Fam107a (family with sequence similarity 107, member A) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Fam107a (family with sequence similarity 107, member A) Rattus norvegicus
Analyze
Symbol: Fam107a
Name: family with sequence similarity 107, member A
RGD ID: 1306327
Description: Predicted to enable actin binding activity. Predicted to be involved in several processes, including actin filament organization; regulation of cell junction assembly; and regulation of cytoskeleton organization. Located in neuron projection. Orthologous to human FAM107A (family with sequence similarity 107 member A); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: actin-associated protein FAM107A; downregulated in renal cell carcinoma-like; Drr1; LOC361018; RGD1306327; similar to downregulated in renal cell carcinoma; Tu3a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81519,038,726 - 19,060,644 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1519,038,616 - 19,065,219 (+)EnsemblGRCr8
mRatBN7.21516,608,362 - 16,630,398 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1516,607,205 - 16,630,396 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1518,792,215 - 18,806,234 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01519,750,653 - 19,764,674 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01518,005,560 - 18,019,579 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01518,399,145 - 18,415,959 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1518,399,515 - 18,415,965 (+)Ensemblrn6Rnor6.0
Rnor_5.01522,373,679 - 22,387,948 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41518,598,082 - 18,613,890 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1516,576,520 - 16,590,386 (+)NCBICelera
RGSC_v3.11518,598,081 - 18,613,890 (+)NCBI
Cytogenetic Map15p14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-hexachlorocyclohexane  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chloroprene  (EXP,ISO)
chrysene  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-mannitol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
Erionite  (ISO)
ethanol  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
inulin  (ISO)
manganese atom  (EXP)
manganese(0)  (EXP)
manganese(II) chloride  (EXP)
medroxyprogesterone acetate  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
morphine  (ISO)
nevirapine  (EXP)
nicotine  (ISO)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
poly(I:C)  (EXP)
progesterone  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
titanium dioxide  (ISO)
tremolite asbestos  (ISO)
trichostatin A  (ISO)
Triptolide  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zearalenone  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (IEA,ISO,ISS)
cell projection  (IEA)
cytoplasm  (IEA,ISO,ISS)
focal adhesion  (IEA,ISO,ISS)
glutamatergic synapse  (ISO)
neuron projection  (IBA,IDA,ISO)
nuclear speck  (IEA,ISO)
nucleus  (IEA,ISO,ISS)
postsynaptic actin cytoskeleton  (ISO)
presynaptic actin cytoskeleton  (ISO)
ruffle membrane  (IEA,ISO,ISS)
stress fiber  (IBA,IEA,ISO,ISS)
synapse  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. DRR1 is expressed in the developing nervous system and downregulated during neuroblastoma carcinogenesis. Asano Y, etal., Biochem Biophys Res Commun. 2010 Apr 9;394(3):829-35. doi: 10.1016/j.bbrc.2010.03.085. Epub 2010 Mar 16.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Tumor suppressor down-regulated in renal cell carcinoma 1 (DRR1) is a stress-induced actin bundling factor that modulates synaptic efficacy and cognition. Schmidt MV, etal., Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):17213-8. doi: 10.1073/pnas.1103318108. Epub 2011 Oct 3.
Additional References at PubMed
PMID:10564580   PMID:12477932   PMID:20543869   PMID:28604741   PMID:33895549  


Genomics

Comparative Map Data
Fam107a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81519,038,726 - 19,060,644 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1519,038,616 - 19,065,219 (+)EnsemblGRCr8
mRatBN7.21516,608,362 - 16,630,398 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1516,607,205 - 16,630,396 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1518,792,215 - 18,806,234 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01519,750,653 - 19,764,674 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01518,005,560 - 18,019,579 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01518,399,145 - 18,415,959 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1518,399,515 - 18,415,965 (+)Ensemblrn6Rnor6.0
Rnor_5.01522,373,679 - 22,387,948 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41518,598,082 - 18,613,890 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1516,576,520 - 16,590,386 (+)NCBICelera
RGSC_v3.11518,598,081 - 18,613,890 (+)NCBI
Cytogenetic Map15p14NCBI
FAM107A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38358,564,117 - 58,627,610 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl358,564,117 - 58,627,651 (-)Ensemblhg38GRCh38
GRCh37358,549,844 - 58,613,337 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36358,524,884 - 58,538,531 (-)NCBIBuild 36Build 36hg18NCBI36
Celera358,563,266 - 58,576,915 (-)NCBICelera
Cytogenetic Map3p14.3-p14.2NCBI
HuRef358,646,246 - 58,660,421 (-)NCBIHuRef
CHM1_1358,499,976 - 58,513,625 (-)NCBICHM1_1
T2T-CHM13v2.0358,604,489 - 58,667,988 (-)NCBIT2T-CHM13v2.0
Fam107a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391414,152,166 - 14,173,503 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1414,151,750 - 14,173,499 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38148,296,270 - 8,317,607 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl148,296,274 - 8,318,023 (-)Ensemblmm10GRCm38
MGSCv37149,128,792 - 9,142,290 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36147,090,034 - 7,103,532 (-)NCBIMGSCv36mm8
Celera143,915,368 - 3,928,913 (-)NCBICelera
Cytogenetic Map14A1NCBI
cM Map144.8NCBI
Fam107a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554301,604,540 - 1,625,154 (+)Ensembl
ChiLan1.0NW_0049554301,606,696 - 1,625,098 (+)NCBIChiLan1.0ChiLan1.0
FAM107A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2258,528,529 - 58,591,904 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1358,533,299 - 58,596,679 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0358,494,342 - 58,557,712 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1359,903,602 - 59,967,013 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl359,903,602 - 59,967,013 (-)EnsemblpanPan2panpan1.1
FAM107A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12032,047,132 - 32,099,815 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2032,047,625 - 32,097,585 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2031,972,238 - 32,024,790 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02032,290,839 - 32,367,014 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2032,290,813 - 32,367,011 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12031,771,584 - 31,824,038 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02032,127,412 - 32,179,954 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02032,299,684 - 32,352,403 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam107a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118169,300,479 - 169,347,766 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364732,438,626 - 2,484,071 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364732,438,995 - 2,483,746 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM107A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11340,276,896 - 40,369,708 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21344,285,776 - 44,316,537 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM107A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12219,859,853 - 19,923,256 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2219,859,809 - 19,923,487 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041146,897,733 - 146,961,399 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam107a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248225,579,690 - 5,582,321 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248225,577,686 - 5,593,608 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fam107a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11278,701,274 - 78,722,316 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fam107a
156 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:926
Count of miRNA genes:275
Interacting mature miRNAs:334
Transcripts:ENSRNOT00000061158, ENSRNOT00000071273
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat

Markers in Region
RH138344  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21516,628,713 - 16,628,849 (+)MAPPERmRatBN7.2
Rnor_6.01518,414,274 - 18,414,409NCBIRnor6.0
Rnor_5.01522,386,294 - 22,386,429UniSTSRnor5.0
RGSC_v3.41518,612,236 - 18,612,371UniSTSRGSC3.4
RH 3.4 Map15140.1UniSTS
Cytogenetic Map15p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 89 88 57 65 57 6 327 165 11 138 81 92 31 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000061158   ⟹   ENSRNOP00000057872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1519,046,491 - 19,060,642 (+)Ensembl
mRatBN7.2 Ensembl1516,616,333 - 16,630,396 (+)Ensembl
Rnor_6.0 Ensembl1518,399,733 - 18,415,959 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000071273   ⟹   ENSRNOP00000063922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1519,038,616 - 19,060,636 (+)Ensembl
mRatBN7.2 Ensembl1516,607,205 - 16,630,396 (+)Ensembl
Rnor_6.0 Ensembl1518,399,515 - 18,415,965 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142770   ⟹   ENSRNOP00000107599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1519,046,338 - 19,065,219 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000171945   ⟹   ENSRNOP00000099417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1519,046,338 - 19,060,642 (+)Ensembl
RefSeq Acc Id: NM_001025129   ⟹   NP_001020300
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,046,581 - 19,060,644 (+)NCBI
mRatBN7.21516,616,333 - 16,630,398 (+)NCBI
Rnor_6.01518,399,733 - 18,415,959 (+)NCBI
Rnor_5.01522,373,679 - 22,387,948 (+)NCBI
RGSC_v3.41518,598,082 - 18,613,890 (+)RGD
Celera1516,576,520 - 16,590,386 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093463   ⟹   XP_038949391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,038,726 - 19,060,643 (+)NCBI
mRatBN7.21516,608,362 - 16,630,397 (+)NCBI
RefSeq Acc Id: XM_039093464   ⟹   XP_038949392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,046,614 - 19,060,643 (+)NCBI
mRatBN7.21516,616,367 - 16,630,397 (+)NCBI
RefSeq Acc Id: XM_039093465   ⟹   XP_038949393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,046,652 - 19,060,643 (+)NCBI
mRatBN7.21516,616,407 - 16,630,397 (+)NCBI
RefSeq Acc Id: NP_001020300   ⟸   NM_001025129
- UniProtKB: M0R3K6 (UniProtKB/Swiss-Prot),   Q566E1 (UniProtKB/TrEMBL),   F1M8H7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000057872   ⟸   ENSRNOT00000061158
Ensembl Acc Id: ENSRNOP00000063922   ⟸   ENSRNOT00000071273
RefSeq Acc Id: XP_038949391   ⟸   XM_039093463
- Peptide Label: isoform X1
- UniProtKB: A0A8L2QVA1 (UniProtKB/TrEMBL),   A6K0B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949392   ⟸   XM_039093464
- Peptide Label: isoform X2
- UniProtKB: M0R3K6 (UniProtKB/Swiss-Prot),   F1M8H7 (UniProtKB/TrEMBL),   Q566E1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949393   ⟸   XM_039093465
- Peptide Label: isoform X2
- UniProtKB: M0R3K6 (UniProtKB/Swiss-Prot),   F1M8H7 (UniProtKB/TrEMBL),   Q566E1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000099417   ⟸   ENSRNOT00000171945
Ensembl Acc Id: ENSRNOP00000107599   ⟸   ENSRNOT00000142770

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R3K6-F1-model_v2 AlphaFold M0R3K6 1-131 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699587
Promoter ID:EPDNEW_R10109
Type:initiation region
Name:Fam107a_1
Description:family with sequence similarity 107, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01518,399,724 - 18,399,784EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306327 AgrOrtholog
BioCyc Gene G2FUF-14299 BioCyc
Ensembl Genes ENSRNOG00000033261 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000071273 ENTREZGENE
  ENSRNOT00000171945 ENTREZGENE
IMAGE_CLONE IMAGE:7316049 IMAGE-MGC_LOAD
InterPro FAM107 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105610 IMAGE-MGC_LOAD
NCBI Gene 361018 ENTREZGENE
PANTHER ACTIN-ASSOCIATED PROTEIN FAM107A UniProtKB/Swiss-Prot
  PTHR16768 UniProtKB/Swiss-Prot
Pfam DUF1151 UniProtKB/Swiss-Prot
PhenoGen Fam107a PhenoGen
RatGTEx ENSRNOG00000033261 RatGTEx
UniProt A0A8L2QVA1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LRC8_RAT UniProtKB/TrEMBL
  A0ABZ3NNC9_RAT UniProtKB/TrEMBL
  A6K0B2 ENTREZGENE, UniProtKB/TrEMBL
  F107A_RAT UniProtKB/Swiss-Prot
  F1M8H7 ENTREZGENE
  M0R3K6 ENTREZGENE
  Q566E1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Fam107a  family with sequence similarity 107, member A  LOC100364831  downregulated in renal cell carcinoma-like  Data merged from RGD:2320234 1643240 APPROVED
2010-05-05 LOC100364831  downregulated in renal cell carcinoma-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-05-15 Fam107a  family with sequence similarity 107, member A  RGD1306327  similar to downregulated in renal cell carcinoma  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1306327  similar to downregulated in renal cell carcinoma  RGD1306327_predicted  similar to downregulated in renal cell carcinoma (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306327_predicted  similar to downregulated in renal cell carcinoma (predicted)  LOC361018_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361018_predicted  similar to downregulated in renal cell carcinoma (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL