Advanced Search (OLGA)

Gene: Cfap298 (cilia and flagella associated protein 298) Rattus norvegicus

Analyze

Symbol:

Cfap298

Name:

cilia and flagella associated protein 298

RGD ID:

1306954

Description:

Predicted to be involved in cilium assembly and regulation of cilium movement. Located in cytosol. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 26. Orthologous to human CFAP298 (cilia and flagella associated protein 298); INTERACTS WITH acetamide; bisphenol A; chlormequat chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cilia- and flagella-associated protein 298; hypothetical protein LOC288269; LOC288269; MGC105532; RGD1306954; similar to RIKEN cDNA 1110004E09; uncharacterized protein LOC288269; UPF0769 protein C21orf59 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	43,667,996 - 43,678,049 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	43,668,014 - 43,677,382 (-)	Ensembl				GRCr8
mRatBN7.2	11	30,181,916 - 30,191,302 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,181,905 - 30,191,346 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	38,868,697 - 38,878,058 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	31,540,122 - 31,549,483 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	30,714,602 - 30,723,965 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	31,094,103 - 31,103,487 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	31,094,084 - 31,103,520 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	34,705,577 - 34,714,961 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	30,910,153 - 30,919,537 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	29,849,218 - 29,858,582 (-)	NCBI		Celera
RGSC_v3.1	11	30,910,063 - 30,919,444 (-)	NCBI
Cytogenetic Map	11	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

primary ciliary dyskinesia 26 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrylamide (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

chlordecone (ISO)

chlormequat chloride (EXP)

copper(II) sulfate (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

fulvestrant (ISO)

leflunomide (EXP)

nefazodone (EXP)

nitrates (ISO)

ozone (ISO)

potassium chromate (ISO)

quercetin (ISO)

quercitrin (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (IEA,ISO)

regulation of cilium movement (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IDA,IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Zebrafish Ciliopathy Screen Plus Human Mutational Analysis Identifies C21orf59 and CCDC65 Defects as Causing Primary Ciliary Dyskinesia.	Austin-Tse C, etal., Am J Hum Genet. 2013 Oct 3;93(4):672-86. doi: 10.1016/j.ajhg.2013.08.015.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16780588

Genomics

Comparative Map Data

Cfap298
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	43,667,996 - 43,678,049 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	43,668,014 - 43,677,382 (-)	Ensembl				GRCr8
mRatBN7.2	11	30,181,916 - 30,191,302 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,181,905 - 30,191,346 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	38,868,697 - 38,878,058 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	31,540,122 - 31,549,483 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	30,714,602 - 30,723,965 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	31,094,103 - 31,103,487 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	31,094,084 - 31,103,520 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	34,705,577 - 34,714,961 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	30,910,153 - 30,919,537 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	29,849,218 - 29,858,582 (-)	NCBI		Celera
RGSC_v3.1	11	30,910,063 - 30,919,444 (-)	NCBI
Cytogenetic Map	11	q11	NCBI

CFAP298
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	32,599,354 - 32,612,377 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	32,592,079 - 32,612,845 (-)	Ensembl			hg38	GRCh38
GRCh37	21	33,971,664 - 33,984,687 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	32,895,966 - 32,906,537 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	21	32,895,979 - 32,906,537	NCBI
Celera	21	19,157,614 - 19,168,548 (-)	NCBI		Celera
Cytogenetic Map	21	q22.11	NCBI
HuRef	21	19,383,353 - 19,394,289 (-)	NCBI		HuRef
CHM1_1	21	33,535,638 - 33,546,572 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	30,965,355 - 30,978,378 (-)	NCBI		T2T-CHM13v2.0

Cfap298
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	90,721,178 - 90,731,737 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	90,722,697 - 90,732,002 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	90,925,811 - 90,934,849 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	90,925,809 - 90,935,114 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	90,926,056 - 90,935,094 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	90,814,692 - 90,823,672 (-)	NCBI		MGSCv36	mm8
Celera	16	92,007,683 - 92,016,703 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	52.17	NCBI

Cfap298
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	32,076,507 - 32,089,307 (-)	Ensembl
ChiLan1.0	NW_004955407	32,076,670 - 32,089,307 (-)	NCBI	ChiLan1.0	ChiLan1.0

CFAP298
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	28,694,642 - 28,732,677 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	23,554,599 - 23,592,594 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	18,944,205 - 18,982,229 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	32,347,675 - 32,360,658 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

CFAP298
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	27,296,841 - 27,305,941 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	27,286,376 - 27,305,608 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	27,289,820 - 27,298,627 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	27,416,658 - 27,425,567 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	27,416,665 - 27,425,843 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	27,361,664 - 27,370,488 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	27,373,445 - 27,382,254 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	27,880,768 - 27,889,603 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cfap298
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	27,879,715 - 27,889,435 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	9,578,162 - 9,588,289 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	9,578,354 - 9,588,108 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFAP298
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	196,210,011 - 196,224,923 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	196,210,006 - 196,225,395 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	206,220,246 - 206,235,893 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CFAP298
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	59,529,058 - 59,542,192 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	59,528,538 - 59,543,974 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	2,069,003 - 2,082,415 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cfap298
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	20,862,538 - 20,876,646 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624745	20,862,313 - 20,877,188 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cfap298
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	53,650,554 - 53,659,811 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cfap298
20 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	21
Count of miRNA genes:	21
Interacting mature miRNAs:	21
Transcripts:	ENSRNOT00000030279
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	22524746	82951192	Rat
1598841	Memor7	Memory QTL 7			exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	11	33306008	78306008	Rat
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	3818154	48818154	Rat
1598811	Bp291	Blood pressure QTL 291	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	33306008	78306008	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	10806125	55806125	Rat
634341	Bw121	Body weight QTL 121	3.56		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight (CMO:0000088)	11	35323199	55805892	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	32943067	89836615	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	29958996	57754989	Rat
2290451	Scl58	Serum cholesterol level QTL 58	3.48		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	11	26318031	55806125	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	31915469	76915469	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	36428416	81428416	Rat
1600394	Edcs1	Endometrial carcinoma susceptibility QTL1	2.9	0.04	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	11	12823152	57823152	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	34618760	79618760	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	36749459	81749459	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	36749459	81749459	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
631510	Spl2	Serum phospholipid level QTL 2	4.1		blood phospholipid amount (VT:0006084)	serum phospholipid level (CMO:0001171)	11	27556685	72556685	Rat

Markers in Region

RH127638

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	30,192,908 - 30,193,103 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	31,105,092 - 31,105,286	NCBI	Rnor6.0
Rnor_5.0	11	34,716,566 - 34,716,760	UniSTS	Rnor5.0
RGSC_v3.4	11	30,921,142 - 30,921,336	UniSTS	RGSC3.4
Celera	11	29,860,187 - 29,860,381	UniSTS
RH 3.4 Map	11	181.4	UniSTS
Cytogenetic Map	11	q11	UniSTS

RH131075

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	30,190,746 - 30,190,944 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	31,102,932 - 31,103,129	NCBI	Rnor6.0
Rnor_5.0	11	34,714,406 - 34,714,603	UniSTS	Rnor5.0
RGSC_v3.4	11	30,918,982 - 30,919,179	UniSTS	RGSC3.4
Celera	11	29,858,027 - 29,858,224	UniSTS
RH 3.4 Map	11	181.3	UniSTS
Cytogenetic Map	11	q11	UniSTS

RH140981

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	30,181,984 - 30,182,185 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	31,094,172 - 31,094,372	NCBI	Rnor6.0
Rnor_5.0	11	34,705,646 - 34,705,846	UniSTS	Rnor5.0
RGSC_v3.4	11	30,910,222 - 30,910,422	UniSTS	RGSC3.4
Celera	11	29,849,287 - 29,849,487	UniSTS
RH 3.4 Map	11	183.3	UniSTS
Cytogenetic Map	11	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000030279 ⟹ ENSRNOP00000030489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	43,668,014 - 43,677,382 (-)	Ensembl
mRatBN7.2 Ensembl	11	30,181,905 - 30,191,346 (-)	Ensembl
Rnor_6.0 Ensembl	11	31,094,084 - 31,103,520 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104948 ⟹ ENSRNOP00000093119

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	30,181,921 - 30,191,345 (-)	Ensembl

RefSeq Acc Id:

NM_001008288 ⟹ NP_001008289

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	43,667,996 - 43,677,382 (-)	NCBI
mRatBN7.2	11	30,181,916 - 30,191,302 (-)	NCBI
Rnor_6.0	11	31,094,103 - 31,103,487 (-)	NCBI
Rnor_5.0	11	34,705,577 - 34,714,961 (-)	NCBI
RGSC_v3.4	11	30,910,153 - 30,919,537 (-)	RGD
Celera	11	29,849,218 - 29,858,582 (-)	RGD

Sequence:

show sequence

CGAAGCAGCGGTTAGTCTCAGGGCGGTGCGGGTCAGGCCTACTCTGTTCGGGCCTCGTGTTCCC
TGCCTGCAGCCCTGCCGCCTCGGCGGCGCCTCTGGCGCAGCCATGGTGGTGCTACACGTGAAGA
GAGGCGATGAGAGCCAGTTCTTGCTGCAGGCGCCCGGGAGCACCGAGCTGGAAGAGCTCACGGC
TCAGGTGACCCGCGTCTACAACGGGCGGCTGAAGGTGCACCGGCTCTGCACAGAGATAGAGGAG
CTGGCAGAGCACGGTGTGTTTCTCCCCCCTAACATGCAAGGACTGACTGACGAGCAGATTGAAG
AGCTGAAACTAAAGGATGAGTGGGGGGAGAAGTGTGTGCCCAGCGGGGGGTCTGTTTTTACGAA
GGACGACATTGGACGGAGGAACGGGCACGCTCCAAATGAGAAAATGAAGCAGGTTTTAAAGAAG
ACGGTAGAAGAAGCCAAAGCGATGGTGTCTAAGAAACAAGTGGAAGCTGGAGTCTTTGTTACCA
TGGAGATGGTGAAAGATGCCTTGGACCAGCTTCGAGGTGCAGTAATGATTGTTTACCCCATGGG
GCTGCCGCCATACGATCCTATCCGAATGGAGTTTGAAAATAAAGAAGATCTGTCAGGAACTCAG
GCAGCGCTTGAAGTCATTCAGGAGTCGGAGGCACAGCTGTGGTGGGCTGCCAAGGAGCTGCGAA
GAACAAAGAAGCTTTCTGACTATGTGGGGAAAAATGAGAAAACCAAAATCATTGTCAAGATTCA
GCAGAGAGGGCAGGGTGCACCCGCCAGGGAGCCGCTCATCAGCAGTGAGGAGCACAAGCAGCTG
ATGCTGTTCTATCACAGAAGGCAGGAGGAGCTCAAGAAACTGGAAGAGAATGACGATGACTCCT
GTCTAAACTCCCCGTGGGCTGACAACACGGCTTTGAAAAGACATTTTCATGGGGTAAAAGACAT
AAAGTGGCGACCCAGGTGATGCCAGCACTTGATGCGGCTGTCAGAACCACAGCCCACCATCCTT
GGGCAAAATAATCATAATACTATAAAACACTATCAAAGATGTGGAGATTTCTATTTCCCTGGTT
TTCCTTTTGTTTGAATTTTTGAAATAAGTTGTTGGTAGTTTTAGAACTCAATAAATAAAAAAGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063270430 ⟹ XP_063126500

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	43,667,996 - 43,678,049 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001008289	(Get FASTA)	NCBI Sequence Viewer
	XP_063126500	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85340	(Get FASTA)	NCBI Sequence Viewer
	EDM10699	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000030489
GenBank Protein	Q5U3Z0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001008289 ⟸ NM_001008288

- UniProtKB:

Q5U3Z0 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MVVLHVKRGDESQFLLQAPGSTELEELTAQVTRVYNGRLKVHRLCTEIEELAEHGVFLPPNMQG
LTDEQIEELKLKDEWGEKCVPSGGSVFTKDDIGRRNGHAPNEKMKQVLKKTVEEAKAMVSKKQV
EAGVFVTMEMVKDALDQLRGAVMIVYPMGLPPYDPIRMEFENKEDLSGTQAALEVIQESEAQLW
WAAKELRRTKKLSDYVGKNEKTKIIVKIQQRGQGAPAREPLISSEEHKQLMLFYHRRQEELKKL
EENDDDSCLNSPWADNTALKRHFHGVKDIKWRPR

hide sequence

Ensembl Acc Id:

ENSRNOP00000030489 ⟸ ENSRNOT00000030279

Ensembl Acc Id:

ENSRNOP00000093119 ⟸ ENSRNOT00000104948

RefSeq Acc Id:	XP_063126500 ⟸ XM_063270430
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U3Z0-F1-model_v2	AlphaFold	Q5U3Z0	1-290	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698050

Promoter ID:

EPDNEW_R8575

Type:

initiation region

Name:

RGD1306954_1

Description:

similar to RIKEN cDNA 1110004E09

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	31,103,486 - 31,103,546	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306954	AgrOrtholog
BioCyc Gene	G2FUF-21928	BioCyc
Ensembl Genes	ENSRNOG00000021399	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000030279	ENTREZGENE
IMAGE_CLONE	IMAGE:7302628	IMAGE-MGC_LOAD
InterPro	CFAP298	UniProtKB/Swiss-Prot
KEGG Report	rno:288269	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105532	IMAGE-MGC_LOAD
NCBI Gene	288269	ENTREZGENE
PANTHER	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 298	UniProtKB/Swiss-Prot
	PTHR13238	UniProtKB/Swiss-Prot
Pfam	DUF2870	UniProtKB/Swiss-Prot
PhenoGen	Cfap298	PhenoGen
RatGTEx	ENSRNOG00000021399	RatGTEx
UniProt	A0A8L2QG38_RAT	UniProtKB/TrEMBL
	CF298_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-02-12	Cfap298	cilia and flagella associated protein 298	RGD1306954	similar to RIKEN cDNA 1110004E09	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306954	similar to RIKEN cDNA 1110004E09	RGD1306954_predicted	similar to RIKEN cDNA 1110004E09 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306954_predicted	similar to RIKEN cDNA 1110004E09 (predicted)	LOC288269_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC288269_predicted	similar to RIKEN cDNA 1110004E09 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - OMIM