nat Commun. 2014 Nov 19;5:5593. doi: 10.1038/ncomms6593.
Additional References at PubMed
PMID:16525121   PMID:19403694   PMID:19946888   PMID:21187829   PMID:22171327   PMID:24856514  


Genomics

Comparative Map Data
Ankrd27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8197,387,997 - 97,440,501 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl197,388,099 - 97,440,501 (+)EnsemblGRCr8
mRatBN7.2188,251,216 - 88,303,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl188,251,226 - 88,303,615 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx193,656,209 - 93,708,456 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01102,122,159 - 102,174,406 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0195,414,492 - 95,466,742 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,857,048 - 91,958,763 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,857,057 - 91,958,763 (+)Ensemblrn6Rnor6.0
Rnor_5.0192,984,820 - 93,090,728 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4188,117,683 - 88,139,762 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera182,601,058 - 82,651,370 (+)NCBICelera
RGSC_v3.1188,195,782 - 88,218,272 (+)NCBI
Cytogenetic Map1q21NCBI
ANKRD27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381932,597,006 - 32,675,180 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1932,597,000 - 32,676,597 (-)Ensemblhg38GRCh38
GRCh371933,087,912 - 33,166,086 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361937,779,747 - 37,857,942 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341937,779,753 - 37,857,919NCBI
Celera1929,781,556 - 29,859,734 (-)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1929,590,946 - 29,669,349 (-)NCBIHuRef
CHM1_11933,088,999 - 33,167,383 (-)NCBICHM1_1
T2T-CHM13v2.01935,115,771 - 35,193,912 (-)NCBIT2T-CHM13v2.0
Ankrd27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39735,285,652 - 35,338,662 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl735,285,669 - 35,338,651 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38735,586,226 - 35,639,237 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,586,244 - 35,639,226 (+)Ensemblmm10GRCm38
MGSCv37736,371,266 - 36,424,256 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36735,295,013 - 35,349,386 (+)NCBIMGSCv36mm8
Celera730,714,999 - 30,784,611 (+)NCBICelera
Cytogenetic Map7B2NCBI
cM Map721.37NCBI
Ankrd27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554685,324,858 - 5,363,778 (+)Ensembl
ChiLan1.0NW_0049554685,314,779 - 5,364,925 (+)NCBIChiLan1.0ChiLan1.0
ANKRD27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22038,569,579 - 38,647,248 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11940,566,380 - 40,644,045 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01929,516,853 - 29,594,519 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11938,264,485 - 38,342,604 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1938,264,485 - 38,342,604 (-)EnsemblpanPan2panpan1.1
ANKRD27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11119,325,132 - 119,377,266 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1119,325,873 - 119,376,948 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1118,723,450 - 118,776,876 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01119,924,453 - 119,978,628 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,924,441 - 119,978,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,487,737 - 119,541,456 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01119,107,807 - 119,161,198 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01120,167,782 - 120,221,482 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ankrd27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093498,548,186 - 8,601,489 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365703,044,565 - 3,098,097 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365703,044,565 - 3,097,692 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl642,501,165 - 42,559,912 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1642,501,167 - 42,559,926 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,010,248 - 38,169,868 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1627,645,474 - 27,724,829 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl627,644,597 - 27,724,819 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660735,220,619 - 5,300,789 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247947,494,275 - 7,544,671 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ankrd27
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12163,025,733 - 163,077,616 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ankrd27
261 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:234
Count of miRNA genes:103
Interacting mature miRNAs:112
Transcripts:ENSRNOT00000017669, ENSRNOT00000071337, ENSRNOT00000072931, ENSRNOT00000074926
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000077993   ⟹   ENSRNOP00000069603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl197,388,109 - 97,440,499 (+)Ensembl
mRatBN7.2 Ensembl188,251,227 - 88,303,610 (+)Ensembl
Rnor_6.0 Ensembl191,857,057 - 91,958,755 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081465   ⟹   ENSRNOP00000074354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl197,388,117 - 97,440,497 (+)Ensembl
mRatBN7.2 Ensembl188,251,227 - 88,303,610 (+)Ensembl
Rnor_6.0 Ensembl191,857,070 - 91,958,763 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105190   ⟹   ENSRNOP00000080076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl197,388,375 - 97,440,501 (+)Ensembl
mRatBN7.2 Ensembl188,251,240 - 88,303,615 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118935   ⟹   ENSRNOP00000096440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl197,388,099 - 97,402,549 (+)Ensembl
mRatBN7.2 Ensembl188,251,226 - 88,265,661 (+)Ensembl
RefSeq Acc Id: NM_001271264   ⟹   NP_001258193
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8197,388,126 - 97,440,501 (+)NCBI
mRatBN7.2188,251,238 - 88,303,615 (+)NCBI
Rnor_6.0191,857,070 - 91,958,763 (+)NCBI
Rnor_5.0192,984,820 - 93,090,728 (+)NCBI
Celera182,601,058 - 82,651,370 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589356   ⟹   XP_017444845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8197,387,997 - 97,440,501 (+)NCBI
mRatBN7.2188,251,216 - 88,303,615 (+)NCBI
Rnor_6.0191,857,048 - 91,905,128 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589358   ⟹   XP_017444847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8197,400,687 - 97,440,501 (+)NCBI
mRatBN7.2188,256,620 - 88,303,615 (+)NCBI
Rnor_6.0191,862,500 - 91,905,128 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039082076   ⟹   XP_038938004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8197,396,255 - 97,440,501 (+)NCBI
mRatBN7.2188,260,240 - 88,303,615 (+)NCBI
RefSeq Acc Id: XM_039082080   ⟹   XP_038938008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8197,396,255 - 97,440,501 (+)NCBI
mRatBN7.2188,260,240 - 88,303,615 (+)NCBI
RefSeq Acc Id: XM_063266553   ⟹   XP_063122623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8197,388,082 - 97,440,501 (+)NCBI
RefSeq Acc Id: NP_001258193   ⟸   NM_001271264
- UniProtKB: A0A0G2K7U7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444845   ⟸   XM_017589356
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K7U7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444847   ⟸   XM_017589358
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZNY3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069603   ⟸   ENSRNOT00000077993
Ensembl Acc Id: ENSRNOP00000074354   ⟸   ENSRNOT00000081465
RefSeq Acc Id: XP_038938008   ⟸   XM_039082080
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZNY3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938004   ⟸   XM_039082076
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZNY3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080076   ⟸   ENSRNOT00000105190
Ensembl Acc Id: ENSRNOP00000096440   ⟸   ENSRNOT00000118935
RefSeq Acc Id: XP_063122623   ⟸   XM_063266553
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K7U7 (UniProtKB/TrEMBL)
Protein Domains
VPS9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JVS9-F1-model_v2 AlphaFold A0A0G2JVS9 1-1055 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689976
Promoter ID:EPDNEW_R497
Type:initiation region
Name:Ankrd27_1
Description:ankyrin repeat domain 27
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0191,857,087 - 91,857,147EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307106 AgrOrtholog
BioCyc Gene G2FUF-59967 BioCyc
Ensembl Genes ENSRNOG00000052814 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000077993 ENTREZGENE
  ENSRNOT00000077993.3 UniProtKB/TrEMBL
  ENSRNOT00000081465 ENTREZGENE
  ENSRNOT00000081465.3 UniProtKB/TrEMBL
  ENSRNOT00000105190.2 UniProtKB/TrEMBL
  ENSRNOT00000118935.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1050.80 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  UPF0507/Ank_repeat_27 UniProtKB/TrEMBL
  VPS9 UniProtKB/TrEMBL
  VPS9_dom_sf UniProtKB/TrEMBL
NCBI Gene 361555 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27 UniProtKB/TrEMBL
  ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ank_5 UniProtKB/TrEMBL
  VPS9 UniProtKB/TrEMBL
PhenoGen Ankrd27 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  VPS9 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000052814 RatGTEx
SMART ANK UniProtKB/TrEMBL
  VPS9 UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  SSF109993 UniProtKB/TrEMBL
UniProt A0A0G2JVS9_RAT UniProtKB/TrEMBL
  A0A0G2K7U7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6APD4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ankrd27  ankyrin repeat domain 27  LOC100912309  ankyrin repeat domain-containing protein 27-like  Data merged from RGD:6487705 737654 PROVISIONAL
2015-11-25 Ankrd27  ankyrin repeat domain 27  Ankrd27  ankyrin repeat domain 27 (VPS9 domain)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100912309  ankyrin repeat domain-containing protein 27-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Ankrd27  ankyrin repeat domain 27 (VPS9 domain)   Ankrd27_predicted  ankyrin repeat domain 27 (VPS9 domain) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ankrd27_predicted  ankyrin repeat domain 27 (VPS9 domain) (predicted)      Symbol and Name status set to approved 70820 APPROVED