Eif1a (eukaryotic translation initiation factor 1A) - Rat Genome Database

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Gene: Eif1a (eukaryotic translation initiation factor 1A) Rattus norvegicus
Analyze
Symbol: Eif1a
Name: eukaryotic translation initiation factor 1A
RGD ID: 1306331
Description: Enables ribosomal large subunit binding activity. Predicted to be involved in translational initiation. Predicted to be active in cytoplasm. Orthologous to human EIF1AX (eukaryotic translation initiation factor 1A X-linked) and EIF1AY (eukaryotic translation initiation factor 1A Y-linked); PARTICIPATES IN translation initiation pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ab1-287; eIF-1A; eIF-4C; eukaryotic translation initiation factor 4C; liver regeneration-related protein LRRG048; LOC317163; X-linked eukaryotic translation initiation factor 1A
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81841,512,298 - 41,524,645 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1841,503,180 - 41,549,696 (+)EnsemblGRCr8
mRatBN7.21839,325,695 - 39,338,043 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1839,325,202 - 39,338,696 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1841,358,912 - 41,371,258 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01842,061,155 - 42,073,501 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01839,854,276 - 39,866,622 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01840,586,315 - 40,598,661 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1840,586,315 - 40,597,671 (+)Ensemblrn6Rnor6.0
Rnor_5.01840,240,997 - 40,253,343 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41840,808,057 - 40,819,421 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1837,577,743 - 37,589,140 (+)NCBICelera
RGSC_v3.11840,845,597 - 40,856,958 (+)NCBI
Cytogenetic Map18q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The scanning mechanism of eukaryotic translation initiation. Hinnebusch AG Annu Rev Biochem. 2014;83:779-812. doi: 10.1146/annurev-biochem-060713-035802. Epub 2014 Jan 29.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Topography of ribosomes and initiation complexes from rat liver as revealed by atomic force microscopy. Wu X, etal., Biol Chem. 1997 May;378(5):363-72.
Additional References at PubMed
PMID:12477932   PMID:25943107  


Genomics

Comparative Map Data
Eif1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81841,512,298 - 41,524,645 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1841,503,180 - 41,549,696 (+)EnsemblGRCr8
mRatBN7.21839,325,695 - 39,338,043 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1839,325,202 - 39,338,696 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1841,358,912 - 41,371,258 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01842,061,155 - 42,073,501 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01839,854,276 - 39,866,622 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01840,586,315 - 40,598,661 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1840,586,315 - 40,597,671 (+)Ensemblrn6Rnor6.0
Rnor_5.01840,240,997 - 40,253,343 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41840,808,057 - 40,819,421 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1837,577,743 - 37,589,140 (+)NCBICelera
RGSC_v3.11840,845,597 - 40,856,958 (+)NCBI
Cytogenetic Map18q11NCBI
Eif1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391846,730,771 - 46,743,292 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1846,730,768 - 46,749,523 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381846,597,704 - 46,610,225 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1846,597,701 - 46,616,456 (+)Ensemblmm10GRCm38
MGSCv371846,757,358 - 46,769,879 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361846,723,035 - 46,735,539 (+)NCBIMGSCv36mm8
Celera1847,957,314 - 47,969,746 (+)NCBICelera
Cytogenetic Map18CNCBI
cM Map1824.68NCBI

Variants

.
Variants in Eif1a
47 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:77
Interacting mature miRNAs:91
Transcripts:ENSRNOT00000041237
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)183857591983575919Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050563968306Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183199089176990891Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183161050585493247Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)183337915878379158Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)184046238385462383Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)183199089176990891Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)183337915878379158Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183161050577371277Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)183337915878379158Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)183337915878379158Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183152278376522783Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)183337915878379158Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183337915878379158Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)183337915878379158Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183161050577371277Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183612162681121626Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)183199089176990891Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183164450879484311Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)183199089176990891Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183161050572538878Rat

Markers in Region
RH137026  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21839,336,870 - 39,337,038 (+)MAPPERmRatBN7.2
Rnor_6.01840,597,489 - 40,597,656NCBIRnor6.0
Rnor_5.01840,252,171 - 40,252,338UniSTSRnor5.0
RGSC_v3.41840,819,232 - 40,819,399UniSTSRGSC3.4
Celera1837,588,951 - 37,589,118UniSTS
Cytogenetic Map18q11UniSTS
RH139172  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21839,335,985 - 39,336,148 (+)MAPPERmRatBN7.2
Rnor_6.01840,596,604 - 40,596,766NCBIRnor6.0
Rnor_5.01840,251,286 - 40,251,448UniSTSRnor5.0
RGSC_v3.41840,818,347 - 40,818,509UniSTSRGSC3.4
Celera1837,588,066 - 37,588,228UniSTS
Cytogenetic Map18q11UniSTS
RH140145  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21839,337,334 - 39,337,549 (+)MAPPERmRatBN7.2
Rnor_6.01840,597,953 - 40,598,167NCBIRnor6.0
Rnor_5.01840,252,635 - 40,252,849UniSTSRnor5.0
RGSC_v3.41840,819,696 - 40,819,910UniSTSRGSC3.4
Celera1837,589,415 - 37,589,629UniSTS
Cytogenetic Map18q11UniSTS
RH141021  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21839,336,397 - 39,336,585 (+)MAPPERmRatBN7.2
Rnor_6.01840,597,016 - 40,597,203NCBIRnor6.0
Rnor_5.01840,251,698 - 40,251,885UniSTSRnor5.0
RGSC_v3.41840,818,759 - 40,818,946UniSTSRGSC3.4
Celera1837,588,478 - 37,588,665UniSTS
Cytogenetic Map18q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000041237   ⟹   ENSRNOP00000046345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1841,512,652 - 41,524,645 (+)Ensembl
mRatBN7.2 Ensembl1839,326,041 - 39,338,696 (+)Ensembl
Rnor_6.0 Ensembl1840,586,315 - 40,597,671 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087984   ⟹   ENSRNOP00000069410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1841,512,272 - 41,549,696 (+)Ensembl
mRatBN7.2 Ensembl1839,325,820 - 39,337,131 (+)Ensembl
Rnor_6.0 Ensembl1840,596,166 - 40,596,691 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099432   ⟹   ENSRNOP00000094920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1841,515,869 - 41,525,994 (+)Ensembl
mRatBN7.2 Ensembl1839,325,202 - 39,338,696 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099676   ⟹   ENSRNOP00000092892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1841,512,307 - 41,528,036 (+)Ensembl
mRatBN7.2 Ensembl1839,325,202 - 39,338,696 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000121417   ⟹   ENSRNOP00000099297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1841,503,180 - 41,525,895 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000160045   ⟹   ENSRNOP00000102515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1841,511,429 - 41,540,786 (+)Ensembl
RefSeq Acc Id: NM_001008773   ⟹   NP_001008773
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81841,512,298 - 41,524,645 (+)NCBI
mRatBN7.21839,325,695 - 39,338,043 (+)NCBI
Rnor_6.01840,586,315 - 40,597,678 (+)NCBI
Rnor_5.01840,240,997 - 40,253,343 (+)NCBI
RGSC_v3.41840,808,057 - 40,819,421 (+)RGD
Celera1837,577,743 - 37,589,140 (+)RGD
Sequence:
RefSeq Acc Id: NM_001394990   ⟹   NP_001381919
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81841,512,298 - 41,524,645 (+)NCBI
mRatBN7.21839,325,695 - 39,338,043 (+)NCBI
RefSeq Acc Id: NM_001394991   ⟹   NP_001381920
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81841,512,652 - 41,524,645 (+)NCBI
mRatBN7.21839,326,049 - 39,338,043 (+)NCBI
RefSeq Acc Id: NP_001008773   ⟸   NM_001008773
- UniProtKB: Q6VV72 (UniProtKB/Swiss-Prot),   A6IWW1 (UniProtKB/TrEMBL),   Q566D5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000046345   ⟸   ENSRNOT00000041237
Ensembl Acc Id: ENSRNOP00000069410   ⟸   ENSRNOT00000087984
Ensembl Acc Id: ENSRNOP00000092892   ⟸   ENSRNOT00000099676
Ensembl Acc Id: ENSRNOP00000094920   ⟸   ENSRNOT00000099432
RefSeq Acc Id: NP_001381919   ⟸   NM_001394990
- UniProtKB: Q6VV72 (UniProtKB/Swiss-Prot),   A6IWW1 (UniProtKB/TrEMBL),   Q566D5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381920   ⟸   NM_001394991
- UniProtKB: Q6VV72 (UniProtKB/Swiss-Prot),   A6IWW1 (UniProtKB/TrEMBL),   Q566D5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000102515   ⟸   ENSRNOT00000160045
Ensembl Acc Id: ENSRNOP00000099297   ⟸   ENSRNOT00000121417
Protein Domains
S1-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6VV72-F1-model_v2 AlphaFold Q6VV72 1-144 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700765
Promoter ID:EPDNEW_R11289
Type:initiation region
Name:Eif1a_1
Description:eukaryotic translation initiation factor 1A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11290  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01840,586,410 - 40,586,470EPDNEW
RGD ID:13700775
Promoter ID:EPDNEW_R11290
Type:single initiation site
Name:Eif1a_2
Description:eukaryotic translation initiation factor 1A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11289  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01840,596,224 - 40,596,284EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306331 AgrOrtholog
BioCyc Gene G2FUF-7627 BioCyc
Ensembl Genes ENSRNOG00000031421 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000041237 ENTREZGENE
  ENSRNOT00000041237.6 UniProtKB/Swiss-Prot
  ENSRNOT00000099432.1 UniProtKB/Swiss-Prot
  ENSRNOT00000099676 ENTREZGENE
  ENSRNOT00000099676.1 UniProtKB/Swiss-Prot
  ENSRNOT00000121417 ENTREZGENE
Gene3D-CATH 2.40.50.140 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7318425 IMAGE-MGC_LOAD
InterPro NA-bd_OB-fold UniProtKB/Swiss-Prot
  RNA-binding_domain_S1_IF1 UniProtKB/Swiss-Prot
  TIF_eIF-1A UniProtKB/Swiss-Prot
  TIF_eIF-1A_CS UniProtKB/Swiss-Prot
KEGG Report rno:317163 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105626 IMAGE-MGC_LOAD
NCBI Gene 317163 ENTREZGENE
PANTHER PTHR21668 UniProtKB/Swiss-Prot
Pfam eIF-1a UniProtKB/Swiss-Prot
PhenoGen Eif1a PhenoGen
PROSITE IF1A UniProtKB/Swiss-Prot
  S1_IF1_TYPE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000031421 RatGTEx
SMART eIF1a UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50249 UniProtKB/Swiss-Prot
UniProt A0A0G2JVA7_RAT UniProtKB/TrEMBL
  A6IWW1 ENTREZGENE, UniProtKB/TrEMBL
  A6IWW3_RAT UniProtKB/TrEMBL
  IF1A_RAT UniProtKB/Swiss-Prot
  Q566D5 ENTREZGENE, UniProtKB/TrEMBL
  Q6VV72 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Eif1a  eukaryotic translation initiation factor 1A  Eif1a_predicted  eukaryotic translation initiation factor 1A (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Eif1a_predicted  eukaryotic translation initiation factor 1A (predicted)      Symbol and Name status set to approved 70820 APPROVED