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Gene: Caprin1 (cell cycle associated protein 1) Rattus norvegicus

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Symbol:

Caprin1

Name:

cell cycle associated protein 1

RGD ID:

1305707

Description:

Enables RNA binding activity. Involved in negative regulation of translation. Located in P-body and cytoplasmic stress granule. Is active in glutamatergic synapse and postsynapse. Orthologous to human CAPRIN1 (cell cycle associated protein 1); INTERACTS WITH 2,4-dibromophenyl 2,4,5-tribromophenyl ether; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

caprin-1; cytoplasmic activation- and proliferation-associated protein 1; glycosyl-phosphatidyl-inositol-anchored protein p137-like; GPI p137; GPI-anchored membrane protein 1; GPI-anchored protein p137; GPI-p137; Gpiap1; LOC362173; MGC124904; MGC125054; p137GPI; RNA granule protein 105; rng105

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CAPRIN1 (cell cycle associated protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Caprin1 (cell cycle associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Caprin1 (cell cycle associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CAPRIN1 (cell cycle associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CAPRIN1 (cell cycle associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Caprin1 (cell cycle associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CAPRIN1 (cell cycle associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CAPRIN1 (cell cycle associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Caprin1 (cell cycle associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Caprin1 (cell cycle associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CHN1 (chimerin 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CAPRIN1 (cell cycle associated protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Caprin1 (cell cycle associated protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	caprin1a (cell cycle associated protein 1a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	caprin1a (cell cycle associated protein 1a)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	caprin1b (cell cycle associated protein 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Capr	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Capr	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	caprin1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	caprin1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Related Pseudogenes:

Caprin1-ps1

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	110,606,489 - 110,685,408 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	110,606,489 - 110,685,562 (-)	Ensembl				GRCr8
mRatBN7.2	3	90,152,305 - 90,230,447 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	90,153,620 - 90,230,502 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	93,647,702 - 93,679,513 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	102,246,781 - 102,278,592 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	100,078,070 - 100,109,864 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	93,701,830 - 93,789,580 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	93,702,487 - 93,789,617 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	100,342,429 - 100,430,355 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	89,062,097 - 89,093,093 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	89,222,579 - 89,254,302 (-)	NCBI		Celera
RGSC_v3.1	3	88,958,538 - 88,988,864 (-)	NCBI
Cytogenetic Map	3	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

cerebellar ataxia (ISO)

focal epilepsy (ISO)

juvenile myoclonic epilepsy (ISO)

NEURODEGENERATION, CHILDHOOD-ONSET, WITH CEREBELLAR ATAXIA AND COGNITIVE DECLINE (ISO)

NEURODEVELOPMENTAL DISORDER WITH LANGUAGE IMPAIRMENT, AUTISM, AND ATTENTION DEFICIT-HYPERACTIVITY DISORDER (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

14-Deoxy-11,12-didehydroandrographolide (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (EXP)

2,4-dinitrotoluene (EXP)

2,6-di-tert-butyl-4-methylphenol (ISO)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

2-bromohexadecanoic acid (ISO)

2-methoxyethanol (EXP)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amiodarone (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

belinostat (ISO)

benzatropine (ISO)

benzbromarone (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

ciguatoxin CTX1B (ISO)

clofibrate (EXP)

cobalt dichloride (ISO)

Cuprizon (ISO)

D-glucitol (ISO)

dibenz[a,h]anthracene (ISO)

diethylstilbestrol (ISO)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

emetine (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenvalerate (EXP)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

furfural (ISO)

glafenine (EXP)

GW 4064 (ISO)

inulin (ISO)

ivermectin (ISO)

L-ethionine (EXP)

methapyrilene (EXP)

methylmercury chloride (ISO)

nefazodone (EXP)

nickel atom (ISO)

nitrates (ISO)

Nivalenol (ISO)

omeprazole (EXP)

oxaliplatin (EXP)

ozone (ISO)

paclitaxel (ISO)

paracetamol (ISO)

parathion (ISO)

PCB138 (EXP)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

PhIP (EXP)

pirinixic acid (EXP,ISO)

potassium dichromate (ISO)

resveratrol (ISO)

rotenone (EXP)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

tamibarotene (ISO)

tamoxifen (ISO)

temozolomide (ISO)

theophylline (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

generation of neurons (ISO)

intracellular mRNA localization (ISO)

membraneless organelle assembly (IEA,ISO)

negative regulation of translation (IDA,IEA,ISO)

nervous system development (ISO)

positive regulation of dendrite morphogenesis (IEA,ISO,ISS)

positive regulation of dendritic spine morphogenesis (IEA,ISO,ISS)

positive regulation of stress granule assembly (IEA,ISO,ISS)

regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA (IEA,ISO,ISS)

synapse assembly (ISO)

synapse organization (ISO)

Cellular Component

cell leading edge (IEA,ISO,ISS)

cytoplasm (IBA,IEA,ISO)

cytoplasmic ribonucleoprotein granule (IEA)

cytoplasmic stress granule (IDA,IEA,ISO)

cytosol (IEA,ISO)

dendrite (IEA,ISO)

glutamatergic synapse (IDA)

lamellipodium (IEA)

P-body (IDA)

postsynapse (IDA)

synapse (IEA,ISO)

Molecular Function

ATP binding (IEA,ISO,ISS)

molecular condensate scaffold activity (IEA,ISO,ISS)

molecular function activator activity (IEA,ISO)

mRNA binding (IEA,ISO)

nucleotide binding (IEA)

protein binding (ISO)

RNA binding (IBA,IDA,IEA)

signaling adaptor activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	RNA granule protein 140 (RNG140), a paralog of RNG105 localized to distinct RNA granules in neuronal dendrites in the adult vertebrate brain.	Shiina N and Tokunaga M, J Biol Chem. 2010 Jul 30;285(31):24260-9. doi: 10.1074/jbc.M110.108944. Epub 2010 Jun 1.
5.	A novel RNA-binding protein in neuronal RNA granules: regulatory machinery for local translation.	Shiina N, etal., J Neurosci. 2005 Apr 27;25(17):4420-34. doi: 10.1523/JNEUROSCI.0382-05.2005.

Additional References at PubMed

PMID:12477932	PMID:16452087	PMID:19946888	PMID:21933836	PMID:22658674	PMID:22681889	PMID:22871113	PMID:28131823	PMID:28733330	PMID:32360748	PMID:35352799

Genomics

Comparative Map Data

Caprin1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	110,606,489 - 110,685,408 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	110,606,489 - 110,685,562 (-)	Ensembl				GRCr8
mRatBN7.2	3	90,152,305 - 90,230,447 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	90,153,620 - 90,230,502 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	93,647,702 - 93,679,513 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	102,246,781 - 102,278,592 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	100,078,070 - 100,109,864 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	93,701,830 - 93,789,580 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	93,702,487 - 93,789,617 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	100,342,429 - 100,430,355 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	89,062,097 - 89,093,093 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	89,222,579 - 89,254,302 (-)	NCBI		Celera
RGSC_v3.1	3	88,958,538 - 88,988,864 (-)	NCBI
Cytogenetic Map	3	q32	NCBI

CAPRIN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	34,051,731 - 34,102,610 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	34,051,674 - 34,102,610 (+)	Ensembl			hg38	GRCh38
GRCh37	11	34,073,278 - 34,124,157 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	34,029,806 - 34,080,733 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	34,029,751 - 34,076,481	NCBI
Celera	11	34,220,789 - 34,271,699 (+)	NCBI		Celera
Cytogenetic Map	11	p13	NCBI
HuRef	11	33,769,782 - 33,820,808 (+)	NCBI		HuRef
CHM1_1	11	34,072,620 - 34,123,525 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	34,188,759 - 34,239,614 (+)	NCBI		T2T-CHM13v2.0

Caprin1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	103,593,292 - 103,627,946 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	103,593,286 - 103,627,994 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	103,762,945 - 103,797,669 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	103,762,941 - 103,797,649 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	103,603,102 - 103,637,797 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	103,565,858 - 103,598,436 (-)	NCBI		MGSCv36	mm8
Celera	2	105,012,217 - 105,048,383 (-)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	54.43	NCBI

Caprin1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	12,126,893 - 12,165,949 (-)	Ensembl
ChiLan1.0	NW_004955422	12,126,893 - 12,170,877 (-)	NCBI	ChiLan1.0	ChiLan1.0

CAPRIN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	36,271,239 - 36,325,424 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	36,276,001 - 36,330,232 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	34,023,981 - 34,079,335 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	33,903,543 - 33,957,294 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	33,902,072 - 33,957,134 (+)	Ensembl			panPan2	panpan1.1

CAPRIN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	33,695,371 - 33,733,688 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	33,695,371 - 33,733,688 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	33,301,246 - 33,339,556 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	34,306,683 - 34,344,820 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	34,306,683 - 34,344,820 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	33,865,625 - 33,903,949 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	33,458,234 - 33,496,560 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	34,093,795 - 34,132,098 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Caprin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	30,788,580 - 30,828,751 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	3,913,375 - 3,952,851 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	3,913,375 - 3,953,551 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CAPRIN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	26,830,267 - 26,875,357 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	26,830,987 - 26,875,425 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	29,199,142 - 29,242,779 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CAPRIN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	31,173,846 - 31,224,118 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	31,172,785 - 31,223,370 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	128,274,802 - 128,323,587 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Caprin1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	13,012,149 - 13,048,808 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624767	13,010,512 - 13,049,507 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Caprin1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	81,595,899 - 81,627,574 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Caprin1
608 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	247
Count of miRNA genes:	176
Interacting mature miRNAs:	202
Transcripts:	ENSRNOT00000012428
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	74364268	119364268	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	101255536	134750886	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

RH142945

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	44,276,968 - 44,277,203 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	46,574,418 - 46,574,652	NCBI	Rnor6.0
Rnor_5.0	11	49,756,714 - 49,756,948	UniSTS	Rnor5.0
RGSC_v3.4	11	45,224,000 - 45,224,234	UniSTS	RGSC3.4
Celera	11	44,040,584 - 44,040,818	UniSTS
RH 3.4 Map	11	331.2	UniSTS
Cytogenetic Map	11	q12	UniSTS
Cytogenetic Map	3	q32	UniSTS

RH128979

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	46,753,583 - 46,753,799 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	90,153,870 - 90,154,082 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	48,364,124 - 48,364,339	NCBI	Rnor6.0
Rnor_6.0	3	93,702,094 - 93,702,305	NCBI	Rnor6.0
Rnor_5.0	10	48,155,005 - 48,155,220	UniSTS	Rnor5.0
Rnor_5.0	3	100,342,691 - 100,342,902	UniSTS	Rnor5.0
RGSC_v3.4	10	48,232,561 - 48,232,776	UniSTS	RGSC3.4
Celera	10	45,999,946 - 46,000,161	UniSTS
Celera	3	89,222,186 - 89,222,397	UniSTS
RH 3.4 Map	3	721.8	UniSTS
Cytogenetic Map	3	q32	UniSTS
Cytogenetic Map	10	q23	UniSTS

RH133345

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	90,155,792 - 90,156,011 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	93,704,016 - 93,704,234	NCBI	Rnor6.0
Rnor_5.0	3	100,344,613 - 100,344,831	UniSTS	Rnor5.0
Celera	3	89,224,108 - 89,224,326	UniSTS
RH 3.4 Map	3	719.32	UniSTS
Cytogenetic Map	3	q32	UniSTS

RH138024

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	110,616,394 - 110,616,732 (+)	Marker Load Pipeline
RH 3.4 Map	3	720.71	UniSTS
Cytogenetic Map	3	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001423164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB373991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY155572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB579393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR459061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012428 ⟹ ENSRNOP00000012428

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	110,606,489 - 110,681,467 (-)	Ensembl
mRatBN7.2 Ensembl	3	90,153,620 - 90,230,502 (-)	Ensembl
Rnor_6.0 Ensembl	3	93,702,487 - 93,734,282 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078616 ⟹ ENSRNOP00000074604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	93,703,367 - 93,789,617 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000143989 ⟹ ENSRNOP00000102792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	110,606,489 - 110,641,058 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000155375 ⟹ ENSRNOP00000107099

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	110,606,489 - 110,685,562 (-)	Ensembl

RefSeq Acc Id:

NM_001012185 ⟹ NP_001012185

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	110,606,489 - 110,641,058 (-)	NCBI
mRatBN7.2	3	90,154,264 - 90,186,067 (-)	NCBI
Rnor_6.0	3	93,702,487 - 93,734,282 (-)	NCBI
Rnor_5.0	3	100,342,429 - 100,430,355 (-)	NCBI
RGSC_v3.4	3	89,062,097 - 89,093,093 (-)	RGD
Celera	3	89,222,579 - 89,254,302 (-)	RGD

Sequence:

show sequence

GCGCACGTCTCTGTTCGCAACGCAGCGCTACCCTTGCCCCCCTCGGCTGCCCACTCCAGACGTC
CAACGGCTCAGCGCGCGCACGATGCCCTCGGCCACCAGCCACAGCGGAAGCGGCAGCAAATCGT
CGGGACCGCCGCCGCCGTCCGGTTCCTCCGGGAGTGAGGCGGCGGCCGGGGCAGCTGCGCCGGC
TTCTCAGCATCCGGCAACCGGCACCGGCGCGGTCCAGACCGAGGCCATGAAGCAGATTCTCGGC
GTGATCGACAAGAAACTTCGGAACCTTGAGAAGAAAAAGGGTAAACTTGATGATTACCAGGAAC
GAATGAATAAAGGGGAAAGGCTCAATCAAGACCAGCTGGATGCCGTATCTAAGTACCAGGAAGT
CACAAATAATTTGGAGTTTGCAAAGGAATTACAGAGAAGTTTCATGGCATTAAGTCAGGATATT
CAGAAAACAATAAAGAAGACAGCACGTCGGGAGCAGCTTATGAGAGAAGAAGCAGAACAGAAGC
GCTTAAAAACTGTACTTGAGTTACAGTATGTATTGGATAAGCTGGGAGATGATGATGTGAGAAC
GGATCTGAAGCAGGGGCTGAGTGGAGTGCCAATATTGTCTGAAGAGGAGTTGTCATTGTTGGAT
GAATTCTACAAGCTAGTAGATCCCGAGCGGGACATGAGTTTAAGGTTAAATGAGCAGTATGAAC
ATGCCTCCATTCACTTGTGGGATTTGCTGGAAGGGAAAGAAAAGCCTGTATGTGGAACAACCTA
TAAAGCTCTAAAGGAAATTGTCGAGCGTGTTTTTCAGTCAAACTACTTTGACAGCACTCATAAT
CATCAAAATGGATTGTGTGAGGAGGAAGAGGCAGCTTCAGCACCTATAGTGGAAGACCAGGTAG
CTGAAGCTGAACCTGAACCAACGGAAGAATACACAGAGCAAAGTGAGGTTGAGTCAACAGAGTA
TGTCAATAGGCAGTTCATGGCGGAAACACAGTTCAGCAGTGGTGAGAAGGAGCAAGTGGATGAG
TGGGCAGTTGAAACAGTTGAGGTGGTAAACTCACTCCAGCAGCAACCTCAGGCTGCATCTCCTT
CAGTACCAGAGCCCCACTCTCTGACTCCAGTGGCTCAGTCAGATCCACTTGTGAGAAGACAGCG
AGTACAAGATCTTATGGCACAAATGCAAGGGCCCTATAATTTCATACAGGATTCAATGTTGGAT
TTTGAAAATCAGACGCTTGATCCTGCCATTGTATCAGCACAACCTATGAACCCTACCCAAAACA
TGGATATGCCTCAGCTGGTTTGCCCTCAGGTTCATTCTGAATCTAGACTTGCCCAATCTAATCA
AGTTCCTGTACAACCAGAAGCCACACAGGTTCCTTTGGTCTCATCCACAAGCGAGGGGTACACT
GCGTCTCAGCCCCTGTACCAGCCGTCTCATGCTGCAGAGCAGCGGCCACAAAAGGAGCCCATTG
ATCAGATTCAGGCAACAATATCTTTAAATACAGAGCAGACTACAGCATCATCATCCCTTCCTGC
TGCTTCTCAGCCTCAAGTGTTCCAGGCTGGGGCAAGTAAACCTTTGCATAGCAGTGGAATCAAT
GTAAATGCAGCTCCATTCCAATCCATGCAAACGGTGTTTAATATGAATGCCCCAGTTCCTCCTG
TTAATGAACCAGAAACTTTAAAACAACAGAGTCAGTACCAGGCCAGTTATAACCAGAGCTTTTC
CAGTCAGCCTCACCAAGTGGAACAAACAGAGCTTCAACAAGACCAGCTGCAAACTGTGGTTGGC
ACTTACCATGGATCCCAGGACCAGCCTCATCAAGTGCCTGGTAACCACCAGCAGCCCCCCCAGC
AGAGCACCGGCTTTCCACGTAGCAGTCAGCCTTATTACAACAGTCGCGGTGTATCTCGAGGAGG
GTCTCGTGGTGCCAGAGGTTTGATGAATGGATACAGGGGCCCTGCCAATGGATTTAGAGGAGGA
TATGATGGTTACCGCTCTTCATTCTCCAACACTCCAAACAGTGGCTATACACAGTCTCAGTTCA
ATGCTCCCCGGGACTACTCTGGCTACCAGCGGGATGGATATCAGCAGAATTTCAAGCGAGGCTC
TGGGCAGAGTGGACCACGGGGAGCCCCACGAGGTCGTGGAGGGCCCCCAAGACCCAACAGAGGG
ATGCCGCAAATGAACACTCAGCAAGTGAATTAATGTGATACACAGGATTATGTTTAATCGCCAA
AAACACACTGGCCAGTGTACCATAATATGTTACCAGAAGAGTTATTATCTATTTGTTCTCCCTT
TCAGGAAACTTATTGTAAAGGGACTGTTTTCATCCCATAAAGACAGGACTGCAATTGTCAGCTT
CATATTACCTGGAAATGGAAGGAACTATTCTTACTCTGCATGTTCTGTCCTAAGCGTCATCTTG
AGCCTTGCACACGAAACTCAGATTCCTCACCCTTGCTTAGGAGTAAAACATTATATACTTATGG
GGTGATAATATCTCCATAGTTAGTTGAAGTGGCTTGGAAAAAAATGCAAGATTGACTTTTGACA
TTGGATAAAATTTACAATCAGCCCTAGAATTATTCAATGGTAATTGACAAAGTTTAAAGCATTT
TCCTTGAAAGGAAGATGGAAGGAGTGGAGTGTGGTTTAGCAAAACAACTGCATTTCACAGCTTT
TCCCATTAAATTGGAGCACGGACAGATTAGAAGCATACCAAATTATGCATGGGTTCTAATCACA
CAAGTGAGGCTGGCTTACACCAGCCCTGACATAGCACTCACTAGTCTTCTGGCCAAACGACTGT
GATTGAAAACACATGTAAACTGCTCTTTACTAGTGGATACTGTGTAAGACAAAGCCCAGATGCA
AATCAGGCTTTGACTGACTCTTCTGGAAGATATGCATCAAATATGGGGTATAATCTGGATGGGC
TGCCTCTGTGCTCAATGTGAATTATTTAGATATCTTTTGAACACTTTAACAGTTTCTCTGAAAC
AATGACTTACATGAGGATTGGTCCTCACAATAATGTGCATTGTCATCACTAACCCTGGATCTTG
CTGTATTGTTACTCAAATTGGTAATAGGTACTGATGAAGATCGCTAATGGATGGATAATCATAA
CACTTTTGGCCACATGGTTTTCTGCTGCTACCACCCTTTTGAAAAGCACCAGTATGTGTTTAAG
ATTCATTTCCCTATTTTAGGGAAATGACAGACAGTAGTTTCAGTTCTGATGGTATAAGCAAAAC
AAATAAAACATGTTTCTAAAAGTTAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001423164 ⟹ NP_001410093

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	110,606,489 - 110,640,483 (-)	NCBI

RefSeq Acc Id:

XM_006234652 ⟹ XP_006234714

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	110,608,549 - 110,632,159 (-)	NCBI
mRatBN7.2	3	90,153,825 - 90,230,447 (-)	NCBI
Rnor_6.0	3	93,701,830 - 93,789,580 (-)	NCBI
Rnor_5.0	3	100,342,429 - 100,430,355 (-)	NCBI

Sequence:

show sequence

CAGTGCCCAGCGATGCCAGGATAACAGCAGAATTGATTTCTGAAAACACCAAAGTTAATGGTAG
TGAAATTTTCACAGCTGAGTTTCATGGCACATGGTGACTTAACTTTCATAGGTATGGATCAGCA
ATTCTAGATGAATCTCAGAGTCACTGAAGGATATCCCTTCATTGTGGAGCAGTTGAAAACTTAA
ACCTTAAGATTAGCGGTTGTCCTTGTCATCTCCCTGTCATTACATGAGCAGCAATGGAGAACGA
GGCCAGAATGCATGCTGCAATACGGACGGGCAGACTAATGCTACACGAACAGGCCTTCAGCATT
TGAAGAGAACTGTTACAGATCTTCTGAGTTGGTAAACTTGATGATTACCAGGAACGAATGAATA
AAGGGGAAAGGCTCAATCAAGACCAGCTGGATGCCGTATCTAAGTACCAGGAAGTCACAAATAA
TTTGGAGTTTGCAAAGGAATTACAGAGAAGTTTCATGGCATTAAGTCAGGATATTCAGAAAACA
ATAAAGAAGACAGCACGTCGGGAGCAGCTTATGAGAGAAGAAGCAGAACAGAAGCGCTTAAAAA
CTGTACTTGAGTTACAGTATGTATTGGATAAGCTGGGAGATGATGATGTGAGAACGGATCTGAA
GCAGGGGCTGAGTGGAGTGCCAATATTGTCTGAAGAGGAGTTGTCATTGTTGGATGAATTCTAC
AAGCTAGTAGATCCCGAGCGGGACATGAGTTTAAGGTTAAATGAGCAGTATGAACATGCCTCCA
TTCACTTGTGGGATTTGCTGGAAGGGAAAGAAAAGCCTGTATGTGGAACAACCTATAAAGCTCT
AAAGGAAATTGTCGAGCGTGTTTTTCAGTCAAACTACTTTGACAGCACTCATAATCATCAAAAT
GGATTGTGTGAGGAGGAAGAGGCAGCTTCAGCACCTATAGTGGAAGACCAGGTAGCTGAAGCTG
AACCTGAACCAACGGAAGAATACACAGAGCAAAGTGAGGTTGAGTCAACAGAGTATGTCAATAG
GCAGTTCATGGCGGAAACACAGTTCAGCAGTGGTGAGAAGGAGCAAGTGGATGAGTGGGCAGTT
GAAACAGTTGAGGTGGTAAACTCACTCCAGCAGCAACCTCAGGCTGCATCTCCTTCAGTACCAG
AGCCCCACTCTCTGACTCCAGTGGCTCAGTCAGATCCACTTGTGAGAAGACAGCGAGTACAAGA
TCTTATGGCACAAATGCAAGGGCCCTATAATTTCATACAGGATTCAATGTTGGATTTTGAAAAT
CAGACGCTTGATCCTGCCATTGTATCAGCACAACCTATGAACCCTACCCAAAACATGGATATGC
CTCAGCTGGTTTGCCCTCAGGTTCATTCTGAATCTAGACTTGCCCAATCTAATCAAGTTCCTGT
ACAACCAGAAGCCACACAGGTTCCTTTGGTCTCATCCACAAGCGAGGGGTACACTGCGTCTCAG
CCCCTGTACCAGCCGTCTCATGCTGCAGAGCAGCGGCCACAAAAGGAGCCCATTGATCAGATTC
AGGCAACAATATCTTTAAATACAGAGCAGACTACAGCATCATCATCCCTTCCTGCTGCTTCTCA
GCCTCAAGTGTTCCAGGCTGGGGCAAGTAAACCTTTGCATAGCAGTGGAATCAATGTAAATGCA
GCTCCATTCCAATCCATGCAAACGGTGTTTAATATGAATGCCCCAGTTCCTCCTGTTAATGAAC
CAGAAACTTTAAAACAACAGAGTCAGTACCAGGCCAGTTATAACCAGAGCTTTTCCAGTCAGCC
TCACCAAGTGGAACAAACAGAGCTTCAACAAGACCAGCTGCAAACTGTGGTTGGCACTTACCAT
GGATCCCAGGACCAGCCTCATCAAGTGCCTGGTAACCACCAGCAGCCCCCCCAGCAGAGCACCG
GCTTTCCACGTAGCAGTCAGCCTTATTACAACAGTCGCGGTGTATCTCGAGGAGGGTCTCGTGG
TGCCAGAGGTTTGATGAATGGATACAGGGGCCCTGCCAATGGATTTAGAGGAGGATATGATGGT
TACCGCTCTTCATTCTCCAACACTCCAAACAGTGGCTATACACAGTCTCAGTTCAATGCTCCCC
GGGACTACTCTGGCTACCAGCGGGATGGATATCAGCAGAATTTCAAGCGAGGCTCTGGGCAGAG
TGGACCACGGGGAGCCCCACGAGGTCGTGGAGGGCCCCCAAGACCCAACAGAGGGATGCCGCAA
ATGAACACTCAGCAAGTGAATTAATGTGATACACAGGATTATGTTTAATCGCCAAAAACACACT
GGCCAGTGTACCATAATATGTTACCAGAAGAGTTATTATCTATTTGTTCTCCCTTTCAGGAAAC
TTATTGTAAAGGGACTGTTTTCATCCCATAAAGACAGGACTGCAATTGTCAGCTTCATATTACC
TGGAAATGGAAGGAACTATTCTTACTCTGCATGTTCTGTCCTAAGCGTCATCTTGAGCCTTGCA
CACGAAACTCAGATTCCTCACCCTTGCTTAGGAGTAAAACATTATATACTTATGGGGTGATAAT
ATCTCCATAGTTAGTTGAAGTGGCTTGGAAAAAAATGCAAGATTGACTTTTGACATTGGATAAA
ATTTACAATCAGCCCTAGAATTATTCAATGGTAATTGACAAAGTTTAAAGCATTTTCCTTGAAA
GGAAGATGGAAGGAGTGGAGTGTGGTTTAGCAAAACAACTGCATTTCACAGCTTTTCCCATTAA
ATTGGAGCACGGACAGATTAGAAGCATACCAAATTATGCATGGGTTCTAATCACACAAGTGAGG
CTGGCTTACACCAGCCCTGACATAGCACTCACTAGTCTTCTGGCCAAACGACTGTGATTGAAAA
CACATGTAAACTGCTCTTTACTAGTGGATACTGTGTAAGACAAAGCCCAGATGCAAATCAGGCT
TTGACTGACTCTTCTGGAAGATATGCATCAAATATGGGGTATAATCTGGATGGGCTGCCTCTGT
GCTCAATGTGAATTATTTAGATATCTTTTGAACACTTTAACAGTTTCTCTGAAACAATGACTTA
CATGAGGATTGGTCCTCACAATAATGTGCATTGTCATCACTAACCCTGGATCTTGCTGTATTGT
TACTCAAATTGGTAATAGGTACTGATGAAGATCGCTAATGGATGGATAATCATAACACTTTTGG
CCACATGGTTTTCTGCTGCTACCACCCTTTTGAAAAGCACCAGTATGTGTTTAAGATTCATTTC
CCTATTTTAGGGAAATGACAGACAGTAGTTTCAGTTCTGATGGTATAAGCAAAACAAATAAAAC
ATGTTTCTAAAAGTTGTATCTTGAAACACTGGTGTTCAACAGCTAGCAGCTAAAGTGATTCACA
CCATGCATTGTTAGTGTCACAGACTTTGTGGTTATGTCTAATAGCTGTTTCTGAAGTATTTTCG
TTTATCTTTTGTCTAATTTAACCCTAAGTGAATTCTCTCCTTTTTCTTGAGGACACACTTATGC
TCAAAGTGTTGACTCTGCCGTAGGTGCATAAAGAGAGTGTACCGTTTGACAGAGATGCAAAGTT
CAGCAGTGACCTAACCAGATGTCCTGTGCTGGGATCTGTGCTAGCAGTTTGAGCACGAGCTGTG
TGCCTGTGAACTGAATGCCACTTGTCCCACTCCATCTACGCCTTGCAGAATCAGTTCCACTTGT
TAAAGGCAAAGGCTACTTACCACCTTAATGCTATTTTCTGTAAAGAAATTAAATTTTACTTTTA
GCCTTTTGCAAACTTTTTTTTTCCAAGCCGGTAATCAGCCACTCAAAACAACTATTCTCAGATA
TTCATCATTAGACAACTGGAGTTTTTTGCTGGTTTTGTAGCCTACTAAAACTGCTTAGGCTGTT
GAACATTCCACATTCAAAGTTTTGTAGGGTGGTGGATAATGGGGAAACTTCAATGTTTATTTTA
AAATAAATAAAATAAGTTCTTGACTTTTCTCA

hide sequence

RefSeq Acc Id:

XM_039105438 ⟹ XP_038961366

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	110,608,549 - 110,685,408 (-)	NCBI
mRatBN7.2	3	90,152,305 - 90,226,324 (-)	NCBI

RefSeq Acc Id:

XM_063284152 ⟹ XP_063140222

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	110,608,549 - 110,685,408 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012185	(Get FASTA)	NCBI Sequence Viewer
	NP_001410093	(Get FASTA)	NCBI Sequence Viewer
	XP_006234714	(Get FASTA)	NCBI Sequence Viewer
	XP_038961366	(Get FASTA)	NCBI Sequence Viewer
	XP_063140222	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87123	(Get FASTA)	NCBI Sequence Viewer
	AAO21306	(Get FASTA)	NCBI Sequence Viewer
	BAF98181	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012428
	ENSRNOP00000102792
GenBank Protein	Q5M9G3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012185 ⟸ NM_001012185

- UniProtKB:

A9ZSZ9 (UniProtKB/Swiss-Prot), Q6YF16 (UniProtKB/Swiss-Prot), Q5M9G3 (UniProtKB/Swiss-Prot), A6HNS6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPSATSHSGSGSKSSGPPPPSGSSGSEAAAGAAAPASQHPATGTGAVQTEAMKQILGVIDKKLR
NLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKT
ARREQLMREEAEQKRLKTVLELQYVLDKLGDDDVRTDLKQGLSGVPILSEEELSLLDEFYKLVD
PERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCE
EEEAASAPIVEDQVAEAEPEPTEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWAVETVE
VVNSLQQQPQAASPSVPEPHSLTPVAQSDPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLD
PAIVSAQPMNPTQNMDMPQLVCPQVHSESRLAQSNQVPVQPEATQVPLVSSTSEGYTASQPLYQ
PSHAAEQRPQKEPIDQIQATISLNTEQTTASSSLPAASQPQVFQAGASKPLHSSGINVNAAPFQ
SMQTVFNMNAPVPPVNEPETLKQQSQYQASYNQSFSSQPHQVEQTELQQDQLQTVVGTYHGSQD
QPHQVPGNHQQPPQQSTGFPRSSQPYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRSS
FSNTPNSGYTQSQFNAPRDYSGYQRDGYQQNFKRGSGQSGPRGAPRGRGGPPRPNRGMPQMNTQ
QVN

hide sequence

RefSeq Acc Id:	XP_006234714 ⟸ XM_006234652
- Peptide Label:	isoform X2
- UniProtKB:	A6HNS6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKR LKTVLELQYVLDKLGDDDVRTDLKQGLSGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEH ASIHLWDLLEGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPIVEDQVA EAEPEPTEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWAVETVEVVNSLQQQPQAASPS VPEPHSLTPVAQSDPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNM DMPQLVCPQVHSESRLAQSNQVPVQPEATQVPLVSSTSEGYTASQPLYQPSHAAEQRPQKEPID QIQATISLNTEQTTASSSLPAASQPQVFQAGASKPLHSSGINVNAAPFQSMQTVFNMNAPVPPV NEPETLKQQSQYQASYNQSFSSQPHQVEQTELQQDQLQTVVGTYHGSQDQPHQVPGNHQQPPQQ STGFPRSSQPYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRSSFSNTPNSGYTQSQFN APRDYSGYQRDGYQQNFKRGSGQSGPRGAPRGRGGPPRPNRGMPQMNTQQVN hide sequence

Ensembl Acc Id:

ENSRNOP00000012428 ⟸ ENSRNOT00000012428

Ensembl Acc Id:

ENSRNOP00000074604 ⟸ ENSRNOT00000078616

RefSeq Acc Id:	XP_038961366 ⟸ XM_039105438
- Peptide Label:	isoform X1
- UniProtKB:	A6HNS6 (UniProtKB/TrEMBL), A0A8L2Q6N7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001410093 ⟸ NM_001423164
- UniProtKB:	Q6YF16 (UniProtKB/Swiss-Prot), Q5M9G3 (UniProtKB/Swiss-Prot), A9ZSZ9 (UniProtKB/Swiss-Prot), A6HNS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140222 ⟸ XM_063284152
- Peptide Label:	isoform X1
- UniProtKB:	A6HNS6 (UniProtKB/TrEMBL), A0A8L2Q6N7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000107099 ⟸ ENSRNOT00000155375

Ensembl Acc Id:

ENSRNOP00000102792 ⟸ ENSRNOT00000143989

Protein Domains

Caprin-1 dimerization Cytoplasmic activation/proliferation-associated

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5M9G3-F1-model_v2	AlphaFold	Q5M9G3	1-707	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692255

Promoter ID:

EPDNEW_R2780

Type:

initiation region

Name:

Caprin1_1

Description:

cell cycle associated protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	93,734,336 - 93,734,396	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305707	AgrOrtholog
BioCyc Gene	G2FUF-48567	BioCyc
Ensembl Genes	ENSRNOG00000009152	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000012428	ENTREZGENE
	ENSRNOT00000143989	ENTREZGENE
IMAGE_CLONE	IMAGE:7108524	IMAGE-MGC_LOAD
InterPro	Caprin	UniProtKB/Swiss-Prot
	Caprin-1_C	UniProtKB/Swiss-Prot
	Caprin-1_dimer	UniProtKB/Swiss-Prot
KEGG Report	rno:362173	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94820	IMAGE-MGC_LOAD
NCBI Gene	362173	ENTREZGENE
PANTHER	CAPRIN-1	UniProtKB/Swiss-Prot
	PTHR22922	UniProtKB/Swiss-Prot
Pfam	Caprin-1_C	UniProtKB/Swiss-Prot
	Caprin-1_dimer	UniProtKB/Swiss-Prot
PhenoGen	Caprin1	PhenoGen
RatGTEx	ENSRNOG00000009152	RatGTEx
UniProt	A0A8L2Q6N7	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LSU5_RAT	UniProtKB/TrEMBL
	A6HNS6	ENTREZGENE, UniProtKB/TrEMBL
	A9ZSZ9	ENTREZGENE
	CAPR1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q6YF16	ENTREZGENE
UniProt Secondary	A9ZSZ9	UniProtKB/Swiss-Prot
	Q6YF16	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Caprin1	cell cycle associated protein 1	Gpiap1	GPI-anchored membrane protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Gpiap1	GPI-anchored membrane protein 1	Gpiap1_predicted	GPI-anchored membrane protein 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Gpiap1_predicted	GPI-anchored membrane protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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