Rab5b (RAB5B, member RAS oncogene family) - Rat Genome Database

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Gene: Rab5b (RAB5B, member RAS oncogene family) Rattus norvegicus
Analyze
Symbol: Rab5b
Name: RAB5B, member RAS oncogene family
RGD ID: 1306489
Description: Predicted to enable G protein activity; GDP binding activity; and GTP-dependent protein binding activity. Predicted to be involved in several processes, including endosomal transport; intracellular protein transport; and plasma membrane to endosome transport. Predicted to act upstream of or within endosome organization and regulation of endocytosis. Is active in synaptic vesicle membrane. Orthologous to human RAB5B (RAB5B, member RAS oncogene family); PARTICIPATES IN endocytosis pathway; Entamoebiasis pathway; phagocytosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC288779; ras-related protein Rab-5B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,693,971 - 1,712,936 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl71,693,989 - 1,712,780 (-)EnsemblGRCr8
mRatBN7.271,109,449 - 1,128,348 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl71,109,454 - 1,128,268 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx73,872,624 - 3,891,374 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,748,296 - 5,767,046 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.076,045,368 - 6,063,861 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.073,104,530 - 3,123,384 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl73,104,551 - 3,123,297 (-)Ensemblrn6Rnor6.0
Rnor_5.073,077,228 - 3,096,075 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.471,979,776 - 1,998,540 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7979,663 - 998,427 (-)NCBICelera
RGSC_v3.171,980,577 - 1,998,878 (-)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Quantitative analysis of synaptic vesicle Rabs uncovers distinct yet overlapping roles for Rab3a and Rab27b in Ca2+-triggered exocytosis. Pavlos NJ, etal., J Neurosci. 2010 Oct 6;30(40):13441-53. doi: 10.1523/JNEUROSCI.0907-10.2010.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7789520   PMID:10491193   PMID:11432782   PMID:12477932   PMID:15326289   PMID:17562788   PMID:18445495   PMID:18504258   PMID:19056867   PMID:19717423   PMID:20458337   PMID:20937701  
PMID:23533145   PMID:25002582  


Genomics

Comparative Map Data
Rab5b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,693,971 - 1,712,936 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl71,693,989 - 1,712,780 (-)EnsemblGRCr8
mRatBN7.271,109,449 - 1,128,348 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl71,109,454 - 1,128,268 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx73,872,624 - 3,891,374 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,748,296 - 5,767,046 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.076,045,368 - 6,063,861 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.073,104,530 - 3,123,384 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl73,104,551 - 3,123,297 (-)Ensemblrn6Rnor6.0
Rnor_5.073,077,228 - 3,096,075 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.471,979,776 - 1,998,540 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7979,663 - 998,427 (-)NCBICelera
RGSC_v3.171,980,577 - 1,998,878 (-)NCBI
Cytogenetic Map7q11NCBI
RAB5B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381255,973,949 - 55,996,683 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1255,973,913 - 55,996,683 (+)Ensemblhg38GRCh38
GRCh371256,367,733 - 56,390,467 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,654,129 - 54,674,757 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341254,654,128 - 54,674,753NCBI
Celera1256,020,546 - 56,041,174 (+)NCBICelera
Cytogenetic Map12q13.2NCBI
HuRef1253,406,584 - 53,429,353 (+)NCBIHuRef
CHM1_11256,334,808 - 56,357,578 (+)NCBICHM1_1
T2T-CHM13v2.01255,941,012 - 55,963,746 (+)NCBIT2T-CHM13v2.0
Rab5b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,511,980 - 128,532,160 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,513,044 - 128,532,133 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3810128,677,170 - 128,696,284 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,677,175 - 128,696,264 (-)Ensemblmm10GRCm38
MGSCv3710128,114,235 - 128,133,324 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610128,080,826 - 128,099,213 (-)NCBIMGSCv36mm8
Celera10131,069,284 - 131,088,400 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.13NCBI
Rab5b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,576,247 - 3,580,192 (+)Ensembl
ChiLan1.0NW_0049554583,563,363 - 3,582,620 (+)NCBIChiLan1.0ChiLan1.0
RAB5B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,334,994 - 38,355,711 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,329,770 - 38,352,483 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,916,314 - 32,939,047 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11233,168,248 - 33,188,865 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,168,254 - 33,188,676 (-)EnsemblpanPan2panpan1.1
RAB5B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110307,693 - 325,766 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10320,366 - 323,844 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha10369,626 - 387,933 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.010314,513 - 332,609 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10314,547 - 332,362 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110292,317 - 310,622 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010535,089 - 553,175 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010659,367 - 677,675 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rab5b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,461,972 - 58,483,266 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646386,833 - 410,192 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936646386,958 - 408,265 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB5B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,387,250 - 21,389,745 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1521,373,333 - 21,392,729 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RAB5B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11151,912,417 - 51,933,862 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1151,926,016 - 51,931,356 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037194,051,372 - 194,074,986 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab5b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480212,059,503 - 12,066,296 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480212,058,916 - 12,065,177 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rab5b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11156,155,015 - 156,172,885 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rab5b
229 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:355
Count of miRNA genes:201
Interacting mature miRNAs:256
Transcripts:ENSRNOT00000061878
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat

Markers in Region
RH129759  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr871,695,296 - 1,695,458 (+)Marker Load Pipeline
mRatBN7.271,110,779 - 1,110,942 (+)MAPPERmRatBN7.2
Rnor_6.073,105,859 - 3,106,020NCBIRnor6.0
Rnor_5.073,078,559 - 3,078,720UniSTSRnor5.0
RGSC_v3.471,981,102 - 1,981,263UniSTSRGSC3.4
Celera7980,989 - 981,150UniSTS
Cytogenetic Map7q11UniSTS
RH132933  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.271,129,935 - 1,130,155 (+)MAPPERmRatBN7.2
Rnor_6.073,125,011 - 3,125,230NCBIRnor6.0
Rnor_5.073,097,711 - 3,097,930UniSTSRnor5.0
RGSC_v3.472,000,254 - 2,000,473UniSTSRGSC3.4
Celera71,000,141 - 1,000,360UniSTS
Cytogenetic Map7q11UniSTS
RH143244  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.271,127,589 - 1,127,699 (+)MAPPERmRatBN7.2
Rnor_6.073,122,665 - 3,122,774NCBIRnor6.0
Rnor_5.073,095,365 - 3,095,474UniSTSRnor5.0
RGSC_v3.471,997,908 - 1,998,017UniSTSRGSC3.4
Celera7997,795 - 997,904UniSTS
Cytogenetic Map7q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001079936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC098012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC093595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000061878   ⟹   ENSRNOP00000058595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl71,693,989 - 1,712,780 (-)Ensembl
mRatBN7.2 Ensembl71,109,454 - 1,128,268 (-)Ensembl
Rnor_6.0 Ensembl73,104,551 - 3,123,297 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099796   ⟹   ENSRNOP00000079594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl71,696,288 - 1,712,780 (-)Ensembl
mRatBN7.2 Ensembl71,109,459 - 1,119,940 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120020   ⟹   ENSRNOP00000092616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl71,109,468 - 1,119,561 (-)Ensembl
RefSeq Acc Id: NM_001079936   ⟹   NP_001073405
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,693,971 - 1,712,736 (-)NCBI
mRatBN7.271,109,454 - 1,128,222 (-)NCBI
Rnor_6.073,104,533 - 3,123,297 (-)NCBI
Rnor_5.073,077,228 - 3,096,075 (-)NCBI
RGSC_v3.471,979,776 - 1,998,540 (-)RGD
Celera7979,663 - 998,427 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240750   ⟹   XP_006240812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,693,971 - 1,712,936 (-)NCBI
mRatBN7.271,109,449 - 1,128,348 (-)NCBI
Rnor_6.073,104,530 - 3,123,384 (-)NCBI
Rnor_5.073,077,228 - 3,096,075 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240751   ⟹   XP_006240813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,693,971 - 1,712,820 (-)NCBI
mRatBN7.271,109,449 - 1,128,325 (-)NCBI
Rnor_6.073,104,530 - 3,123,372 (-)NCBI
Rnor_5.073,077,228 - 3,096,075 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240752   ⟹   XP_006240814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,693,971 - 1,712,785 (-)NCBI
mRatBN7.271,109,449 - 1,128,295 (-)NCBI
Rnor_6.073,104,530 - 3,123,356 (-)NCBI
Rnor_5.073,077,228 - 3,096,075 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078547   ⟹   XP_038934475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,693,971 - 1,712,763 (-)NCBI
mRatBN7.271,109,449 - 1,128,004 (-)NCBI
RefSeq Acc Id: XM_039078548   ⟹   XP_038934476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr871,693,971 - 1,712,758 (-)NCBI
mRatBN7.271,109,449 - 1,128,205 (-)NCBI
RefSeq Acc Id: NP_001073405   ⟸   NM_001079936
- UniProtKB: A1L1J8 (UniProtKB/TrEMBL),   F7F3T1 (UniProtKB/TrEMBL),   A0A8I6AII6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240812   ⟸   XM_006240750
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006240813   ⟸   XM_006240751
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006240814   ⟸   XM_006240752
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000058595   ⟸   ENSRNOT00000061878
RefSeq Acc Id: XP_038934476   ⟸   XM_039078548
- Peptide Label: isoform X1
- UniProtKB: A1L1J8 (UniProtKB/TrEMBL),   F7F3T1 (UniProtKB/TrEMBL),   A0A8I6AII6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934475   ⟸   XM_039078547
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000079594   ⟸   ENSRNOT00000099796
Ensembl Acc Id: ENSRNOP00000092616   ⟸   ENSRNOT00000120020

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1L1J8-F1-model_v2 AlphaFold A1L1J8 1-215 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694947
Promoter ID:EPDNEW_R5472
Type:initiation region
Name:Rab5b_1
Description:RAB5B, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.073,123,352 - 3,123,412EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306489 AgrOrtholog
BioCyc Gene G2FUF-35340 BioCyc
Ensembl Genes ENSRNOG00000006130 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061878 ENTREZGENE
  ENSRNOT00000061878.6 UniProtKB/TrEMBL
  ENSRNOT00000099796.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7098463 IMAGE-MGC_LOAD
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Ras_GTPase UniProtKB/TrEMBL
  Small_GTP-bd UniProtKB/TrEMBL
KEGG Report rno:288779 UniProtKB/TrEMBL
MGC_CLONE MGC:156695 IMAGE-MGC_LOAD
NCBI Gene 288779 ENTREZGENE
PANTHER PTHR47978 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PhenoGen Rab5b PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006130 RatGTEx
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I5ZN01_RAT UniProtKB/TrEMBL
  A0A8I6AII6 ENTREZGENE
  A1L1J8 ENTREZGENE, UniProtKB/TrEMBL
  F7F3T1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rab5b  RAB5B, member RAS oncogene family   Rab5b_predicted  RAB5B, member RAS oncogene family (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rab5b_predicted  RAB5B, member RAS oncogene family (predicted)      Symbol and Name status set to approved 70820 APPROVED