Fam161a (FAM161 centrosomal protein A) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Fam161a (FAM161 centrosomal protein A) Rattus norvegicus
Analyze
Symbol: Fam161a
Name: FAM161 centrosomal protein A
RGD ID: 1304999
Description: Predicted to enable identical protein binding activity and microtubule binding activity. Predicted to be involved in cilium assembly. Located in ciliary basal body and photoreceptor connecting cilium. Human ortholog(s) of this gene implicated in retinitis pigmentosa 28. Orthologous to human FAM161A (FAM161 centrosomal protein A); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FAM161A, centrosomal protein; family with sequence similarity 161, member A; hypothetical protein LOC289833; LOC289833; RGD1304999; similar to 4930430E16Rik protein
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,210,694 - 101,256,020 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl14101,210,662 - 101,229,535 (+)EnsemblGRCr8
mRatBN7.21497,009,449 - 97,027,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1497,009,491 - 97,028,588 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx14101,342,733 - 101,355,866 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014102,585,032 - 102,598,165 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01499,056,635 - 99,069,774 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014107,785,029 - 107,803,765 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14107,785,029 - 107,798,115 (+)Ensemblrn6Rnor6.0
Rnor_5.014107,860,984 - 107,874,833 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.414103,692,758 - 103,705,775 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1495,990,742 - 96,004,101 (+)NCBICelera
RGSC_v3.114103,711,968 - 103,724,985 (+)NCBI
Cytogenetic Map14q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. FAM161A, associated with retinitis pigmentosa, is a component of the cilia-basal body complex and interacts with proteins involved in ciliopathies. Di Gioia SA, etal., Hum Mol Genet. 2012 Dec 1;21(23):5174-84. doi: 10.1093/hmg/dds368. Epub 2012 Sep 1.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:21399614   PMID:22791751   PMID:24833722   PMID:25416956  


Genomics

Comparative Map Data
Fam161a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,210,694 - 101,256,020 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl14101,210,662 - 101,229,535 (+)EnsemblGRCr8
mRatBN7.21497,009,449 - 97,027,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1497,009,491 - 97,028,588 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx14101,342,733 - 101,355,866 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014102,585,032 - 102,598,165 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01499,056,635 - 99,069,774 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014107,785,029 - 107,803,765 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14107,785,029 - 107,798,115 (+)Ensemblrn6Rnor6.0
Rnor_5.014107,860,984 - 107,874,833 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.414103,692,758 - 103,705,775 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1495,990,742 - 96,004,101 (+)NCBICelera
RGSC_v3.114103,711,968 - 103,724,985 (+)NCBI
Cytogenetic Map14q22NCBI
FAM161A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38261,800,240 - 61,854,060 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl261,824,848 - 61,854,143 (-)Ensemblhg38GRCh38
GRCh37262,051,983 - 62,081,195 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36261,907,022 - 61,934,554 (-)NCBIBuild 36Build 36hg18NCBI36
Celera261,897,120 - 61,926,189 (-)NCBICelera
Cytogenetic Map2p15NCBI
HuRef261,792,029 - 61,821,234 (-)NCBIHuRef
CHM1_1261,982,106 - 62,011,236 (-)NCBICHM1_1
T2T-CHM13v2.0261,806,309 - 61,860,167 (-)NCBIT2T-CHM13v2.0
Fam161a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391122,956,725 - 22,995,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1122,957,531 - 22,980,788 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381123,006,721 - 23,045,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1123,007,531 - 23,030,788 (+)Ensemblmm10GRCm38
MGSCv371122,913,387 - 22,923,741 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361122,913,387 - 22,923,731 (+)NCBIMGSCv36mm8
Celera1125,149,017 - 25,159,371 (+)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.25NCBI
FAM161A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21264,529,561 - 64,558,991 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A64,533,464 - 64,562,935 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A61,907,508 - 61,936,530 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A63,041,759 - 63,070,172 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A63,041,759 - 63,070,172 (-)EnsemblpanPan2panpan1.1
FAM161A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11061,774,879 - 61,839,853 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1061,814,693 - 61,839,777 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1061,664,679 - 61,729,584 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01062,783,420 - 62,848,547 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1062,823,210 - 62,848,532 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11062,467,773 - 62,532,684 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01062,771,529 - 62,836,464 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01063,066,672 - 63,131,867 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam161a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629221,349,790 - 21,368,415 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364917,212,194 - 7,221,618 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364917,202,877 - 7,221,493 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM161A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl379,952,844 - 79,978,587 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1379,952,698 - 79,978,584 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2383,788,352 - 83,814,333 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM161A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11445,121,524 - 45,152,947 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1445,122,899 - 45,152,463 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604566,682,550 - 66,712,534 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam161a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462483383,038 - 99,909 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462483383,089 - 107,979 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fam161a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11193,871,571 - 93,877,524 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fam161a
623 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:94
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000013097
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat

Markers in Region
AW532997  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21497,022,380 - 97,022,575 (+)MAPPERmRatBN7.2
Rnor_6.014107,797,918 - 107,798,112NCBIRnor6.0
Rnor_5.014107,874,615 - 107,874,809UniSTSRnor5.0
RGSC_v3.414103,723,124 - 103,723,318UniSTSRGSC3.4
RGSC_v3.414103,705,577 - 103,705,771UniSTSRGSC3.4
Celera1496,003,903 - 96,004,097UniSTS
RH 3.4 Map14772.7UniSTS
Cytogenetic Map14q22UniSTS
RH142897  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr814101,223,848 - 101,224,052 (+)Marker Load Pipeline
mRatBN7.21497,022,646 - 97,022,850 (+)MAPPERmRatBN7.2
Rnor_6.014107,798,184 - 107,798,387NCBIRnor6.0
Rnor_5.014107,874,881 - 107,875,084UniSTSRnor5.0
RGSC_v3.414103,705,843 - 103,706,046UniSTSRGSC3.4
Celera1496,004,169 - 96,004,372UniSTS
RH 3.4 Map14747.9UniSTS
Cytogenetic Map14q22UniSTS
RH134972  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21497,012,258 - 97,012,464 (+)MAPPERmRatBN7.2
Rnor_6.014107,787,797 - 107,788,002NCBIRnor6.0
RGSC_v3.414103,695,420 - 103,695,661UniSTSRGSC3.4
Celera1495,993,514 - 95,993,719UniSTS
RH 3.4 Map14767.3UniSTS
Cytogenetic Map14q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 11 65 162 66 65 35 55 35 6 275 152 11 141 66 92 30 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC109547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR470815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV115343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000013097   ⟹   ENSRNOP00000013097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14101,210,662 - 101,223,789 (+)Ensembl
mRatBN7.2 Ensembl1497,009,491 - 97,022,578 (+)Ensembl
Rnor_6.0 Ensembl14107,785,029 - 107,798,115 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087091   ⟹   ENSRNOP00000070570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14101,210,662 - 101,228,304 (+)Ensembl
mRatBN7.2 Ensembl1497,009,491 - 97,028,588 (+)Ensembl
Rnor_6.0 Ensembl14107,785,135 - 107,798,115 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119794   ⟹   ENSRNOP00000078780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14101,210,720 - 101,229,535 (+)Ensembl
mRatBN7.2 Ensembl1497,009,491 - 97,028,588 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000128400   ⟹   ENSRNOP00000102948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl14101,210,696 - 101,229,535 (+)Ensembl
RefSeq Acc Id: NM_001013876   ⟹   NP_001013898
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,210,694 - 101,223,781 (+)NCBI
mRatBN7.21497,009,491 - 97,022,579 (+)NCBI
Rnor_6.014107,785,029 - 107,798,116 (+)NCBI
Rnor_5.014107,860,984 - 107,874,833 (+)NCBI
RGSC_v3.414103,692,758 - 103,705,775 (+)RGD
Celera1495,990,742 - 96,004,101 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599131   ⟹   XP_017454620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,210,736 - 101,256,020 (+)NCBI
mRatBN7.21497,009,575 - 97,027,857 (+)NCBI
Rnor_6.014107,785,174 - 107,803,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599132   ⟹   XP_017454621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,210,736 - 101,229,547 (+)NCBI
mRatBN7.21497,009,480 - 97,027,856 (+)NCBI
Rnor_6.014107,785,029 - 107,803,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599135   ⟹   XP_017454624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,210,743 - 101,229,547 (+)NCBI
mRatBN7.21497,009,449 - 97,027,857 (+)NCBI
Rnor_6.014107,785,201 - 107,803,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599138   ⟹   XP_017454627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,210,736 - 101,229,547 (+)NCBI
mRatBN7.21497,009,575 - 97,027,855 (+)NCBI
Rnor_6.014107,785,174 - 107,803,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091768   ⟹   XP_038947696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,210,736 - 101,229,547 (+)NCBI
mRatBN7.21497,009,575 - 97,027,865 (+)NCBI
RefSeq Acc Id: XM_063272986   ⟹   XP_063129056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,210,736 - 101,229,547 (+)NCBI
RefSeq Acc Id: XM_063272987   ⟹   XP_063129057
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814101,210,736 - 101,223,785 (+)NCBI
RefSeq Acc Id: NP_001013898   ⟸   NM_001013876
- UniProtKB: A6JQ64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454621   ⟸   XM_017599132
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZLY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454620   ⟸   XM_017599131
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017454627   ⟸   XM_017599138
- Peptide Label: isoform X4
- UniProtKB: A6JQ64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454624   ⟸   XM_017599135
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000070570   ⟸   ENSRNOT00000087091
Ensembl Acc Id: ENSRNOP00000013097   ⟸   ENSRNOT00000013097
RefSeq Acc Id: XP_038947696   ⟸   XM_039091768
- Peptide Label: isoform X7
Ensembl Acc Id: ENSRNOP00000078780   ⟸   ENSRNOT00000119794
RefSeq Acc Id: XP_063129056   ⟸   XM_063272986
- Peptide Label: isoform X5
- UniProtKB: A0A8L2R4E5 (UniProtKB/TrEMBL),   A6JQ64 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129057   ⟸   XM_063272987
- Peptide Label: isoform X6
- UniProtKB: A0A0A0MXW0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000102948   ⟸   ENSRNOT00000128400

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AY14-F1-model_v2 AlphaFold Q6AY14 1-422 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699520
Promoter ID:EPDNEW_R10044
Type:initiation region
Name:Fam161a_1
Description:family with sequence similarity 161, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.014107,785,013 - 107,785,073EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304999 AgrOrtholog
BioCyc Gene G2FUF-14787 BioCyc
Ensembl Genes ENSRNOG00000009881 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000087091 ENTREZGENE
  ENSRNOT00000119794 ENTREZGENE
  ENSRNOT00000128400 ENTREZGENE
IMAGE_CLONE IMAGE:7132584 IMAGE-MGC_LOAD
InterPro FAM161 UniProtKB/Swiss-Prot
  UPF0564 UniProtKB/Swiss-Prot
KEGG Report rno:289833 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94314 IMAGE-MGC_LOAD
NCBI Gene 289833 ENTREZGENE
PANTHER PROTEIN FAM161A UniProtKB/Swiss-Prot
  UNCHARACTERIZED UniProtKB/Swiss-Prot
Pfam UPF0564 UniProtKB/Swiss-Prot
PhenoGen Fam161a PhenoGen
RatGTEx ENSRNOG00000009881 RatGTEx
UniProt A0A0A0MXW0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZLY1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R4E5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LE73_RAT UniProtKB/TrEMBL
  A6JQ64 ENTREZGENE, UniProtKB/TrEMBL
  F161A_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Fam161a  FAM161 centrosomal protein A  Fam161a  FAM161A, centrosomal protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2018-04-30 Fam161a  FAM161A, centrosomal protein  Fam161a  family with sequence similarity 161, member A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Fam161a  family with sequence similarity 161, member A  RGD1304999  similar to 4930430E16Rik protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1304999  similar to 4930430E16Rik protein  RGD1304999_predicted  similar to 4930430E16Rik protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1304999_predicted  similar to 4930430E16Rik protein (predicted)  LOC289833_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC289833_predicted  similar to 4930430E16Rik protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL