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Gene: Carf (calcium responsive transcription factor) Rattus norvegicus

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Symbol:

Carf

Name:

calcium responsive transcription factor

RGD ID:

1306822

Description:

Enables DNA binding activity and DNA-binding transcription activator activity, RNA polymerase II-specific. Involved in cellular response to calcium ion. Located in nucleus. Orthologous to human CARF (calcium responsive transcription factor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Als2cr8; amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8; amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 protein; calcium response factor; calcium-response factor; calcium-responsive transcription factor; LOC301446

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	68,996,419 - 69,046,480 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	68,996,250 - 69,046,479 (+)	Ensembl				GRCr8
mRatBN7.2	9	61,502,368 - 61,552,433 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	61,506,956 - 61,550,462 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	70,003,754 - 70,051,035 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	75,119,315 - 75,166,596 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	73,438,022 - 73,485,304 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	66,878,526 - 66,928,658 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	66,888,393 - 66,926,377 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	66,692,215 - 66,742,322 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	58,642,178 - 58,689,313 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	58,934,642 - 58,981,655 (+)	NCBI		Celera
RGSC_v3.1	9	58,799,001 - 58,836,295 (+)	NCBI
Cytogenetic Map	9	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

coronary artery disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

amphetamine (EXP)

amphotericin B (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

crocidolite asbestos (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

hydrogen peroxide (ISO)

leflunomide (ISO)

Licochalcone B (ISO)

methimazole (EXP)

methotrexate (ISO)

methylmercury chloride (ISO)

okadaic acid (ISO)

pentanal (ISO)

phenylmercury acetate (ISO)

potassium dichromate (ISO)

resorcinol (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

thiram (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

Triptolide (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to calcium ion (IDA,ISO,ISS)

DNA-templated transcription (IEA)

obsolete regulation of DNA-binding transcription factor activity (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

granular component (ISO)

nucleus (IBA,IDA,IEA,ISO)

Molecular Function

DNA binding (IDA,IEA,ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (IDA,ISO)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	A calcium-responsive transcription factor, CaRF, that regulates neuronal activity-dependent expression of BDNF.	Tao X, etal., Neuron. 2002 Jan 31;33(3):383-95.

Additional References at PubMed

PMID:12154087	PMID:22174809

Genomics

Comparative Map Data

Carf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	68,996,419 - 69,046,480 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	68,996,250 - 69,046,479 (+)	Ensembl				GRCr8
mRatBN7.2	9	61,502,368 - 61,552,433 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	61,506,956 - 61,550,462 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	70,003,754 - 70,051,035 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	75,119,315 - 75,166,596 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	73,438,022 - 73,485,304 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	66,878,526 - 66,928,658 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	66,888,393 - 66,926,377 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	66,692,215 - 66,742,322 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	58,642,178 - 58,689,313 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	58,934,642 - 58,981,655 (+)	NCBI		Celera
RGSC_v3.1	9	58,799,001 - 58,836,295 (+)	NCBI
Cytogenetic Map	9	q32	NCBI

CARF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	202,912,275 - 202,988,263 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	202,912,214 - 202,988,263 (+)	Ensembl			hg38	GRCh38
GRCh37	2	203,776,998 - 203,852,986 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	203,485,223 - 203,559,305 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	203,602,963 - 203,674,418	NCBI
Celera	2	197,529,656 - 197,603,774 (+)	NCBI		Celera
Cytogenetic Map	2	q33.2	NCBI
HuRef	2	195,623,816 - 195,698,676 (+)	NCBI		HuRef
CHM1_1	2	203,783,594 - 203,857,698 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	203,393,728 - 203,469,790 (+)	NCBI		T2T-CHM13v2.0

Carf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	60,137,380 - 60,193,112 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	60,137,406 - 60,193,112 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	60,098,221 - 60,153,953 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	60,098,247 - 60,153,953 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	60,155,125 - 60,207,878 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	60,042,827 - 60,095,580 (+)	NCBI		MGSCv36	mm8
Celera	1	60,614,042 - 60,666,816 (+)	NCBI		Celera
Cytogenetic Map	1	C2	NCBI
cM Map	1	30.45	NCBI

Carf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	11,896,492 - 11,936,229 (-)	Ensembl
ChiLan1.0	NW_004955457	11,853,256 - 11,947,909 (-)	NCBI	ChiLan1.0	ChiLan1.0

CARF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	105,514,952 - 105,596,010 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	105,529,986 - 105,611,406 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	90,145,504 - 90,224,042 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	208,291,738 - 208,368,220 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	208,291,742 - 208,367,028 (+)	Ensembl			panPan2	panpan1.1

CARF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	11,786,976 - 11,884,644 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	11,787,078 - 11,848,893 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	12,670,481 - 12,767,767 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	11,723,938 - 11,821,651 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	11,724,583 - 11,802,891 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	11,680,125 - 11,778,004 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	11,651,505 - 11,749,155 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	11,645,422 - 11,743,112 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Carf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	159,988,251 - 160,040,680 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936726	1,922,060 - 2,010,981 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936726	1,958,561 - 2,010,972 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CARF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	106,410,491 - 106,466,799 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	106,410,245 - 106,482,502 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	117,859,334 - 117,949,120 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CARF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	88,650,436 - 88,735,369 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	88,651,152 - 88,735,384 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	110,652,266 - 110,735,944 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Carf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	13,431,825 - 13,466,969 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624765	13,370,578 - 13,504,485 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Carf
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	6,248,322 - 6,294,149 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Carf
378 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	34
Count of miRNA genes:	31
Interacting mature miRNAs:	34
Transcripts:	ENSRNOT00000023536
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	57460497	78547958	Rat
1578659	Tspe1	Trichinella spiralis expulsion QTL 1	4.8		parasite quantity (VT:0010441)	logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)	9	68875497	73185088	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat

Markers in Region

AU049192

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	61,507,883 - 61,508,018 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	66,883,884 - 66,884,018	NCBI	Rnor6.0
Rnor_5.0	9	66,697,548 - 66,697,682	UniSTS	Rnor5.0
RGSC_v3.4	9	58,647,511 - 58,647,645	UniSTS	RGSC3.4
Celera	9	58,939,976 - 58,940,110	UniSTS
Cytogenetic Map	9	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	91	59	6	355	191	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023536 ⟹ ENSRNOP00000023536

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	69,006,441 - 69,043,745 (+)	Ensembl
mRatBN7.2 Ensembl	9	61,512,393 - 61,549,698 (+)	Ensembl
Rnor_6.0 Ensembl	9	66,888,393 - 66,925,923 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087194 ⟹ ENSRNOP00000072606

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	68,996,617 - 69,046,479 (+)	Ensembl
mRatBN7.2 Ensembl	9	61,506,956 - 61,550,462 (+)	Ensembl
Rnor_6.0 Ensembl	9	66,889,028 - 66,926,377 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000124670 ⟹ ENSRNOP00000108961

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	69,007,733 - 69,046,479 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126635 ⟹ ENSRNOP00000100921

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	68,996,250 - 69,046,479 (+)	Ensembl

RefSeq Acc Id:

NM_001106915 ⟹ NP_001100385

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,996,599 - 69,043,745 (+)	NCBI
mRatBN7.2	9	61,502,550 - 61,549,698 (+)	NCBI
Rnor_6.0	9	66,878,551 - 66,925,923 (+)	NCBI
Rnor_5.0	9	66,692,215 - 66,742,322 (+)	NCBI
RGSC_v3.4	9	58,642,178 - 58,689,313 (+)	RGD
Celera	9	58,934,642 - 58,981,655 (+)	RGD

Sequence:

show sequence

CCGGAGAGTTGCGCCTGCGCATTGTGGTGGTCTCCACGGCGGGGCCTCGGAGCCAAGACGAGAA
CATGCTACAGTGAAGACAGAGTCACAGCTTCCATACAAATAAGCTGGCCTGCTTAGAATTCAGT
GCTCCAAGGGAAGACCACCAATGAATGCCAGAAAAGGCATTTCTGAGGCAAAATAACAGGAATC
TGGACTTGAACTTGAGCCACTGCCTGGAGGTATGGTGAGACCAACAGACGAAGAGACGATTGCC
ATTGGGAAGACAGCCCATTTTTCACAGTTCTCGAAAGGAGTGGGCATGCTGTACCACCAAGTGC
CAACAATAACACCAAGCCATTAGCCAATCAGAGAAAATGGGACTGACTGAGAAGCCAGCATGGA
GCCACGTCACTCAGTAGGAGGCACCTGTGGTGATGGTGAGACAGAAAGAGACACCCCAGGACTC
GAGAATATACCAGAGACACTGACTGACACACAGGCCCTTCATGAAGAGCAATTTCATCTTTTGG
ACCAAAATGGGCAGCCTATTCAATATGACCTTCAGTCTTTGGGAAATTCTACTGCACAAATGAC
AGGGATGGAGCAAGTGGTTATACCTCAGGAGTCGTTTGCAGACGTGTGTAGTCCTCCAGGTTAT
CTGTCTATTTCATTTTGGGATTTTATGAAGCTGGCTGATGCTTGCTTCCTCCCAAATGACCAGT
GTCTCTGAAGAGAAGCCCATTGGTGGGAGTTTGCCAGCTGTAAGCACAGATGCTCTAGAAGACA
GCGCCAGTAGCTACAGTCTTCACTCACAAGCATCCCTCGTGGGACCCAGAAAGTCAGGGACCAG
AACTCTTGAAGAACCTTTGCTGGCCCCTCTCCAGCCACTTTCTTGTAACACACCCATGTGGGCC
TGCCGTCTTAGGAGTTGTGAGAAAATTGGAGATTCCTACCGTGGCTACTGTGTAAGTGAGACTG
AATTAGAAAGCGTCCTAACTTTTCACAAGCAGCAAACACAGACTGTCTGGGGCACTCGCCAATC
TCCAAGCCCAGCCAAACCTGCCACACGCTTGATGTGGAAGTCTCAGTATGTCCCCTATGACGGC
ATCCCGTTTGTCAATGCAGGAAGTCGAGCTGTTGTAATGGAGTGTCAGTATGGACCAAGGAGAA
AAGGTTTTCAGTTAAAAAAAATCAGCGAGCAAGAAAGTAGGTCTTGTCATCTCTACAAAGCTAC
TTGTCCAGCCAGGATATACATTAAAAAGGTACAGAAATTTCCTGACTATAGAGTACCTACTGAC
CCCCAGATTGATAGGAAGACAATCCGGATGGAGCAGGAGAAAGCCTTCACTATGCTGAAGAAGA
ACCTGGTGGACGCGGGCGGTGTCCTTCGGTGGTATGTGCAGTTACCTACGCAGCAAGCTCACCA
GTATCATGAACCAGAGACTCCCGGTGTCCCTTTGTCACCGTCACCTTTCCCTATGTCTCCTCTT
GAGGAAGAGGAGGCTATAATCAGAGATGAGAACTGTGTGTTGCCCTCTCGTCTCCACCCGCAAG
TAGCGCATAAGATCCAGGAGTTAGTGTCCCAGGGAGTGGGGCAAGTGTATGCAGTGAGGAAGCA
GCTAAGAAAATTTGTGGAAAGAGAACTGTTCAAACCTGATGAGGTACCTGAAAGACATAATTTA
TCTTTTTTTCCAACTGTAAATGATATCAAAAATCATATCCACGAGGTACAGAAATCCTTGCAGA
CTGGAGATGTGGTATATAACTCAGAGATTATTCCAGCAACGCTTCAGTGGACTACAGATAGTGG
AAATATCCTCAGAGAGACTGTAACAGTTACATTTGCAGAAGGAAATTTACTAAAAGAGCCGATT
ACCAGCAAAATGGGGACAAGTCAGACACAAACTTCTTTGTCTCCAGAACCACTTCCCTTGCTCT
CCCCACTTTCTTCATTTCAGCCCAAAATATTTACACATTTACAGGCTTTGAAGTTGCAGCCAAG
ACTCTCCTCTCCTGATGGATCCCAGGCTTTGGTGTCAGTAAATAGCCATCCATCCTCCAGTCCC
CCCGGCCTTGATACGGCAGGAAATGCTGAAGCCAATAACCACTCTCTACTGCTTGGCCAGAGTC
AAAACCTTGGAACAGACACTTGCCTACCCGAGAACAGCAGCACGGCCTCTCCCATGGGCAGTCT
TCCGGAGTCAGTTCAGAACCTAGTTGCAGTGGATCAGCTGGTGGGAGGTGAGGATGCTGAGGAT
GCTGGGAATCTGGAAGGAAATGTAAAGAGGACTCTGTTGGGAGATGCACACACCATTCCAATAC
ACATCCTAGACAGCCATCCAGCTCTTGTTGAAGAAGATACTCTGTCCATGAACCAAGTTAAACA
AGAACCCAATGAGCCAACACTGTCTACAGAAGCAAAGACTTTGCTGGACTGTAAAAACGTGTCT
GCTACATAAATATTTCAAGTTTTTCAGAATTTACAGATCTGGCCCCTTCTGATGTCTTAGAAGG
TGAAGATTGTCAGGGCATGGTATATCACTGGACCAGAGTGGATGATGGGCAGTTTTGACTTAAA
ATTCAAATATTTGTTGCAAATTCTATATTTGTATTTCCCTTAAGAAATATTTTACTTTATTTTG
TATTCCTACAATTTTTTTATTATTCAGTAAGGCAAGTATTTTAAAAGATCATCTATCTGAAGTT
ATACATAGTAATTTAGTGTGAACGTAAATAGTTATATCCAGTTTTGGTTCTTACAAGACAGAAA
AGACCAACAATAAAGCAGTATGTGAGTGC

hide sequence

RefSeq Acc Id:

XM_006244971 ⟹ XP_006245033

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,996,423 - 69,046,480 (+)	NCBI
mRatBN7.2	9	61,502,368 - 61,552,433 (+)	NCBI
Rnor_6.0	9	66,878,541 - 66,928,658 (+)	NCBI
Rnor_5.0	9	66,692,215 - 66,742,322 (+)	NCBI

Sequence:

show sequence

GCTGCGCCTCCCGGAGAGTTGCGCCTGCGCATTGTGGTGGTCTCCACGGCGGGGCCTCGGAGCC
AAGACGAGGTATGGTGAGACCAACAGACGAAGAGACGATTGCCATTGGGAAGACAGCCCATTTT
TCACAGTTCTCGAAAGGAGTGGGCATGCTGTACCACCAAGTGCCAACAATAACACCAAGCGTCT
GACCTGTATGGACTCTGGGGATCCTTCCCTTGGACAAAATGATCCCCCTACCATTTTGCCCAAT
ACTGTTCCTGAAACACATGATCCACTCACATCACAGAATATACCAGAGACACTGACTGACACAC
AGGCCCTTCATGAAGAGCAATTTCATCTTTTGGACCAAAATGGGCAGCCTATTCAATATGACCT
TCAGTCTTTGGGAAATTCTACTGCACAAATGACAGGGATGGAGCAAGTGGTTATACCTCAGGAG
TCGTTTGCAGACGTGTGTAGTCCTCCAGGTGTCTCTGAAGAGAAGCCCATTGGTGGGAGTTTGC
CAGCTGTAAGCACAGATGCTCTAGAAGACAGCGCCAGTAGCTACAGTCTTCACTCACAAGCATC
CCTCGTGGGACCCAGAAAGTCAGGGACCAGAACTCTTGAAGAACCTTTGCTGGCCCCTCTCCAG
CCACTTTCTTGTAACACACCCATGTGGGCCTGCCGTCTTAGGAGTTGTGAGAAAATTGGAGATT
CCTACCGTGGCTACTGTGTAAGTGAGACTGAATTAGAAAGCGTCCTAACTTTTCACAAGCAGCA
AACACAGACTGTCTGGGGCACTCGCCAATCTCCAAGCCCAGCCAAACCTGCCACACGCTTGATG
TGGAAGTCTCAGTATGTCCCCTATGACGGCATCCCGTTTGTCAATGCAGGAAGTCGAGCTGTTG
TAATGGAGTGTCAGTATGGACCAAGGAGAAAAGGTTTTCAGTTAAAAAAAATCAGCGAGCAAGA
AAGTAGGTCTTGTCATCTCTACAAAGCTACTTGTCCAGCCAGGATATACATTAAAAAGGTACAG
AAATTTCCTGACTATAGAGTACCTACTGACCCCCAGATTGATAGGAAGACAATCCGGATGGAGC
AGGAGAAAGCCTTCACTATGCTGAAGAAGAACCTGGTGGACGCGGGCGGTGTCCTTCGGTGGTA
TGTGCAGTTACCTACGCAGCAAGCTCACCAGTATCATGAACCAGAGACTCCCGGTGTCCCTTTG
TCACCGTCACCTTTCCCTATGTCTCCTCTTGAGGAAGAGGAGGCTATAATCAGAGATGAGAACT
GTGTGTTGCCCTCTCGTCTCCACCCGCAAGTAGCGCATAAGATCCAGGAGTTAGTGTCCCAGGG
AGTGGGGCAAGTGTATGCAGTGAGGAAGCAGCTAAGAAAATTTGTGGAAAGAGAACTGTTCAAA
CCTGATGAGGTACCTGAAAGACATAATTTATCTTTTTTTCCAACTGTAAATGATATCAAAAATC
ATATCCACGAGGTACAGAAATCCTTGCAGACTGGAGATGTGGTATATAACTCAGAGATTATTCC
AGCAACGCTTCAGTGGACTACAGATAGTGGAAATATCCTCAGAGAGACTGTAACAGTTACATTT
GCAGAAGGAAATTTACTAAAAGAGCCGATTACCAGCAAAATGGGGACAAGTCAGACACAAACTT
CTTTGTCTCCAGAACCACTTCCCTTGCTCTCCCCACTTTCTTCATTTCAGCCCAAAATATTTAC
ACATTTACAGGCTTTGAAGTTGCAGCCAAGACTCTCCTCTCCTGATGGATCCCAGGCTTTGGTG
TCAGTAAATAGCCATCCATCCTCCAGTCCCCCCGGCCTTGATACGGCAGGAAATGCTGAAGCCA
ATAACCACTCTCTACTGCTTGGCCAGAGTCAAAACCTTGGAACAGACACTTGCCTACCCGAGAA
CAGCAGCACGGCCTCTCCCATGGGCAGTCTTCCGGAGTCAGTTCAGAACCTAGTTGCAGTGGAT
CAGCTGGTGGGAGGTGAGGATGCTGAGGATGCTGGGAATCTGGAAGGAAATGTAAAGAGGACTC
TGTTGGGAGATGCACACACCATTCCAATACACATCCTAGACAGCCATCCAGCTCTTGTTGAAGA
AGATACTCTGTCCATGAACCAAGTTAAACAAGAACCCAATGAGCCAACACTGTCTACAGAAGCA
AAGACTTTGCTGGACTGTAAAAACGTGTCTGCTACATAAATATTTCAAGTTTTTCAGAATTTAC
AGATCTGGCCCCTTCTGATGTCTTAGAAGGTGAAGATTGTCAGGGCATGGTATATCACTGGACC
AGAGTGGATGATGGGCAGTTTTGACTTAAAATTCAAATATTTGTTGCAAATTCTATATTTGTAT
TTCCCTTAAGAAATATTTTACTTTATTTTGTATTCCTACAATTTTTTTATTATTCAGTAAGGCA
AGTATTTTAAAAGATCATCTATCTGAAGTTATACATAGTAATTTAGTGTGAACGTAAATAGTTA
TATCCAGTTTTGGTTCTTACAAGACAGAAAAGACCAACAATAAAGCAGTATGTGAGTGCACATA
TAGGTGTGTCAGAAAATTTAAAGCTGTGAGAAGAGTTTTGATTAACAGACAGGTAAGAGAATAC
TTATCATCTGTTTATCTGGAAAGATAGAGCCATAGATTTCTATGGTAGCATAGAGCCACCAGTC
ACATCCCTCAATGCTGAATTTGCAGTTTATCCTCAGTTTTATATCTTTAACTGTAAAGGAATGG
TACTAAAGGTCATCTGTCAGAAATTTCAGTGACTTGGTAAGTTTTGAAAAGTTGAATTAATCAG
ATAAATAACACAAATCAATGTATTTGGCATATTTTTATATGGAATTGGAGGCAAATCCCTACCT
AGGAATAGAAATATAAAAAATTCAGAGTATTGGGGGGAAAGGTTAGAATTCCCTACTGTTTACA
GATCATTTGGGGGAACTTTTGATGATAGCAAAATTTTTGTTGTTTTTTAAATATTCAATTTCGA
CTAGAAAATAGTTTAAATAGTATTTACATTTTTTCTGTACTAGTGTTCTTACTGAATTGATAGT
ATTACAATTTATATATTTCAAGGTAAGTATATATAGCTTCAAATTTAGTTCATATTTGAAACAT
TAAAATATCTGATCTGATATTTGTTTGTTAAATAAGTACATTTATACTTAGTACCAAATAACTA
GTAACCAGTATGTTTATTATAAAGTTGTTTTCATGGAAGAGTGACTAGGTAGAAATTTCAAATG
TAACTCTCATGAAATTAACCTAGCTGAAGGGTAGTGGTGCACGTCTGTAATCCCAGCACTGAGG
AGGGAGAGAACTTGGTTTGTAAACTCAGATTTGCCTAGGCTACATAGTGAGACCTTACTAAGAA
AGAAAGGGGGATCACCTACAAGATTCTTTTTCTGGAGATTCATTTTTGAGTTATGTAAATTTTT
ATTTTTAAAAATAAGAACTTAAATGGATATTAAAGTTTAATATTCAAAGCATGAACAATGTAAT
TGATACCTGACCTTGATACTTTATGTGGATCGACTTTCCTAAAGTCTGATTTCCCATTATTATT
CACTTTGCTTTAGGTGTATTACCTGTACCTAAAGATAAAACACTGTTATTTTAAAAGTAGGCAG
AACTCTAAAATTCATTATCTTTACATCTATATCCTAGTCAACATAAAGTTTATTATAGCCCTAT
TGAAAGCAAAGTTCATATATAATTACACGTATGATTGTTAATAGGAACTGCTTTTCTTTTTTAA
AAGAAAGAACTGAAGATATCTGGTGCCAGTATTTATAGCAGCAGACGACTAAACCTGAATATAT
TATACTAAGTTTAATACAACTCTAGTCACTTCAAAATCTAGGTTCTCTTAGTCTGTGCATACTT
AACAGGAACAAGATCAAATTAGTATGTAGTTTAGGACTGAATTACAGGTTTCGTTATCTGTGTT
ATAGAAACTGTTTCAAGAACAGGTTTTCATCTTTCAATAATGATTATGGTTTATTACTAAATAT
TCACTCACAGAGGAATATTCTCTTGGAGACATTCTTTTTTTATTTGGATTGCTAAGGAGAAATG
CTGTTAAGGAACAAACTAGTCAATTTCTGTTGTGTGAGGGCAAGGAGAGAAGAGCAGAGGATCT
GATGGTTACTATGTAATCAGGAACACATACCGTGACATGTGTTTCTGTCACTCCACTCCACCAG
GCATAGCGGCAGACACCTTTAGTTTCAGTGGATCTCTGTGAGCTCCAGGGTAGCCTGGCCGACA
CAGTGAGATCAGGACAGCCAGAGCTACATAGTGAGACCCAGGAAGAAAGAAAAAAAACATGTTT
CTGTCACTTCATTCTGTTTGAATAGGTCTTCTGTTAATATTTTTTATCATGAGAATAGAAAGTT
ACATATATTCTTCCCACAAACAAAAAGAAAACAGAAAACTGAACACTTAAATCCCTAATTGTAT
ATTCTTGCATTTTTTTAGGTAGAAACTGGAACTATTAATATTTTTGTGTATTTAAATAAGTAGT
TCTTAAAGATGGTATCTAATAAGTTTAAAAATTCATTTGTCTTCTAAACTCATGTGTAGTCACA
GCGTGTCAGTATTGGCCAAAGGTGCTTAGCATCAGTATTCGAAAACTATGTTTACATATTTAAA
TGTTTAATTCTTTACAAATGTACCAGATCTTAAACACAAGTGTATAAAAATTTCAGTCTCTGTA
TTTGGCATTCACTTAACAACTCCACAGCAAACTTTGATAGTACCCTTTGGTTCATGTATGACAA
GATGGAGTAGGAGCTGAGGGGGAGCTGGACATTTAAAATAAGCAGTTAGGAATTCATAATCATA
GCCTGGATTGTTTCTTTGTAGTTTTCTTGTTCAAAACCTCCAAGTAAACTTTGTATATACACCA
GGAAATTATCGATGAACCACCACAGGAGACTTTCCCCCCAGTAGTAATTTTCTATGTAAGCAGC
CAATGTACTTAAAAAGCTTTAACATCTTATGCAAAGTAAATGTTTCCTAACCACCACAGAAGTG
ATAGGAAACATGAACTCTGGGTCCGGTATTGAAGTTTTTAATCTTAGCCCCAGCTTGTGCTTCA
TCTTGTTTCTATCCTGTCAAACTATATATGTAATCATGTGGGTATGAGACAGTGTTTACTTTAT
ACCGGGTTTGTAAAAAGATTTCAAAATGTGTATGTATATATTGTAACTTGATGTACAGTGTTCT
TATTATAATGTAATTTTTTATTAAAAATTCTGTTTTTTCTTA

hide sequence

RefSeq Acc Id:

XM_006244974 ⟹ XP_006245036

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,006,349 - 69,046,480 (+)	NCBI
mRatBN7.2	9	61,510,096 - 61,552,433 (+)	NCBI
Rnor_6.0	9	66,887,696 - 66,928,658 (+)	NCBI
Rnor_5.0	9	66,692,215 - 66,742,322 (+)	NCBI

Sequence:

show sequence

AAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAAGAAGTGCACATGAAGGATTTGGTCTTTTCTA
AGGTTTAGATGTCCACTGGCGTATTCAGAGTGTATTTCATAGGAGACATATTCTGTGCATGCGT
AGTCCTGTAGCACCAAAGCATCTTTCTAAAGTTATGTGATCCCATGTAGTTAACATACCTTGAG
GGACACAGATTATCATGTGTGTGTAATACCATCAACACCAAGGCAGACACATAAAGTTGCATAA
GGCCATATAGATTAACATGTCCTGAAGGACACGTGTTCTCATACATGCATAGTCCCACTGGTAC
CAAGGCATCTTTTAGAAAGTTATGTAATGTTGTATAGGTTACACCCAACCCATAAAATTAAACT
TTTATTTCATTAAATAATTGTGCAATGAGTGTAACATAACTTTATAACACAAATGCAATTTTGG
TGAGCAAACATAGGATATAGTTAAGGACAGAACGAGGGACTACGTAATCCTAGTATTTAATTTG
CCTTAAATGTGTTCTGGTGCCTTGACAAGTTAATTAACAAAAACAGTAATTTCTGTCTATAGAG
AGGAAATTATTTTACTTACATTGTGTAAGAGACCATAGTATGGAAGATGGAAATTTTACTTAGG
ATTAACATCCCCACAAAGCGTCATTAATTGTACAATTGGCCAGGTGTTTAATCTTTCAGCCATT
AGCCAATCAGAGAAAATGGGACTGACTGAGAAGCCAGCATGGAGCCACGTCACTCAGTAGGAGG
CACCTGTGGTGATGGTGAGACAGAAAGAGACACCCCAGGACTCGAGCGTCTGACCTGTATGGAC
TCTGGGGATCCTTCCCTTGGACAAAATGATCCCCCTACCATTTTGCCCAATACTGTTCCTGAAA
CACATGATCCACTCACATCACAGAATATACCAGAGACACTGACTGACACACAGGCCCTTCATGA
AGAGCAATTTCATCTTTTGGACCAAAATGGGCAGCCTATTCAATATGACCTTCAGTCTTTGGGA
AATTCTACTGCACAAATGACAGGGATGGAGCAAGTGGTTATACCTCAGGAGTCGTTTGCAGACG
TGTGTAGTCCTCCAGGTGTCTCTGAAGAGAAGCCCATTGGTGGGAGTTTGCCAGCTGTAAGCAC
AGATGCTCTAGAAGACAGCGCCAGTAGCTACAGTCTTCACTCACAAGCATCCCTCGTGGGACCC
AGAAAGTCAGGGACCAGAACTCTTGAAGAACCTTTGCTGGCCCCTCTCCAGCCACTTTCTTGTA
ACACACCCATGTGGGCCTGCCGTCTTAGGAGTTGTGAGAAAATTGGAGATTCCTACCGTGGCTA
CTGTGTAAGTGAGACTGAATTAGAAAGCGTCCTAACTTTTCACAAGCAGCAAACACAGACTGTC
TGGGGCACTCGCCAATCTCCAAGCCCAGCCAAACCTGCCACACGCTTGATGTGGAAGTCTCAGT
ATGTCCCCTATGACGGCATCCCGTTTGTCAATGCAGGAAGTCGAGCTGTTGTAATGGAGTGTCA
GTATGGACCAAGGAGAAAAGGTTTTCAGTTAAAAAAAATCAGCGAGCAAGAAAGTAGGTCTTGT
CATCTCTACAAAGCTACTTGTCCAGCCAGGATATACATTAAAAAGGTACAGAAATTTCCTGACT
ATAGAGTACCTACTGACCCCCAGATTGATAGGAAGACAATCCGGATGGAGCAGGAGAAAGCCTT
CACTATGCTGAAGAAGAACCTGGTGGACGCGGGCGGTGTCCTTCGGTGGTATGTGCAGTTACCT
ACGCAGCAAGCTCACCAGTATCATGAACCAGAGACTCCCGGTGTCCCTTTGTCACCGTCACCTT
TCCCTATGTCTCCTCTTGAGGAAGAGGAGGCTATAATCAGAGATGAGAACTGTGTGTTGCCCTC
TCGTCTCCACCCGCAAGTAGCGCATAAGATCCAGGAGTTAGTGTCCCAGGGAGTGGGGCAAGTG
TATGCAGTGAGGAAGCAGCTAAGAAAATTTGTGGAAAGAGAACTGTTCAAACCTGATGAGGTAC
CTGAAAGACATAATTTATCTTTTTTTCCAACTGTAAATGATATCAAAAATCATATCCACGAGGT
ACAGAAATCCTTGCAGACTGGAGATGTGGTATATAACTCAGAGATTATTCCAGCAACGCTTCAG
TGGACTACAGATAGTGGAAATATCCTCAGAGAGACTGTAACAGTTACATTTGCAGAAGGAAATT
TACTAAAAGAGCCGATTACCAGCAAAATGGGGACAAGTCAGACACAAACTTCTTTGTCTCCAGA
ACCACTTCCCTTGCTCTCCCCACTTTCTTCATTTCAGCCCAAAATATTTACACATTTACAGGCT
TTGAAGTTGCAGCCAAGACTCTCCTCTCCTGATGGATCCCAGGCTTTGGTGTCAGTAAATAGCC
ATCCATCCTCCAGTCCCCCCGGCCTTGATACGGCAGGAAATGCTGAAGCCAATAACCACTCTCT
ACTGCTTGGCCAGAGTCAAAACCTTGGAACAGACACTTGCCTACCCGAGAACAGCAGCACGGCC
TCTCCCATGGGCAGTCTTCCGGAGTCAGTTCAGAACCTAGTTGCAGTGGATCAGCTGGTGGGAG
GTGAGGATGCTGAGGATGCTGGGAATCTGGAAGGAAATGTAAAGAGGACTCTGTTGGGAGATGC
ACACACCATTCCAATACACATCCTAGACAGCCATCCAGCTCTTGTTGAAGAAGATACTCTGTCC
ATGAACCAAGTTAAACAAGAACCCAATGAGCCAACACTGTCTACAGAAGCAAAGACTTTGCTGG
ACTGTAAAAACGTGTCTGCTACATAAATATTTCAAGTTTTTCAGAATTTACAGATCTGGCCCCT
TCTGATGTCTTAGAAGGTGAAGATTGTCAGGGCATGGTATATCACTGGACCAGAGTGGATGATG
GGCAGTTTTGACTTAAAATTCAAATATTTGTTGCAAATTCTATATTTGTATTTCCCTTAAGAAA
TATTTTACTTTATTTTGTATTCCTACAATTTTTTTATTATTCAGTAAGGCAAGTATTTTAAAAG
ATCATCTATCTGAAGTTATACATAGTAATTTAGTGTGAACGTAAATAGTTATATCCAGTTTTGG
TTCTTACAAGACAGAAAAGACCAACAATAAAGCAGTATGTGAGTGCACATATAGGTGTGTCAGA
AAATTTAAAGCTGTGAGAAGAGTTTTGATTAACAGACAGGTAAGAGAATACTTATCATCTGTTT
ATCTGGAAAGATAGAGCCATAGATTTCTATGGTAGCATAGAGCCACCAGTCACATCCCTCAATG
CTGAATTTGCAGTTTATCCTCAGTTTTATATCTTTAACTGTAAAGGAATGGTACTAAAGGTCAT
CTGTCAGAAATTTCAGTGACTTGGTAAGTTTTGAAAAGTTGAATTAATCAGATAAATAACACAA
ATCAATGTATTTGGCATATTTTTATATGGAATTGGAGGCAAATCCCTACCTAGGAATAGAAATA
TAAAAAATTCAGAGTATTGGGGGGAAAGGTTAGAATTCCCTACTGTTTACAGATCATTTGGGGG
AACTTTTGATGATAGCAAAATTTTTGTTGTTTTTTAAATATTCAATTTCGACTAGAAAATAGTT
TAAATAGTATTTACATTTTTTCTGTACTAGTGTTCTTACTGAATTGATAGTATTACAATTTATA
TATTTCAAGGTAAGTATATATAGCTTCAAATTTAGTTCATATTTGAAACATTAAAATATCTGAT
CTGATATTTGTTTGTTAAATAAGTACATTTATACTTAGTACCAAATAACTAGTAACCAGTATGT
TTATTATAAAGTTGTTTTCATGGAAGAGTGACTAGGTAGAAATTTCAAATGTAACTCTCATGAA
ATTAACCTAGCTGAAGGGTAGTGGTGCACGTCTGTAATCCCAGCACTGAGGAGGGAGAGAACTT
GGTTTGTAAACTCAGATTTGCCTAGGCTACATAGTGAGACCTTACTAAGAAAGAAAGGGGGATC
ACCTACAAGATTCTTTTTCTGGAGATTCATTTTTGAGTTATGTAAATTTTTATTTTTAAAAATA
AGAACTTAAATGGATATTAAAGTTTAATATTCAAAGCATGAACAATGTAATTGATACCTGACCT
TGATACTTTATGTGGATCGACTTTCCTAAAGTCTGATTTCCCATTATTATTCACTTTGCTTTAG
GTGTATTACCTGTACCTAAAGATAAAACACTGTTATTTTAAAAGTAGGCAGAACTCTAAAATTC
ATTATCTTTACATCTATATCCTAGTCAACATAAAGTTTATTATAGCCCTATTGAAAGCAAAGTT
CATATATAATTACACGTATGATTGTTAATAGGAACTGCTTTTCTTTTTTAAAAGAAAGAACTGA
AGATATCTGGTGCCAGTATTTATAGCAGCAGACGACTAAACCTGAATATATTATACTAAGTTTA
ATACAACTCTAGTCACTTCAAAATCTAGGTTCTCTTAGTCTGTGCATACTTAACAGGAACAAGA
TCAAATTAGTATGTAGTTTAGGACTGAATTACAGGTTTCGTTATCTGTGTTATAGAAACTGTTT
CAAGAACAGGTTTTCATCTTTCAATAATGATTATGGTTTATTACTAAATATTCACTCACAGAGG
AATATTCTCTTGGAGACATTCTTTTTTTATTTGGATTGCTAAGGAGAAATGCTGTTAAGGAACA
AACTAGTCAATTTCTGTTGTGTGAGGGCAAGGAGAGAAGAGCAGAGGATCTGATGGTTACTATG
TAATCAGGAACACATACCGTGACATGTGTTTCTGTCACTCCACTCCACCAGGCATAGCGGCAGA
CACCTTTAGTTTCAGTGGATCTCTGTGAGCTCCAGGGTAGCCTGGCCGACACAGTGAGATCAGG
ACAGCCAGAGCTACATAGTGAGACCCAGGAAGAAAGAAAAAAAACATGTTTCTGTCACTTCATT
CTGTTTGAATAGGTCTTCTGTTAATATTTTTTATCATGAGAATAGAAAGTTACATATATTCTTC
CCACAAACAAAAAGAAAACAGAAAACTGAACACTTAAATCCCTAATTGTATATTCTTGCATTTT
TTTAGGTAGAAACTGGAACTATTAATATTTTTGTGTATTTAAATAAGTAGTTCTTAAAGATGGT
ATCTAATAAGTTTAAAAATTCATTTGTCTTCTAAACTCATGTGTAGTCACAGCGTGTCAGTATT
GGCCAAAGGTGCTTAGCATCAGTATTCGAAAACTATGTTTACATATTTAAATGTTTAATTCTTT
ACAAATGTACCAGATCTTAAACACAAGTGTATAAAAATTTCAGTCTCTGTATTTGGCATTCACT
TAACAACTCCACAGCAAACTTTGATAGTACCCTTTGGTTCATGTATGACAAGATGGAGTAGGAG
CTGAGGGGGAGCTGGACATTTAAAATAAGCAGTTAGGAATTCATAATCATAGCCTGGATTGTTT
CTTTGTAGTTTTCTTGTTCAAAACCTCCAAGTAAACTTTGTATATACACCAGGAAATTATCGAT
GAACCACCACAGGAGACTTTCCCCCCAGTAGTAATTTTCTATGTAAGCAGCCAATGTACTTAAA
AAGCTTTAACATCTTATGCAAAGTAAATGTTTCCTAACCACCACAGAAGTGATAGGAAACATGA
ACTCTGGGTCCGGTATTGAAGTTTTTAATCTTAGCCCCAGCTTGTGCTTCATCTTGTTTCTATC
CTGTCAAACTATATATGTAATCATGTGGGTATGAGACAGTGTTTACTTTATACCGGGTTTGTAA
AAAGATTTCAAAATGTGTATGTATATATTGTAACTTGATGTACAGTGTTCTTATTATAATGTAA
TTTTTTATTAAAAATTCTGTTTTTTCTTA

hide sequence

RefSeq Acc Id:

XM_017596367 ⟹ XP_017451856

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,027,439 - 69,046,480 (+)	NCBI
mRatBN7.2	9	61,533,390 - 61,552,433 (+)	NCBI
Rnor_6.0	9	66,909,645 - 66,928,658 (+)	NCBI

Sequence:

show sequence

CCATCAGTCACTTGAAGACTCCCCGCAGTTGTGCTCCATTGTGACAATGGGACTTTTGTGAGAG
GATATATTTCATTGTTGTAGGAAGTCGAGCTGTTGTAATGGAGTGTCAGTATGGACCAAGGAGA
AAAGGTTTTCAGTTAAAAAAAATCAGCGAGCAAGAAAGTAGGTCTTGTCATCTCTACAAAGCTA
CTTGTCCAGCCAGGATATACATTAAAAAGGTACAGAAATTTCCTGACTATAGAGTACCTACTGA
CCCCCAGATTGATAGGAAGACAATCCGGATGGAGCAGGAGAAAGCCTTCACTATGCTGAAGAAG
AACCTGGTGGACGCGGGCGGTGTCCTTCGGTGGTATGTGCAGTTACCTACGCAGCAAGCTCACC
AGTATCATGAACCAGAGACTCCCGGTGTCCCTTTGTCACCGTCACCTTTCCCTATGTCTCCTCT
TGAGGAAGAGGAGGCTATAATCAGAGATGAGAACTGTGTGTTGCCCTCTCGTCTCCACCCGCAA
GTAGCGCATAAGATCCAGGAGTTAGTGTCCCAGGGAGTGGGGCAAGTGTATGCAGTGAGGAAGC
AGCTAAGAAAATTTGTGGAAAGAGAACTGTTCAAACCTGATGAGGTACCTGAAAGACATAATTT
ATCTTTTTTTCCAACTGTAAATGATATCAAAAATCATATCCACGAGGTACAGAAATCCTTGCAG
ACTGGAGATGTGGTATATAACTCAGAGATTATTCCAGCAACGCTTCAGTGGACTACAGATAGTG
GAAATATCCTCAGAGAGACTGTAACAGTTACATTTGCAGAAGGAAATTTACTAAAAGAGCCGAT
TACCAGCAAAATGGGGACAAGTCAGACACAAACTTCTTTGTCTCCAGAACCACTTCCCTTGCTC
TCCCCACTTTCTTCATTTCAGCCCAAAATATTTACACATTTACAGGCTTTGAAGTTGCAGCCAA
GACTCTCCTCTCCTGATGGATCCCAGGCTTTGGTGTCAGTAAATAGCCATCCATCCTCCAGTCC
CCCCGGCCTTGATACGGCAGGAAATGCTGAAGCCAATAACCACTCTCTACTGCTTGGCCAGAGT
CAAAACCTTGGAACAGACACTTGCCTACCCGAGAACAGCAGCACGGCCTCTCCCATGGGCAGTC
TTCCGGAGTCAGTTCAGAACCTAGTTGCAGTGGATCAGCTGGTGGGAGGTGAGGATGCTGAGGA
TGCTGGGAATCTGGAAGGAAATGTAAAGAGGACTCTGTTGGGAGATGCACACACCATTCCAATA
CACATCCTAGACAGCCATCCAGCTCTTGTTGAAGAAGATACTCTGTCCATGAACCAAGTTAAAC
AAGAACCCAATGAGCCAACACTGTCTACAGAAGCAAAGACTTTGCTGGACTGTAAAAACGTGTC
TGCTACATAAATATTTCAAGTTTTTCAGAATTTACAGATCTGGCCCCTTCTGATGTCTTAGAAG
GTGAAGATTGTCAGGGCATGGTATATCACTGGACCAGAGTGGATGATGGGCAGTTTTGACTTAA
AATTCAAATATTTGTTGCAAATTCTATATTTGTATTTCCCTTAAGAAATATTTTACTTTATTTT
GTATTCCTACAATTTTTTTATTATTCAGTAAGGCAAGTATTTTAAAAGATCATCTATCTGAAGT
TATACATAGTAATTTAGTGTGAACGTAAATAGTTATATCCAGTTTTGGTTCTTACAAGACAGAA
AAGACCAACAATAAAGCAGTATGTGAGTGCACATATAGGTGTGTCAGAAAATTTAAAGCTGTGA
GAAGAGTTTTGATTAACAGACAGGTAAGAGAATACTTATCATCTGTTTATCTGGAAAGATAGAG
CCATAGATTTCTATGGTAGCATAGAGCCACCAGTCACATCCCTCAATGCTGAATTTGCAGTTTA
TCCTCAGTTTTATATCTTTAACTGTAAAGGAATGGTACTAAAGGTCATCTGTCAGAAATTTCAG
TGACTTGGTAAGTTTTGAAAAGTTGAATTAATCAGATAAATAACACAAATCAATGTATTTGGCA
TATTTTTATATGGAATTGGAGGCAAATCCCTACCTAGGAATAGAAATATAAAAAATTCAGAGTA
TTGGGGGGAAAGGTTAGAATTCCCTACTGTTTACAGATCATTTGGGGGAACTTTTGATGATAGC
AAAATTTTTGTTGTTTTTTAAATATTCAATTTCGACTAGAAAATAGTTTAAATAGTATTTACAT
TTTTTCTGTACTAGTGTTCTTACTGAATTGATAGTATTACAATTTATATATTTCAAGGTAAGTA
TATATAGCTTCAAATTTAGTTCATATTTGAAACATTAAAATATCTGATCTGATATTTGTTTGTT
AAATAAGTACATTTATACTTAGTACCAAATAACTAGTAACCAGTATGTTTATTATAAAGTTGTT
TTCATGGAAGAGTGACTAGGTAGAAATTTCAAATGTAACTCTCATGAAATTAACCTAGCTGAAG
GGTAGTGGTGCACGTCTGTAATCCCAGCACTGAGGAGGGAGAGAACTTGGTTTGTAAACTCAGA
TTTGCCTAGGCTACATAGTGAGACCTTACTAAGAAAGAAAGGGGGATCACCTACAAGATTCTTT
TTCTGGAGATTCATTTTTGAGTTATGTAAATTTTTATTTTTAAAAATAAGAACTTAAATGGATA
TTAAAGTTTAATATTCAAAGCATGAACAATGTAATTGATACCTGACCTTGATACTTTATGTGGA
TCGACTTTCCTAAAGTCTGATTTCCCATTATTATTCACTTTGCTTTAGGTGTATTACCTGTACC
TAAAGATAAAACACTGTTATTTTAAAAGTAGGCAGAACTCTAAAATTCATTATCTTTACATCTA
TATCCTAGTCAACATAAAGTTTATTATAGCCCTATTGAAAGCAAAGTTCATATATAATTACACG
TATGATTGTTAATAGGAACTGCTTTTCTTTTTTAAAAGAAAGAACTGAAGATATCTGGTGCCAG
TATTTATAGCAGCAGACGACTAAACCTGAATATATTATACTAAGTTTAATACAACTCTAGTCAC
TTCAAAATCTAGGTTCTCTTAGTCTGTGCATACTTAACAGGAACAAGATCAAATTAGTATGTAG
TTTAGGACTGAATTACAGGTTTCGTTATCTGTGTTATAGAAACTGTTTCAAGAACAGGTTTTCA
TCTTTCAATAATGATTATGGTTTATTACTAAATATTCACTCACAGAGGAATATTCTCTTGGAGA
CATTCTTTTTTTATTTGGATTGCTAAGGAGAAATGCTGTTAAGGAACAAACTAGTCAATTTCTG
TTGTGTGAGGGCAAGGAGAGAAGAGCAGAGGATCTGATGGTTACTATGTAATCAGGAACACATA
CCGTGACATGTGTTTCTGTCACTCCACTCCACCAGGCATAGCGGCAGACACCTTTAGTTTCAGT
GGATCTCTGTGAGCTCCAGGGTAGCCTGGCCGACACAGTGAGATCAGGACAGCCAGAGCTACAT
AGTGAGACCCAGGAAGAAAGAAAAAAAACATGTTTCTGTCACTTCATTCTGTTTGAATAGGTCT
TCTGTTAATATTTTTTATCATGAGAATAGAAAGTTACATATATTCTTCCCACAAACAAAAAGAA
AACAGAAAACTGAACACTTAAATCCCTAATTGTATATTCTTGCATTTTTTTAGGTAGAAACTGG
AACTATTAATATTTTTGTGTATTTAAATAAGTAGTTCTTAAAGATGGTATCTAATAAGTTTAAA
AATTCATTTGTCTTCTAAACTCATGTGTAGTCACAGCGTGTCAGTATTGGCCAAAGGTGCTTAG
CATCAGTATTCGAAAACTATGTTTACATATTTAAATGTTTAATTCTTTACAAATGTACCAGATC
TTAAACACAAGTGTATAAAAATTTCAGTCTCTGTATTTGGCATTCACTTAACAACTCCACAGCA
AACTTTGATAGTACCCTTTGGTTCATGTATGACAAGATGGAGTAGGAGCTGAGGGGGAGCTGGA
CATTTAAAATAAGCAGTTAGGAATTCATAATCATAGCCTGGATTGTTTCTTTGTAGTTTTCTTG
TTCAAAACCTCCAAGTAAACTTTGTATATACACCAGGAAATTATCGATGAACCACCACAGGAGA
CTTTCCCCCCAGTAGTAATTTTCTATGTAAGCAGCCAATGTACTTAAAAAGCTTTAACATCTTA
TGCAAAGTAAATGTTTCCTAACCACCACAGAAGTGATAGGAAACATGAACTCTGGGTCCGGTAT
TGAAGTTTTTAATCTTAGCCCCAGCTTGTGCTTCATCTTGTTTCTATCCTGTCAAACTATATAT
GTAATCATGTGGGTATGAGACAGTGTTTACTTTATACCGGGTTTGTAAAAAGATTTCAAAATGT
GTATGTATATATTGTAACTTGATGTACAGTGTTCTTATTATAATGTAATTTTTTATTAAAAATT
CTGTTTTTTCTTA

hide sequence

RefSeq Acc Id:

XM_039083318 ⟹ XP_038939246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,996,419 - 69,046,480 (+)	NCBI
mRatBN7.2	9	61,502,368 - 61,552,433 (+)	NCBI

RefSeq Acc Id:

XM_039083319 ⟹ XP_038939247

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	68,997,262 - 69,046,480 (+)	NCBI
mRatBN7.2	9	61,503,251 - 61,552,433 (+)	NCBI

RefSeq Acc Id:

XM_039083320 ⟹ XP_038939248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,023,530 - 69,046,480 (+)	NCBI
mRatBN7.2	9	61,529,472 - 61,552,433 (+)	NCBI

RefSeq Acc Id:

XM_039083321 ⟹ XP_038939249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	69,021,521 - 69,046,480 (+)	NCBI
mRatBN7.2	9	61,527,450 - 61,552,433 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100385	(Get FASTA)	NCBI Sequence Viewer
	NP_001424588	(Get FASTA)	NCBI Sequence Viewer
	NP_001424589	(Get FASTA)	NCBI Sequence Viewer
	XP_006245033	(Get FASTA)	NCBI Sequence Viewer
	XP_006245036	(Get FASTA)	NCBI Sequence Viewer
	XP_017451856	(Get FASTA)	NCBI Sequence Viewer
	XP_038939246	(Get FASTA)	NCBI Sequence Viewer
	XP_038939247	(Get FASTA)	NCBI Sequence Viewer
	XP_038939248	(Get FASTA)	NCBI Sequence Viewer
	XP_038939249	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D4A7U2	(Get FASTA)	NCBI Sequence Viewer
	EDL98937	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023536
	ENSRNOP00000023536.4
	ENSRNOP00000072606
	ENSRNOP00000100921

RefSeq Acc Id:

NP_001100385 ⟸ NM_001106915

- UniProtKB:

D4A7U2 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MLASSQMTSVSEEKPIGGSLPAVSTDALEDSASSYSLHSQASLVGPRKSGTRTLEEPLLAPLQP
LSCNTPMWACRLRSCEKIGDSYRGYCVSETELESVLTFHKQQTQTVWGTRQSPSPAKPATRLMW
KSQYVPYDGIPFVNAGSRAVVMECQYGPRRKGFQLKKISEQESRSCHLYKATCPARIYIKKVQK
FPDYRVPTDPQIDRKTIRMEQEKAFTMLKKNLVDAGGVLRWYVQLPTQQAHQYHEPETPGVPLS
PSPFPMSPLEEEEAIIRDENCVLPSRLHPQVAHKIQELVSQGVGQVYAVRKQLRKFVERELFKP
DEVPERHNLSFFPTVNDIKNHIHEVQKSLQTGDVVYNSEIIPATLQWTTDSGNILRETVTVTFA
EGNLLKEPITSKMGTSQTQTSLSPEPLPLLSPLSSFQPKIFTHLQALKLQPRLSSPDGSQALVS
VNSHPSSSPPGLDTAGNAEANNHSLLLGQSQNLGTDTCLPENSSTASPMGSLPESVQNLVAVDQ
LVGGEDAEDAGNLEGNVKRTLLGDAHTIPIHILDSHPALVEEDTLSMNQVKQEPNEPTLSTEAK
TLLDCKNVSAT

hide sequence

RefSeq Acc Id:

XP_006245033 ⟸ XM_006244971

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDSGDPSLGQNDPPTILPNTVPETHDPLTSQNIPETLTDTQALHEEQFHLLDQNGQPIQYDLQS
LGNSTAQMTGMEQVVIPQESFADVCSPPGVSEEKPIGGSLPAVSTDALEDSASSYSLHSQASLV
GPRKSGTRTLEEPLLAPLQPLSCNTPMWACRLRSCEKIGDSYRGYCVSETELESVLTFHKQQTQ
TVWGTRQSPSPAKPATRLMWKSQYVPYDGIPFVNAGSRAVVMECQYGPRRKGFQLKKISEQESR
SCHLYKATCPARIYIKKVQKFPDYRVPTDPQIDRKTIRMEQEKAFTMLKKNLVDAGGVLRWYVQ
LPTQQAHQYHEPETPGVPLSPSPFPMSPLEEEEAIIRDENCVLPSRLHPQVAHKIQELVSQGVG
QVYAVRKQLRKFVERELFKPDEVPERHNLSFFPTVNDIKNHIHEVQKSLQTGDVVYNSEIIPAT
LQWTTDSGNILRETVTVTFAEGNLLKEPITSKMGTSQTQTSLSPEPLPLLSPLSSFQPKIFTHL
QALKLQPRLSSPDGSQALVSVNSHPSSSPPGLDTAGNAEANNHSLLLGQSQNLGTDTCLPENSS
TASPMGSLPESVQNLVAVDQLVGGEDAEDAGNLEGNVKRTLLGDAHTIPIHILDSHPALVEEDT
LSMNQVKQEPNEPTLSTEAKTLLDCKNVSAT

hide sequence

RefSeq Acc Id:

XP_006245036 ⟸ XM_006244974

- Peptide Label:

isoform X5

- Sequence:

show sequence

MEPRHSVGGTCGDGETERDTPGLERLTCMDSGDPSLGQNDPPTILPNTVPETHDPLTSQNIPET
LTDTQALHEEQFHLLDQNGQPIQYDLQSLGNSTAQMTGMEQVVIPQESFADVCSPPGVSEEKPI
GGSLPAVSTDALEDSASSYSLHSQASLVGPRKSGTRTLEEPLLAPLQPLSCNTPMWACRLRSCE
KIGDSYRGYCVSETELESVLTFHKQQTQTVWGTRQSPSPAKPATRLMWKSQYVPYDGIPFVNAG
SRAVVMECQYGPRRKGFQLKKISEQESRSCHLYKATCPARIYIKKVQKFPDYRVPTDPQIDRKT
IRMEQEKAFTMLKKNLVDAGGVLRWYVQLPTQQAHQYHEPETPGVPLSPSPFPMSPLEEEEAII
RDENCVLPSRLHPQVAHKIQELVSQGVGQVYAVRKQLRKFVERELFKPDEVPERHNLSFFPTVN
DIKNHIHEVQKSLQTGDVVYNSEIIPATLQWTTDSGNILRETVTVTFAEGNLLKEPITSKMGTS
QTQTSLSPEPLPLLSPLSSFQPKIFTHLQALKLQPRLSSPDGSQALVSVNSHPSSSPPGLDTAG
NAEANNHSLLLGQSQNLGTDTCLPENSSTASPMGSLPESVQNLVAVDQLVGGEDAEDAGNLEGN
VKRTLLGDAHTIPIHILDSHPALVEEDTLSMNQVKQEPNEPTLSTEAKTLLDCKNVSAT

hide sequence

RefSeq Acc Id:

XP_017451856 ⟸ XM_017596367

- Peptide Label:

isoform X4

- Sequence:

show sequence

MECQYGPRRKGFQLKKISEQESRSCHLYKATCPARIYIKKVQKFPDYRVPTDPQIDRKTIRMEQ
EKAFTMLKKNLVDAGGVLRWYVQLPTQQAHQYHEPETPGVPLSPSPFPMSPLEEEEAIIRDENC
VLPSRLHPQVAHKIQELVSQGVGQVYAVRKQLRKFVERELFKPDEVPERHNLSFFPTVNDIKNH
IHEVQKSLQTGDVVYNSEIIPATLQWTTDSGNILRETVTVTFAEGNLLKEPITSKMGTSQTQTS
LSPEPLPLLSPLSSFQPKIFTHLQALKLQPRLSSPDGSQALVSVNSHPSSSPPGLDTAGNAEAN
NHSLLLGQSQNLGTDTCLPENSSTASPMGSLPESVQNLVAVDQLVGGEDAEDAGNLEGNVKRTL
LGDAHTIPIHILDSHPALVEEDTLSMNQVKQEPNEPTLSTEAKTLLDCKNVSAT

hide sequence

Ensembl Acc Id:

ENSRNOP00000023536 ⟸ ENSRNOT00000023536

Ensembl Acc Id:

ENSRNOP00000072606 ⟸ ENSRNOT00000087194

RefSeq Acc Id:	XP_038939246 ⟸ XM_039083318
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038939247 ⟸ XM_039083319
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K3E6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939249 ⟸ XM_039083321
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038939248 ⟸ XM_039083320
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000100921 ⟸ ENSRNOT00000126635

Ensembl Acc Id:

ENSRNOP00000108961 ⟸ ENSRNOT00000124670

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A7U2-F1-model_v2	AlphaFold	D4A7U2	1-587	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306822	AgrOrtholog
BioCyc Gene	G2FUF-27384	BioCyc
Ensembl Genes	ENSRNOG00000017491	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000023536	ENTREZGENE
	ENSRNOT00000023536.7	UniProtKB/Swiss-Prot
	ENSRNOT00000087194	ENTREZGENE
	ENSRNOT00000126635	ENTREZGENE
InterPro	CaRF	UniProtKB/Swiss-Prot
KEGG Report	rno:301446	UniProtKB/Swiss-Prot
NCBI Gene	301446	ENTREZGENE
PANTHER	CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR	UniProtKB/Swiss-Prot
	PTHR14694	UniProtKB/Swiss-Prot
Pfam	ALS2CR8	UniProtKB/Swiss-Prot
PhenoGen	Carf	PhenoGen
RatGTEx	ENSRNOG00000017491	RatGTEx
UniProt	A0A0G2K3E6	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LIB4_RAT	UniProtKB/TrEMBL
	A0ABK0M240_RAT	UniProtKB/TrEMBL
	CARTF_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-07-09	Carf	calcium responsive transcription factor	Als2cr8	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-01-06	Als2cr8	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8	Carf	calcium response factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Carf	calcium response factor	Carf_predicted	calcium response factor (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Carf_predicted	calcium response factor (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD