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Gene: Tbc1d24 (TBC1 domain family, member 24) Rattus norvegicus

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Symbol:

Tbc1d24

Name:

TBC1 domain family, member 24

RGD ID:

1306143

Description:

Predicted to enable GTPase activator activity. Involved in positive regulation of dendrite morphogenesis; positive regulation of excitatory postsynaptic potential; and positive regulation of neuron migration. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in DOORS syndrome; epilepsy (multiple); and nonsyndromic deafness (multiple). Orthologous to human TBC1D24 (TBC1 domain family member 24); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC287110; RGD1306143; similar to CG9339-PA; TBC1 domain family member 24

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TBC1D24 (TBC1 domain family member 24)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Tbc1d24 (TBC1 domain family, member 24)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Tbc1d24 (TBC1 domain family member 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TBC1D24 (TBC1 domain family member 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TBC1D24 (TBC1 domain family member 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tbc1d24 (TBC1 domain family member 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TBC1D24 (TBC1 domain family member 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TBC1D24 (TBC1 domain family member 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tbc1d24 (TBC1 domain family member 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tbc1d24 (TBC1 domain family member 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tbc1d24 (TBC1 domain family, member 24)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TBC1D24 (TBC1 domain family member 24)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tbc1d24 (TBC1 domain family, member 24)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tbc1d24 (TBC1 domain family, member 24)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tbc-7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tbc-7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	sky	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	sky	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tbc1d24.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tbc1d24.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	13,711,930 - 13,740,902 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	13,714,833 - 13,740,473 (-)	Ensembl				GRCr8
mRatBN7.2	10	13,205,819 - 13,236,013 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	13,209,895 - 13,236,050 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	17,955,085 - 17,980,715 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	17,443,924 - 17,469,554 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	12,942,419 - 12,968,398 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	13,551,100 - 13,576,739 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	13,551,100 - 13,558,384 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	13,367,060 - 13,392,774 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	13,429,738 - 13,456,667 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	12,896,302 - 12,921,877 (-)	NCBI		Celera
RGSC_v3.1	10	13,432,283 - 13,444,158 (-)	NCBI
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant nocturnal frontal lobe epilepsy (ISO)

autosomal dominant nonsyndromic deafness 65 (ISO)

autosomal recessive nonsyndromic deafness 86 (ISO)

autosomal recessive nonsyndromic deafness 9 (ISO)

benign epilepsy with centrotemporal spikes (ISO)

developmental and epileptic encephalopathy 1 (ISO)

developmental and epileptic encephalopathy 16 (ISO,ISS)

Developmental Disabilities (ISO)

DOORS syndrome (ISO)

Dysarthria (ISO)

early myoclonic encephalopathy (ISO)

epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Myoclonic Epilepsy, Familial Infantile (ISO)

myoclonic-atonic epilepsy (ISO)

Myoclonus (ISO)

Nervous System Malformations (ISO)

nonsyndromic deafness (ISO)

Parkinsonism (ISO)

pathologic nystagmus (ISO)

Presbycusis (ISO)

progressive myoclonus epilepsy (ISO)

progressive myoclonus epilepsy 1B (ISO)

Rolandic epilepsy-paroxysmal exercise-induced dystonia-writer's cramp syndrome (ISO)

Tremor (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

choline (ISO)

cobalt dichloride (ISO)

cocaine (EXP)

copper atom (ISO)

copper(0) (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

entinostat (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

nickel atom (ISO)

oxaliplatin (EXP)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triptonide (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon development (ISO)

cellular response to oxidative stress (IEA,ISO)

dendrite development (ISO)

negative regulation of cellular response to oxidative stress (IEA,ISO)

negative regulation of peptidyl-cysteine S-nitrosylation (ISO)

neuron projection development (IEA,ISO,ISS)

positive regulation of dendrite morphogenesis (IMP)

positive regulation of excitatory postsynaptic potential (IMP)

positive regulation of neuron migration (IMP)

regulation of cilium assembly (ISO)

synaptic vesicle endocytosis (ISO)

Cellular Component

cell junction (IEA,ISO)

cytoplasm (IEA,ISO,ISS)

cytoplasmic vesicle (IEA)

cytoplasmic vesicle membrane (IEA)

neuromuscular junction (ISS)

plasma membrane (IBA,IEA,ISO)

presynapse (IEA)

terminal bouton (ISS)

Molecular Function

GTPase activator activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	TBC1D24 mutation causes autosomal-dominant nonsyndromic hearing loss.	Azaiez H, etal., Hum Mutat. 2014 Jul;35(7):819-23. doi: 10.1002/humu.22557. Epub 2014 May 6.
2.	Recessive TBC1D24 Mutations Are Frequent in Moroccan Non-Syndromic Hearing Loss Pedigrees.	Bakhchane A, etal., PLoS One. 2015 Sep 15;10(9):e0138072. doi: 10.1371/journal.pone.0138072. eCollection 2015.
3.	A focal epilepsy and intellectual disability syndrome is due to a mutation in TBC1D24.	Corbett MA, etal., Am J Hum Genet. 2010 Sep 10;87(3):371-5. doi: 10.1016/j.ajhg.2010.08.001.
4.	TBC1D24 regulates neuronal migration and maturation through modulation of the ARF6-dependent pathway.	Falace A, etal., Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2337-42. doi: 10.1073/pnas.1316294111. Epub 2014 Jan 27.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Novel compound heterozygous mutations in TBC1D24 cause familial malignant migrating partial seizures of infancy.	Milh M, etal., Hum Mutat. 2013 Jun;34(6):869-72. doi: 10.1002/humu.22318. Epub 2013 Apr 12.
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	Homozygous TBC1D24 mutation in two siblings with familial infantile myoclonic epilepsy (FIME) and moderate intellectual disability.	Poulat AL, etal., Epilepsy Res. 2015 Mar;111:72-7. doi: 10.1016/j.eplepsyres.2015.01.008. Epub 2015 Jan 25.
9.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:17646400	PMID:20727515	PMID:26668325	PMID:30335140

Genomics

Comparative Map Data

Tbc1d24
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	13,711,930 - 13,740,902 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	13,714,833 - 13,740,473 (-)	Ensembl				GRCr8
mRatBN7.2	10	13,205,819 - 13,236,013 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	13,209,895 - 13,236,050 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	17,955,085 - 17,980,715 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	17,443,924 - 17,469,554 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	12,942,419 - 12,968,398 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	13,551,100 - 13,576,739 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	13,551,100 - 13,558,384 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	13,367,060 - 13,392,774 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	13,429,738 - 13,456,667 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	12,896,302 - 12,921,877 (-)	NCBI		Celera
RGSC_v3.1	10	13,432,283 - 13,444,158 (-)	NCBI
Cytogenetic Map	10	q12	NCBI

TBC1D24
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	2,475,127 - 2,505,730 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	2,475,051 - 2,509,671 (+)	Ensembl			hg38	GRCh38
GRCh37	16	2,525,128 - 2,555,731 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	2,465,148 - 2,493,500 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	2,760,729 - 2,768,193 (+)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	2,472,128 - 2,481,831 (+)	NCBI		HuRef
CHM1_1	16	2,525,041 - 2,555,671 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	2,497,257 - 2,531,799 (+)	NCBI		T2T-CHM13v2.0

Tbc1d24
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	24,394,405 - 24,424,536 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	24,394,405 - 24,424,536 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	24,175,431 - 24,205,562 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	24,175,431 - 24,205,562 (-)	Ensembl			mm10	GRCm38
MGSCv37	17	24,312,376 - 24,342,507 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	23,906,386 - 23,933,115 (-)	NCBI		MGSCv36	mm8
Celera	17	24,680,659 - 24,710,996 (-)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	12.3	NCBI

Tbc1d24
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	14,812,566 - 14,823,224 (-)	Ensembl
ChiLan1.0	NW_004955442	14,816,213 - 14,823,132 (-)	NCBI	ChiLan1.0	ChiLan1.0

TBC1D24
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	2,976,738 - 3,011,361 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	6,757,748 - 6,788,439 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	1,331,630 - 1,362,320 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	2,581,835 - 2,603,919 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	2,581,835 - 2,603,912 (+)	Ensembl			panPan2	panpan1.1

TBC1D24
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	38,531,547 - 38,557,472 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	39,769,612 - 39,796,058 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	38,840,471 - 38,866,927 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	38,840,528 - 38,866,914 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	38,525,620 - 38,552,059 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	38,498,219 - 38,524,683 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	38,974,367 - 39,000,835 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tbc1d24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	105,145,718 - 105,151,782 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	1,556,244 - 1,569,201 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	1,556,717 - 1,582,019 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TBC1D24
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	39,545,218 - 39,571,277 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	39,545,688 - 39,572,320 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	42,686,824 - 42,691,216 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TBC1D24
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	2,353,543 - 2,378,950 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	28,651,927 - 28,683,478 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tbc1d24
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624824	243,939 - 254,249 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624824	245,717 - 251,603 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tbc1d24
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	1,477,395 - 1,482,669 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tbc1d24
150 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	226
Count of miRNA genes:	163
Interacting mature miRNAs:	183
Transcripts:	ENSRNOT00000009105
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	1	17749933	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_357445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000081995 ⟹ ENSRNOP00000071746

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	13,714,833 - 13,740,473 (-)	Ensembl
mRatBN7.2 Ensembl	10	13,209,895 - 13,235,901 (-)	Ensembl
Rnor_6.0 Ensembl	10	13,551,100 - 13,558,384 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084066 ⟹ ENSRNOP00000073359

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	13,714,833 - 13,724,654 (-)	Ensembl
mRatBN7.2 Ensembl	10	13,209,895 - 13,236,050 (-)	Ensembl
Rnor_6.0 Ensembl	10	13,553,629 - 13,558,377 (-)	Ensembl

RefSeq Acc Id:

NM_001105769 ⟹ NP_001099239

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,714,833 - 13,740,473 (-)	NCBI
mRatBN7.2	10	13,210,275 - 13,235,919 (-)	NCBI
Rnor_6.0	10	13,551,100 - 13,576,739 (-)	NCBI
Rnor_5.0	10	13,367,060 - 13,392,774 (-)	NCBI
RGSC_v3.4	10	13,429,738 - 13,456,667 (-)	RGD
Celera	10	12,896,302 - 12,921,877 (-)	RGD

Sequence:

show sequence

CGCGGTCCAGCGGAGAGCTGAAGGGAGCGGTGCGGTGCGGCGCGCCGAGTCGAATTTTCTAGAT
GCAAGAGAAAGCAGAGCGGTTTGGACATTTACCAAAGCTCACGGAAGCGGACCCCTGTGGCATT
GTTGGACCGCTCTACCATCTGGATCAGAAAGGGTGTGTGGGATGACGGACTGGTTAACAGAAAA
CCCCCGAAGCCGGGGCTGCAGGGTTTAGCTGTTCTTTGTCCCCGCCCTGGCAGCCTGGGACCTG
CCACCTAGGCACACGGGGCACCATGGACTCCCCAGGGTACAATTGCTTTGTGGATAAGGACAAG
ATGGACGCGTCCATCCAGGACCTGGGGCCAAAGGAGCTGAACTACACCGAGCTACAGGAGCTGA
AGCAGCTGGCGCGGCAGGGTTACTGGGCTCAGAGCCACGCCCTGCGGGGGAAAGTGTACCAGCG
TCTGATCCGGGACATCCCCTGCCGCACGGTCACACCCGACGCCAGCGTGTACAGCGACATCGTG
GGGAAGATTGTGGGCAAGCACAGCAGCAGTAGCTTGCCCCTGCCTGAGTTTGTAGACAACACTC
AGGTGCCCACCTACTGCCTGAACCCGCGGGGTGAGGGGGCCGTGCGCAAGATCCTCCTGTGCAT
CGCCAACCAGTTCCCCGACATCTCCTTCTGCCCTGCCCTGCCCGCGGTGGTGGCCTTGCTGCTA
CACTACAGCATTGACGAGGCCGAGTGCTTTGAAAAGGCCTGCCGCATCTTGTCCTGCAACGACC
CCGGCAAGAAGCTCATTGACCAGAGCTTCCTGGCCTTCGAGTCTTCCTGTATGACGTTTGGAGA
CCTGGTGAACAAGTACTGCCAGGCAGCCCACAAACTGATGGTGGCCGTGTCAGAGGACGTTCTG
CAGGTCTACTCTGACTGGCAGAGATGGCTCTTTGGGGAGCTGCCCCTCAACTACTTTGCCCGCG
TTTTCGACGTCTTCCTTGTAGAAGGCTACAAGGTACTGTACCGAGTCGCTCTGGCCATCCTCAA
GTTCTTCCACAAGGTGAGAGCAGGACAGCCCCTTGAGTCAGACAATGTAAAGCAAGACATCCGG
ATGTTTGTCAAGGACATTGCCAAGACAGTGTCCCCTGAGAAACTACTAGAGAAGGCCTTTGCCA
TCCGCCTGTTTTCCCGCAAGGAGATTCAGCTCTTGCAAATGGCCAATGAGAAAGCCCTGAGGCA
GAAGGGTATTACTGTCAAACAGAAGAGGCAGTTTGTACACTTGGCTGTCCATGCAGAGAACTTC
CGCTCAGAGATTGTCAGTGTGAAGGAGATGAGAGACATTTGGTCCTGGATCCCTGAGCGCTTCG
CCCTCTGCCAACCCCTCCTGCTCTTCTCGTCGCTGCAGCATGGGTACAGCCTAAGCAGGTTCTA
TTTCCAGTGCGAAGGACATGAGCCCACACTCCTGCTCATCAAGACCACTCAAAAGGAGGTTTGT
GGGGCTTACCTGTCAACAGACTGGAGTGAGCGGAATAAGTTCGGAGGCAAGCTGAGCTTCTTTG
GGACTGGAGAATGCTTTGTTTTTAGGCTGCAGCCGGAGGTGCAGCGCTATGAGTGGGTGGTCAT
CAAGCACCCAGAACTGACCAAGGCAGCATCCTTCAAGTCCTCAGAGGCTGCAGCCAATCCTTGC
CTCATCAGCCACTCCGTCTCTTCAGACCCTGCCGACCGGCTCTCTCCTTTCCTGGCTGCCCGGC
ACTTCAACCTGCCCTCCAAGACCGAGTCCATGTTCATGGCTGGGGGCAACGACTGCCTCATCAT
TGGGGGAGGAGGTGGCCAAGCACTCTACATCGATGGGGATCTGAACCGAGGGCGCACCGGACAC
TGTGACACGTTCAACAACCAGCCCCTGTGCTCGGAGAGCTTCCTCATCGCGGCCGTGGAGGCTT
GGGGCTTCCAAGACCCCGACACCCAGTGACTGACGGGCCCGCGCTGATGAGCCTGAAGCTCTTG
CTGCACCTCACTGCGAGTCCACACCTGAAGGTGGCCTCCGGAGAGACTTTCTTTGACCAGCTTG
ACCAGTCAGCTCCATTTCCAGAGTTCTTCTCAGAACTGACTAGACTCAGTGAGGCCTTTGCCTC
TTGTCCTTGTGGCCTCTTTGAAGTTCTGTAGTCTTAGTGACTCTTGTGCTTCCTTCCCTGTCAT
GATAGTGACTGAGGCCCACACAGCATGGCATGCTTGTCCCTGTCCAGCTTCCCGCCTTCTCCCC
AGACCCTGCGCTTCTCTGGAACTACTCACACAGCATCTGATACACCCTTGTGCCCCCGTCCCTC
AGCTCTCGCTATGGCTGACCACGTACCATATCTTCTGTGTGCTATCCCTGCTCCCATTATGACC
TCTAGGTCTCTGGATGTCTGTGCTCCCTGAGCCCTGTACCAGCCTGGTACACAGTAGATGCCAA
GAGAGGTGCTGCCTCGAGGTATAGCAAGCTCCACTTCCCCGTGACCTCCCTCAGCTGGTCCTGA
GGGTCCACAGAGGAAGAGAGCAGCAGTGGCCCAAATGGCTGTGCTGGGGCCTAGAAGTCTGGAT
CACAAGGCCAGGTGCCCAGTTCCCACATGACTGTCTGTCACGCCTGAGAGTCAGCCTGTGTCAC
GCCGGTCCTTGTCTCCACTCTGAGAGTCACTTTTGCTGGGGAAGGTTCATCCTTCCCTGTTCCA
TCCATCGGCTCACATCAGCTCTCAGCGGGGCCACAGCAGCAGAAGAGGCAGGGCAGGAAGGAGC
CTCATCTAACTTGTGCTACCTGGTAAACACCTAGAACTTTGGATTCCGCACAGTGGACCAGTTC
CTCCACCATGCTGGCTTCCAGGATGGGTTGGCGTGACTACAGAGGGAAGAGAACTGCTGTTCCT
CACCTCCACAGAATGGTGTAAGCCTCAGCGCCCATCCCCCCTGAGCCCACTGCCCAGGCCTATA
CCTCCAGCTTTGGTGTTTTTTAACACCATCTTGATTTTTGGTTATTGTTGTTTCTGGCAAGACC
TTACTAGGTGGCTTAGCTATCCTGGAACTCCCTATGTGACCCAGGCTAGCCTGCTAATTGCTAT
GTAGCCTAGGTTGGCCTCAAAAATCATGGTCTCCCTTAGCCTCCTAAGTGCTGGGCTTCTAGGT
GTCAGGCCCAGCTTTGCACTTTGCTGTTGCGCTGACTCTGGGTTCTGAGGTGGGCTCCAACCAG
AAGGCCCCCAGGACATTCCCCGGCTGTGCCGTCATGCTGCTCACCCATGCATTACCACGGAGAC
TCACCCTTTCAGAAGCAATGAAGTTAACTAACTAACGGGAGTATGTGCAGGGCTCTGCAGGGCT
CCTGACTGAGTGGAGGATCTCCTGCTCTGTGTGGCCCCACTGGCAGTCTCAGGGGTCTAGCCCT
AGGAGACTGATGGATGCTATGCTTAGTGCTGATTACATCATAAGCAAAGTTCTTAGCTTTTTGC
CCACAACATACTCAGTTCTTTAAATTTAATGTCCTTTATTATTGACTTTTCTACCAAAAGGCGT
ATGGTTTTCTTTATATTTTTATTCTTATCACTGTTCTTATCTGATACTAAGTGTTCTCACTTAG
TATTTATTTTATTAATGTTTTCTATTATTTATTAGCTTTTGATGTTAAAAAAGCAAGCCAAAAC
GTGATGGCATTGAACAAGAAGTTATATTTTAGCAGCATTTAAACATTTGTTTTTAAAACAAATA
CCGAATCTAATTTAAGCCCGCTCACTAAACTAAGTAAGTTTGTTAAGATGTACAATATGCCTTT
GGGGCCTCAGAAAATCAGTTCGAACTTTGGTTTAGTTTGTGAGTTTCATGCAGCTCAGGCTAGC
CTTGAACTAACTGCAGCTGAAGCTGTTCTTGAATTCAGCTTCCTGCTTCCTGCTTCTGTCCTCT
ATGTATTTGGTGTGCCACT

hide sequence

RefSeq Acc Id:

XM_039085349 ⟹ XP_038941277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,711,930 - 13,740,378 (-)	NCBI
mRatBN7.2	10	13,210,562 - 13,235,836 (-)	NCBI

RefSeq Acc Id:

XM_039085350 ⟹ XP_038941278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,711,930 - 13,740,902 (-)	NCBI
mRatBN7.2	10	13,210,562 - 13,236,012 (-)	NCBI

RefSeq Acc Id:

XR_005489713

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,711,930 - 13,740,902 (-)	NCBI
mRatBN7.2	10	13,210,035 - 13,236,013 (-)	NCBI

RefSeq Acc Id:

XR_010055133

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,711,930 - 13,740,902 (-)	NCBI

RefSeq Acc Id:

XR_010055134

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,711,930 - 13,740,902 (-)	NCBI

RefSeq Acc Id:

XR_010055136

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,711,930 - 13,740,902 (-)	NCBI

RefSeq Acc Id:

XR_010055137

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,711,930 - 13,740,902 (-)	NCBI

RefSeq Acc Id:

XR_010055138

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,718,911 - 13,740,902 (-)	NCBI

RefSeq Acc Id:

XR_357445

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	13,711,930 - 13,740,902 (-)	NCBI
mRatBN7.2	10	13,210,562 - 13,236,013 (-)	NCBI
Rnor_6.0	10	13,551,731 - 13,558,287 (-)	NCBI
Rnor_5.0	10	13,367,060 - 13,392,774 (-)	NCBI

Sequence:

show sequence

TGCCACCTAGGCACACGGGGCACCATGGACTCCCCAGGGTACAATTGCTTTGTGGATAAGGACA
AGATGGACGCGTCCATCCAGGACCTGGGGCCAAAGGAGCTGAACTACACCGAGCTACAGGAGCT
GAAGCAGCTGGCGCGGCAGGGTTACTGGGCTCAGAGCCACGCCCTGCGGGGGAAAGTGTACCAG
CGTCTGATCCGGGACATCCCCTGCCGCACGGTCACACCCGACGCCAGCGTGTACAGCGACATCG
TGGGGAAGATTGTGGGCAAGCACAGCAGCAGTAGCTTGCCCCTGCCTGAGTTTGTAGACAACAC
TCAGGTGCCCACCTACTGCCTGAACCCGCGGGGTGAGGGGGCCGTGCGCAAGATCCTCCTGTGC
ATCGCCAACCAGTTCCCCGACATCTCCTTCTGCCCTGCCCTGCCCGCGGTGGTGGCCTTGCTGC
TACACTACAGCATTGACGAGGCCGAGTGCTTTGAAAAGGCCTGCCGCATCTTGTCCTGCAACGA
CCCCGGCAAGAAGCTCATTGACCAGAGCTTCCTGGCCTTCGAGTCTTCCTGTATGACGTTTGGA
GACCTGGTGAACAAGTACTGCCAGGCAGCCCACAAACTGATGGTGGCCGTGTCAGAGGACGTTC
TGCAGGTCTACTCTGACTGGCAGAGATGGCTCTTTGGGGAGCTGCCCCTCAACTACTTTGCCCG
CGTTTTCGACGTCTTCCTTGTAGAAGGCTACAAGGTACTGTACCGAGTCGCTCTGGCCATCCTC
AAGTTCTTCCACAAGGTGAGAGCAGGACAGCCCCTTGAGTCAGACAATGTAAAGCAAGACATCC
GGATGTTTGTCAAGGACATTGCCAAGACAGTGTCCCCTGAGAAACTACTAGAGAAGGCCTTTGC
CATCCGCCTGTTTTCCCGCAAGGAGATTCAGCTCTTGCAAATGGCCAATGAGAAAGCCCTGAGG
CAGAAGGGTATTACTGTCAAACAGAAGAGTGTCTCACTTTCTAAAAGGCAGTTTGTACACTTGG
CTGTCCATGCAGAGAACTTCCGCTCAGAGATTGTCAGTGTGAAGGAGATGAGAGACATTTGGTC
CTGGATCCCTGAGCGCTTCGCCCTCTGCCAACCCCTCCTGCTCTTCTCGTCGCTGCAGCATGGG
TACAGCCTAAGCAGGTTCTATTTCCAGTGCGAAGGACATGAGCCCACACTCCTGCTCATCAAGA
CCACTCAAAAGGAGGTTTGTGGGGCTTACCTGTCAACAGACTGGAGTGAGCGGAATAAGTTCGG
AGGCAAGCTGAGCTTCTTTGGGACTGGAGAATGCTTTGTTTTTAGGCTGCAGCCGGAGGTGCAG
CGCTATGAGTGGGTGGTCATCAAGCACCCAGAACTGACCAAGGCAGCATCCTTCAAGTCCTCAG
AGGCTGCAGCCAATCCTTGCCTCATCAGCCACTCCGTCTCTTCAGACCCTGCCGACCGGCTCTC
TCCTTTCCTGGCTGCCCGGCACTTCAACCTGCCCTCCAAGACCGAGTCCATGTTCATGGCTGGG
GGCAACGACTGCCTCATCATTGGGGGAGGAGGTGGCCAAGCACTCTACATCGATGGGGATCTGA
ACCGAGGGCGCACCGGACACTGTGACACGTTCAACAACCAGCCCCTGTGCTCGGAGAGCTTCCT
CATCGCGGCCGTGGAGGCTTGGGGCTTCCAAGACCCCGACACCCAGTGACTGACGGGCCCGCGC
TGATGGTGACTGAGCCACGTTGTGGGGTGATGGGGCGGAGGCCCAGCTGCCTCTTCAGGGAGCA
GGGAAGCCTGAAGCTCTTGCTGCACCTCACTGCGAGTCCACACCTGAAGGTGGCCTCCGGAGAG
ACTTTCTTTGACCAGCTTGACCAGTCAGCTCCATTTCCAGAGTTCTTCTCAGAACTGACTAGAC
TCAGTGAGGCCTTTGCCTCTTGTCCTTGTGGCCTCTTTGAAGTTCTGTAGTCTTAGTGACTCTT
GTGCTTCCTTCCCTGTCATGATAGTGACTGAGGCCCACACAGCATGGCATGCTTGTCCCTGTCC
AGCTTCCCGCCTTCTCCCCAGACCCTGCGCTTCTCTGGAACTACTCACACAGCATCTGATACAC
CCTTGTGCCCCCGTCCCTCAGCTCTCGCTATGGCTGACCACGTACCATATCTTCTGTGTGCTAT
CCCTGCTCCCATTATGACCTCTAGGTCTCTGGATGTCTGTGCTCCCTGAGCCCTGTACCAGCCT
GGTACACAGTAGATGCCAAGAGAGGTGCTGCCTCGAGGTATAGCAAGCTCCACTTCCCCGTGAC
CTCCCTCAGCTGGTCCTGAGGGTCCACAGAGGAAGAGAGCAGCAGTGGCCCAAATGGCTGTGCT
GGGGCCTAGAAGTCTGGATCACAAGGCCAGGTGCCCAGTTCCCACATGACTGTCTGTCACGCCT
GAGAGTCAGCCTGTGTCACGCCGGTCCTTGTCTCCACTCTGAGAGTCACTTTTGCTGGGGAAGG
TTCATCCTTCCCTGTTCCATCCATCGGCTCACATCAGCTCTCAGCGGGGCCACAGCAGCAGAAG
AGGCAGGGCAGGAAGGAGCCTCATCTAACTTGTGCTACCTGGTAAACACCTAGAACTTTGGATT
CCGCACAGTGGACCAGTTCCTCCACCATGCTGGCTTCCAGGATGGGTTGGCGTGACTACAGAGG
GAAGAGAACTGCTGTTCCTCACCTCCACAGAATGGTGTAAGCCTCAGCGCCCATCCCCCCTGAG
CCCACTGCCCAGGCCTATACCTCCAGCTTTGGTGTTTTTTAACACCATCTTGATTTTTGGTTAT
TGTTGTTTCTGGCAAGACCTTACTAGGTGGCTTAGCTATCCTGGAACTCCCTATGTGACCCAGG
CTAGCCTGCTAATTGCTATGTAGCCTAGGTTGGCCTCAAAAATCATGGTCTCCCTTAGCCTCCT
AAGTGCTGGGCTTCTAGGTGTCAGGCCCAGCTTTGCACTTTGCTGTTGCGCTGACTCTGGGTTC
TGAGGTGGGCTCCAACCAGAAGGCCCCCAGGACATTCCCCGGCTGTGCCGTCATGCTGCTCACC
CATGCATTACCACGGAGACTCACCCTTTCAGAAGCAATGAAGTTAAC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099239	(Get FASTA)	NCBI Sequence Viewer
	XP_038941277	(Get FASTA)	NCBI Sequence Viewer
	XP_038941278	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM03813	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071746
	ENSRNOP00000071746.1
	ENSRNOP00000073359
	ENSRNOP00000073359.1

RefSeq Acc Id:

NP_001099239 ⟸ NM_001105769

- UniProtKB:

D4A3Z3 (UniProtKB/TrEMBL), A6HCQ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDSPGYNCFVDKDKMDASIQDLGPKELNYTELQELKQLARQGYWAQSHALRGKVYQRLIRDIPC
RTVTPDASVYSDIVGKIVGKHSSSSLPLPEFVDNTQVPTYCLNPRGEGAVRKILLCIANQFPDI
SFCPALPAVVALLLHYSIDEAECFEKACRILSCNDPGKKLIDQSFLAFESSCMTFGDLVNKYCQ
AAHKLMVAVSEDVLQVYSDWQRWLFGELPLNYFARVFDVFLVEGYKVLYRVALAILKFFHKVRA
GQPLESDNVKQDIRMFVKDIAKTVSPEKLLEKAFAIRLFSRKEIQLLQMANEKALRQKGITVKQ
KRQFVHLAVHAENFRSEIVSVKEMRDIWSWIPERFALCQPLLLFSSLQHGYSLSRFYFQCEGHE
PTLLLIKTTQKEVCGAYLSTDWSERNKFGGKLSFFGTGECFVFRLQPEVQRYEWVVIKHPELTK
AASFKSSEAAANPCLISHSVSSDPADRLSPFLAARHFNLPSKTESMFMAGGNDCLIIGGGGGQA
LYIDGDLNRGRTGHCDTFNNQPLCSESFLIAAVEAWGFQDPDTQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000071746 ⟸ ENSRNOT00000081995

Ensembl Acc Id:

ENSRNOP00000073359 ⟸ ENSRNOT00000084066

RefSeq Acc Id:	XP_038941278 ⟸ XM_039085350
- Peptide Label:	isoform X2
- UniProtKB:	D4A3Z3 (UniProtKB/TrEMBL), A6HCQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941277 ⟸ XM_039085349
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K5B0 (UniProtKB/TrEMBL)

Protein Domains

TLDc

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K5B0-F1-model_v2	AlphaFold	A0A0G2K5B0	1-562	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306143	AgrOrtholog
BioCyc Gene	G2FUF-25872	BioCyc
Ensembl Genes	ENSRNOG00000052204	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000081995	ENTREZGENE
	ENSRNOT00000081995.3	UniProtKB/TrEMBL
	ENSRNOT00000084066	ENTREZGENE
	ENSRNOT00000084066.3	UniProtKB/TrEMBL
Gene3D-CATH	Ypt/Rab-GAP domain of gyp1p, domain 3	UniProtKB/TrEMBL
InterPro	Rab-GTPase_TBC_sf	UniProtKB/TrEMBL
	RabGAP_TBC	UniProtKB/TrEMBL
	TLDc	UniProtKB/TrEMBL
KEGG Report	rno:287110	UniProtKB/TrEMBL
NCBI Gene	287110	ENTREZGENE
PANTHER	GTPASE-ACTIVATING PROTEIN SKYWALKER	UniProtKB/TrEMBL
	NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED	UniProtKB/TrEMBL
Pfam	TBC	UniProtKB/TrEMBL
	TLD	UniProtKB/TrEMBL
PhenoGen	Tbc1d24	PhenoGen
PROSITE	TLDC	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000052204	RatGTEx
SMART	TBC	UniProtKB/TrEMBL
	TLDc	UniProtKB/TrEMBL
Superfamily-SCOP	RabGAP_TBC	UniProtKB/TrEMBL
UniProt	A0A0G2K5B0	ENTREZGENE, UniProtKB/TrEMBL
	A6HCQ8	ENTREZGENE, UniProtKB/TrEMBL
	D4A3Z3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Tbc1d24	TBC1 domain family, member 24	RGD1306143_predicted	similar to CG9339-PA (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1306143_predicted	similar to CG9339-PA (predicted)	LOC287110_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC287110_predicted	similar to CG9339-PA (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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