Strn4 (striatin 4) - Rat Genome Database

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Gene: Strn4 (striatin 4) Rattus norvegicus
Analyze
Symbol: Strn4
Name: striatin 4
RGD ID: 1307030
Description: Enables protein domain specific binding activity. Involved in regulation of modification of postsynaptic structure. Located in dendritic spine. Part of protein-containing complex. Is active in GABA-ergic synapse; glutamatergic synapse; and postsynapse. Orthologous to human STRN4 (striatin 4); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC308392; striatin, calmodulin binding protein 4; striatin-4; zinedin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,614,193 - 86,639,959 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl186,610,210 - 86,639,955 (+)EnsemblGRCr8
mRatBN7.2177,482,267 - 77,511,862 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,482,094 - 77,511,858 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx182,866,257 - 82,892,028 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,430,301 - 91,456,072 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,621,348 - 84,647,119 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,739,930 - 78,765,696 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,735,678 - 78,765,692 (+)Ensemblrn6Rnor6.0
Rnor_5.0179,983,369 - 80,012,891 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4177,140,308 - 77,166,074 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera171,971,158 - 71,996,922 (+)NCBICelera
RGSC_v3.1177,218,418 - 77,244,183 (+)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Molecular cloning and characterization of phocein, a protein found from the Golgi complex to dendritic spines. Baillat G, etal., Mol Biol Cell 2001 Mar;12(3):663-73.
2. Distribution of zinedin in the rat brain. Benoist M, etal., J Neurochem. 2008 Jul;106(2):969-77. Epub 2008 May 2.
3. Targeting of proteins of the striatin family to dendritic spines: role of the coiled-coil domain. Gaillard S, etal., Traffic. 2006 Jan;7(1):74-84.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Determination of dendritic spine morphology by the striatin scaffold protein STRN4 through interaction with the phosphatase PP2A. Lin L, etal., J Biol Chem. 2017 Jun 9;292(23):9451-9464. doi: 10.1074/jbc.M116.772442. Epub 2017 Apr 25.
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8889548   PMID:11707266   PMID:12477932   PMID:18502210   PMID:18782753  


Genomics

Comparative Map Data
Strn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8186,614,193 - 86,639,959 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl186,610,210 - 86,639,955 (+)EnsemblGRCr8
mRatBN7.2177,482,267 - 77,511,862 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,482,094 - 77,511,858 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx182,866,257 - 82,892,028 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,430,301 - 91,456,072 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0184,621,348 - 84,647,119 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,739,930 - 78,765,696 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,735,678 - 78,765,692 (+)Ensemblrn6Rnor6.0
Rnor_5.0179,983,369 - 80,012,891 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4177,140,308 - 77,166,074 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera171,971,158 - 71,996,922 (+)NCBICelera
RGSC_v3.1177,218,418 - 77,244,183 (+)NCBI
Cytogenetic Map1q21NCBI
STRN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381946,719,511 - 46,746,450 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1946,719,511 - 46,746,994 (-)Ensemblhg38GRCh38
GRCh371947,222,768 - 47,249,707 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,914,608 - 51,941,560 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341951,914,609 - 51,941,527NCBI
Celera1944,026,298 - 44,053,250 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1943,647,696 - 43,674,467 (-)NCBIHuRef
CHM1_11947,224,668 - 47,251,617 (-)NCBICHM1_1
T2T-CHM13v2.01949,545,101 - 49,572,026 (-)NCBIT2T-CHM13v2.0
Strn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,549,814 - 16,574,856 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl716,549,814 - 16,574,856 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38716,815,889 - 16,840,931 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,815,889 - 16,840,931 (+)Ensemblmm10GRCm38
MGSCv37717,401,238 - 17,426,280 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36715,974,411 - 15,999,425 (+)NCBIMGSCv36mm8
Celera714,013,892 - 14,038,921 (+)NCBICelera
Cytogenetic Map7A2NCBI
cM Map79.15NCBI
Strn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574752,848 - 771,666 (-)Ensembl
ChiLan1.0NW_004955574752,848 - 771,664 (-)NCBIChiLan1.0ChiLan1.0
STRN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22052,869,300 - 52,896,212 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11954,740,168 - 54,767,087 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01943,711,834 - 43,738,742 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11952,240,880 - 52,260,241 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,240,880 - 52,260,241 (-)EnsemblpanPan2panpan1.1
STRN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,176,955 - 109,203,875 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,176,983 - 109,202,591 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1108,656,782 - 108,683,677 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01109,703,457 - 109,730,350 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1109,703,016 - 109,730,347 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11109,380,580 - 109,407,472 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,014,768 - 109,041,665 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,883,463 - 109,910,358 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Strn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934918,935,553 - 18,953,098 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936664553,878 - 570,732 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936664553,682 - 574,240 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STRN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,601,938 - 52,627,902 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1652,601,934 - 52,627,910 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,922,599 - 47,948,577 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STRN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,073,924 - 40,100,822 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl640,075,007 - 40,100,885 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607319,786,014 - 19,812,907 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Strn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,858,123 - 6,883,514 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248326,858,107 - 6,883,514 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Strn4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12172,251,724 - 172,276,833 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Strn4
196 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:76
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000021976
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat

Markers in Region
D1Rat259  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8186,622,262 - 86,622,466 (+)Marker Load Pipeline
mRatBN7.2177,494,165 - 77,494,369 (+)MAPPERmRatBN7.2
Rnor_6.0178,748,000 - 78,748,203NCBIRnor6.0
Rnor_5.0179,995,195 - 79,995,398UniSTSRnor5.0
RGSC_v3.4177,148,378 - 77,148,581UniSTSRGSC3.4
RGSC_v3.4177,148,379 - 77,148,581RGDRGSC3.4
Celera171,979,226 - 71,979,429UniSTS
RGSC_v3.1177,226,490 - 77,226,692RGD
SHRSP x BN Map140.2499RGD
SHRSP x BN Map140.2499UniSTS
Cytogenetic Map1q21UniSTS
BI273879  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2177,511,558 - 77,511,715 (+)MAPPERmRatBN7.2
Rnor_6.0178,765,393 - 78,765,549NCBIRnor6.0
Rnor_5.0180,012,588 - 80,012,744UniSTSRnor5.0
RGSC_v3.4177,165,771 - 77,165,927UniSTSRGSC3.4
Celera171,996,619 - 71,996,775UniSTS
RH 3.4 Map1805.0UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021976   ⟹   ENSRNOP00000021976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl177,486,096 - 77,511,858 (+)Ensembl
Rnor_6.0 Ensembl178,739,930 - 78,765,692 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089715   ⟹   ENSRNOP00000070127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl186,610,210 - 86,639,955 (+)Ensembl
mRatBN7.2 Ensembl177,482,094 - 77,511,858 (+)Ensembl
Rnor_6.0 Ensembl178,735,678 - 78,764,912 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103486   ⟹   ENSRNOP00000095692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl186,614,623 - 86,639,955 (+)Ensembl
mRatBN7.2 Ensembl177,491,576 - 77,511,858 (+)Ensembl
RefSeq Acc Id: NM_001107480   ⟹   NP_001100950
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,614,193 - 86,639,959 (+)NCBI
mRatBN7.2177,486,096 - 77,511,862 (+)NCBI
Rnor_6.0178,739,930 - 78,765,696 (+)NCBI
Rnor_5.0179,983,369 - 80,012,891 (+)NCBI
RGSC_v3.4177,140,308 - 77,166,074 (+)RGD
Celera171,971,158 - 71,996,922 (+)RGD
Sequence:
RefSeq Acc Id: NM_001161809   ⟹   NP_001155281
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,614,193 - 86,639,959 (+)NCBI
mRatBN7.2177,486,096 - 77,511,862 (+)NCBI
Rnor_6.0178,739,930 - 78,765,696 (+)NCBI
Rnor_5.0179,983,369 - 80,012,891 (+)NCBI
RGSC_v3.4177,140,308 - 77,166,074 (+)RGD
Celera171,971,158 - 71,996,922 (+)RGD
Sequence:
RefSeq Acc Id: XM_039111193   ⟹   XP_038967121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,614,601 - 86,632,198 (+)NCBI
mRatBN7.2177,486,499 - 77,504,187 (+)NCBI
RefSeq Acc Id: XM_063261295   ⟹   XP_063117365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,614,602 - 86,639,957 (+)NCBI
RefSeq Acc Id: XR_010051831
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8186,614,601 - 86,632,198 (+)NCBI
RefSeq Acc Id: NP_001100950   ⟸   NM_001107480
- Peptide Label: isoform 1
- UniProtKB: F1M6V8 (UniProtKB/TrEMBL),   A0A8I6AK86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155281   ⟸   NM_001161809
- Peptide Label: isoform 2
- UniProtKB: A0A8I6AK86 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021976   ⟸   ENSRNOT00000021976
Ensembl Acc Id: ENSRNOP00000070127   ⟸   ENSRNOT00000089715
RefSeq Acc Id: XP_038967121   ⟸   XM_039111193
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000095692   ⟸   ENSRNOT00000103486
RefSeq Acc Id: XP_063117365   ⟸   XM_063261295
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AK86 (UniProtKB/TrEMBL),   F1M6V8 (UniProtKB/TrEMBL)
Protein Domains
Striatin N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M6V8-F1-model_v2 AlphaFold F1M6V8 1-759 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689743
Promoter ID:EPDNEW_R263
Type:single initiation site
Name:Strn4_2
Description:striatin 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R264  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0178,735,653 - 78,735,713EPDNEW
RGD ID:13689739
Promoter ID:EPDNEW_R264
Type:initiation region
Name:Strn4_1
Description:striatin 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R263  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0178,740,351 - 78,740,411EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307030 AgrOrtholog
BioCyc Gene G2FUF-60593 BioCyc
Ensembl Genes ENSRNOG00000016145 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000089715 ENTREZGENE
  ENSRNOT00000089715.3 UniProtKB/TrEMBL
  ENSRNOT00000103486 ENTREZGENE
  ENSRNOT00000103486.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.300 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  Striatin_N UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WD_repeat_striatin UniProtKB/TrEMBL
NCBI Gene 308392 ENTREZGENE
PANTHER STRIATIN UniProtKB/TrEMBL
  STRIATIN-4 UniProtKB/TrEMBL
Pfam Striatin UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Strn4 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016145 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A0G2JX43_RAT UniProtKB/TrEMBL
  A0A8I6AK86 ENTREZGENE, UniProtKB/TrEMBL
  B5DF70_RAT UniProtKB/TrEMBL
  F1M6V8 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 Strn4  striatin 4  Strn4  striatin, calmodulin binding protein 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Strn4  striatin, calmodulin binding protein 4   Strn4_predicted  striatin, calmodulin binding protein 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Strn4_predicted  striatin, calmodulin binding protein 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED