Tent2 (terminal nucleotidyltransferase 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tent2 (terminal nucleotidyltransferase 2) Rattus norvegicus
Analyze
Symbol: Tent2
Name: terminal nucleotidyltransferase 2
RGD ID: 1306438
Description: Predicted to enable poly(A) RNA polymerase activity. Involved in several processes, including RNA polyadenylation at postsynapse; dark adaptation; and nervous system development. Is active in glutamatergic synapse; perforant pathway to dendrate granule cell synapse; and postsynapse. Orthologous to human TENT2 (terminal nucleotidyltransferase 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC361878; MGC93684; PAP associated domain containing 4; PAP-associated domain-containing protein 4; Papd4; poly(A) RNA polymerase D4, non-canonical; poly(A) RNA polymerase GLD2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8226,115,150 - 26,167,465 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl226,115,240 - 26,167,113 (-)EnsemblGRCr8
mRatBN7.2224,380,135 - 24,432,099 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl224,380,225 - 24,432,099 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx231,408,717 - 31,459,235 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0229,509,010 - 29,559,528 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0224,338,226 - 24,389,040 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0222,746,290 - 22,798,252 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl222,747,547 - 22,798,214 (-)Ensemblrn6Rnor6.0
Rnor_5.0241,944,033 - 41,996,513 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4223,419,885 - 23,471,423 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera220,461,236 - 20,512,260 (-)NCBICelera
RGSC_v3.1223,340,255 - 23,391,792 (-)NCBI
Cytogenetic Map2q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The multitalented Mediator complex. Carlsten JO, etal., Trends Biochem Sci. 2013 Nov;38(11):531-7. doi: 10.1016/j.tibs.2013.08.007. Epub 2013 Sep 25.
2. Developmental and functional expression of miRNA-stability related genes in the nervous system. de Sousa E, etal., PLoS One. 2013 May 20;8(5):e56908. doi: 10.1371/journal.pone.0056908. Print 2013.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. A possible new mechanism for the control of miRNA expression in neurons. Kinjo ER, etal., Exp Neurol. 2013 Oct;248:546-58. doi: 10.1016/j.expneurol.2013.07.022. Epub 2013 Aug 7.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. Dendritic GluN2A synthesis mediates activity-induced NMDA receptor insertion. Swanger SA, etal., J Neurosci. 2013 May 15;33(20):8898-908. doi: 10.1523/JNEUROSCI.0289-13.2013.
10. Bidirectional control of mRNA translation and synaptic plasticity by the cytoplasmic polyadenylation complex. Udagawa T, etal., Mol Cell. 2012 Jul 27;47(2):253-66. doi: 10.1016/j.molcel.2012.05.016. Epub 2012 Jun 21.
Additional References at PubMed
PMID:12477932   PMID:15070731   PMID:17927953   PMID:18172165   PMID:23200856   PMID:24029230  


Genomics

Comparative Map Data
Tent2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8226,115,150 - 26,167,465 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl226,115,240 - 26,167,113 (-)EnsemblGRCr8
mRatBN7.2224,380,135 - 24,432,099 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl224,380,225 - 24,432,099 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx231,408,717 - 31,459,235 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0229,509,010 - 29,559,528 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0224,338,226 - 24,389,040 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0222,746,290 - 22,798,252 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl222,747,547 - 22,798,214 (-)Ensemblrn6Rnor6.0
Rnor_5.0241,944,033 - 41,996,513 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4223,419,885 - 23,471,423 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera220,461,236 - 20,512,260 (-)NCBICelera
RGSC_v3.1223,340,255 - 23,391,792 (-)NCBI
Cytogenetic Map2q12NCBI
TENT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38579,612,441 - 79,688,246 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl579,611,811 - 79,688,246 (+)Ensemblhg38GRCh38
GRCh37578,908,264 - 78,984,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36578,944,152 - 79,017,858 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34578,944,151 - 79,017,858NCBI
Celera574,808,017 - 74,882,249 (+)NCBICelera
Cytogenetic Map5q14.1NCBI
HuRef574,116,241 - 74,190,376 (+)NCBIHuRef
CHM1_1578,341,332 - 78,415,539 (+)NCBICHM1_1
T2T-CHM13v2.0580,096,704 - 80,172,520 (+)NCBIT2T-CHM13v2.0
Tent2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391393,282,363 - 93,330,662 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1393,282,790 - 93,328,893 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381393,145,855 - 93,192,435 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1393,146,282 - 93,192,385 (-)Ensemblmm10GRCm38
MGSCv371393,917,355 - 93,962,238 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361394,248,153 - 94,293,036 (-)NCBIMGSCv36mm8
Celera1396,760,820 - 96,805,025 (-)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1347.81NCBI
Tent2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542521,517,755 - 21,576,068 (-)Ensembl
ChiLan1.0NW_00495542521,518,154 - 21,576,068 (-)NCBIChiLan1.0ChiLan1.0
TENT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2435,613,532 - 35,687,409 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1533,767,158 - 33,841,032 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0535,622,645 - 35,696,451 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1535,893,841 - 35,966,960 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl535,893,841 - 35,966,932 (-)EnsemblpanPan2panpan1.1
TENT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1327,273,188 - 27,335,897 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl327,274,519 - 27,335,783 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha328,512,967 - 28,575,608 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0327,192,100 - 27,254,836 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl327,192,104 - 27,254,724 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1327,132,007 - 27,194,667 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0327,108,816 - 27,171,462 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0327,389,466 - 27,452,121 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tent2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213183,393,711 - 183,457,412 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365497,408,563 - 7,463,895 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365497,401,532 - 7,465,264 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl288,328,258 - 88,388,241 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1288,328,250 - 88,388,242 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2290,128,225 - 90,182,371 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TENT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1473,825,537 - 73,899,849 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl473,825,557 - 73,901,840 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604922,672,749 - 22,747,063 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tent2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248694,089,282 - 4,147,211 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248694,089,253 - 4,148,455 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tent2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13203,136,083 - 203,181,797 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tent2
348 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:472
Count of miRNA genes:225
Interacting mature miRNAs:265
Transcripts:ENSRNOT00000016135
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat

Markers in Region
RH131059  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2224,380,431 - 24,380,611 (+)MAPPERmRatBN7.2
Rnor_6.0222,746,587 - 22,746,766NCBIRnor6.0
Rnor_5.0241,944,330 - 41,944,509UniSTSRnor5.0
RGSC_v3.4223,418,927 - 23,419,106UniSTSRGSC3.4
Celera220,460,278 - 20,460,457UniSTS
Cytogenetic Map2q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001008372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010063621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC085771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000016135   ⟹   ENSRNOP00000016135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl226,115,240 - 26,167,113 (-)Ensembl
mRatBN7.2 Ensembl224,380,225 - 24,432,099 (-)Ensembl
Rnor_6.0 Ensembl222,747,547 - 22,798,214 (-)Ensembl
RefSeq Acc Id: NM_001008372   ⟹   NP_001008373
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8226,116,405 - 26,167,083 (-)NCBI
mRatBN7.2224,381,390 - 24,432,069 (-)NCBI
Rnor_6.0222,747,545 - 22,798,214 (-)NCBI
Rnor_5.0241,944,033 - 41,996,513 (-)NCBI
RGSC_v3.4223,419,885 - 23,471,423 (-)RGD
Celera220,461,236 - 20,512,260 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231778   ⟹   XP_006231840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8226,115,150 - 26,167,465 (-)NCBI
mRatBN7.2224,380,135 - 24,432,098 (-)NCBI
Rnor_6.0222,746,290 - 22,798,252 (-)NCBI
Rnor_5.0241,944,033 - 41,996,513 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039102524   ⟹   XP_038958452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8226,115,150 - 26,167,465 (-)NCBI
mRatBN7.2224,380,135 - 24,432,099 (-)NCBI
RefSeq Acc Id: XM_039102525   ⟹   XP_038958453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8226,115,150 - 26,167,465 (-)NCBI
mRatBN7.2224,380,135 - 24,432,099 (-)NCBI
RefSeq Acc Id: XM_039102526   ⟹   XP_038958454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8226,115,150 - 26,167,465 (-)NCBI
mRatBN7.2224,380,135 - 24,432,099 (-)NCBI
RefSeq Acc Id: XM_039102528   ⟹   XP_038958456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8226,124,392 - 26,167,465 (-)NCBI
mRatBN7.2224,389,379 - 24,432,099 (-)NCBI
RefSeq Acc Id: XM_063282026   ⟹   XP_063138096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8226,115,150 - 26,167,465 (-)NCBI
RefSeq Acc Id: XM_063282027   ⟹   XP_063138097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8226,115,150 - 26,167,465 (-)NCBI
RefSeq Acc Id: XR_005500310
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8226,124,394 - 26,167,465 (-)NCBI
mRatBN7.2224,389,381 - 24,432,099 (-)NCBI
RefSeq Acc Id: XR_010063621
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8226,116,401 - 26,167,465 (-)NCBI
RefSeq Acc Id: NP_001008373   ⟸   NM_001008372
- UniProtKB: Q5U315 (UniProtKB/Swiss-Prot),   A6I4S9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231840   ⟸   XM_006231778
- Peptide Label: isoform X4
- UniProtKB: A0A8L2Q7L8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016135   ⟸   ENSRNOT00000016135
RefSeq Acc Id: XP_038958454   ⟸   XM_039102526
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958452   ⟸   XM_039102524
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958453   ⟸   XM_039102525
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958456   ⟸   XM_039102528
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063138097   ⟸   XM_063282027
- Peptide Label: isoform X4
- UniProtKB: A0A8L2Q7L8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138096   ⟸   XM_063282026
- Peptide Label: isoform X3
- UniProtKB: Q5U315 (UniProtKB/Swiss-Prot),   A6I4S9 (UniProtKB/TrEMBL)
Protein Domains
PAP-associated   Poly(A) RNA polymerase mitochondrial-like central

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U315-F1-model_v2 AlphaFold Q5U315 1-484 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691065
Promoter ID:EPDNEW_R1590
Type:multiple initiation site
Name:Papd4_1
Description:poly RNA polymerase D4, non-canonical
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0222,798,226 - 22,798,286EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306438 AgrOrtholog
BioCyc Gene G2FUF-54853 BioCyc
Ensembl Genes ENSRNOG00000012099 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000016135 ENTREZGENE
Gene3D-CATH 1.10.1410.10 UniProtKB/Swiss-Prot
  3.30.460.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7191068 IMAGE-MGC_LOAD
InterPro MTPAP-like_central UniProtKB/Swiss-Prot
  NT_sf UniProtKB/Swiss-Prot
  PAP_assoc UniProtKB/Swiss-Prot
KEGG Report rno:361878 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93684 IMAGE-MGC_LOAD
NCBI Gene 361878 ENTREZGENE
PANTHER POLY A POLYMERASE CID PAP -RELATED UniProtKB/Swiss-Prot
  POLY(A) RNA POLYMERASE GLD2 UniProtKB/Swiss-Prot
Pfam MTPAP-like_central UniProtKB/Swiss-Prot
  PAP_assoc UniProtKB/Swiss-Prot
PhenoGen Tent2 PhenoGen
RatGTEx ENSRNOG00000012099 RatGTEx
Superfamily-SCOP PAP/OAS1 substrate-binding domain UniProtKB/Swiss-Prot
  SSF81301 UniProtKB/Swiss-Prot
UniProt A0A8L2Q7L8 ENTREZGENE, UniProtKB/TrEMBL
  A6I4S9 ENTREZGENE, UniProtKB/TrEMBL
  GLD2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-04-27 Tent2  terminal nucleotidyltransferase 2  Papd4  poly(A) RNA polymerase D4, non-canonical  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-07-27 Papd4  poly(A) RNA polymerase D4, non-canonical  Papd4  PAP associated domain containing 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Papd4  PAP associated domain containing 4  Papd4_predicted  PAP associated domain containing 4 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Papd4_predicted  PAP associated domain containing 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED