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Gene: Rcsd1 (RCSD domain containing 1) Rattus norvegicus

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Symbol:

Rcsd1

Name:

RCSD domain containing 1

RGD ID:

1304715

Description:

Predicted to enable actin filament binding activity; phosphatidylinositol phosphate binding activity; and retromer complex binding activity. Predicted to be involved in several processes, including cellular hyperosmotic response; protein localization to endosome; and retrograde transport, endosome to Golgi. Predicted to be part of WASH complex. Predicted to be active in early endosome. Orthologous to human RCSD1 (RCSD domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

capZ-interacting protein; LOC360872; RGD1304715; similar to Hypothetical protein MGC32399

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RCSD1 (RCSD domain containing 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Rcsd1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rcsd1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RCSD1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RCSD1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rcsd1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RCSD1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RCSD1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rcsd1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rcsd1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CD84 (CD84 molecule)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RCSD1 (RCSD domain containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RCSD1 (RCSD domain containing 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rcsd1 (RCSD domain containing 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dub (duboraya)	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dub (duboraya)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:153184	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector)
Danio rerio (zebrafish):	zgc:153184	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	rcsd1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rcsd1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	80,434,878 - 80,497,312 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	80,434,878 - 80,498,931 (-)	Ensembl				GRCr8
mRatBN7.2	13	77,901,898 - 77,964,309 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	77,901,898 - 77,966,228 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	80,520,129 - 80,582,534 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	81,824,121 - 81,886,529 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	79,071,128 - 79,133,577 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	83,854,650 - 83,917,040 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	83,854,664 - 83,917,021 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	88,734,809 - 88,797,190 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	81,370,795 - 81,387,656 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	77,614,795 - 77,676,707 (-)	NCBI		Celera
RGSC_v3.1	13	81,384,961 - 81,401,846 (-)	NCBI
Cytogenetic Map	13	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

actinomycin D (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

gentamycin (EXP)

leflunomide (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

nitrates (ISO)

nitrofen (EXP)

Nutlin-3 (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

topotecan (EXP)

triclosan (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular hyperosmotic response (IEA,ISO)

protein localization to endosome (IBA)

retrograde transport, endosome to Golgi (IBA)

skeletal muscle contraction (IEP)

Cellular Component

cytosol (IEA)

early endosome (IBA)

WASH complex (IBA)

Molecular Function

actin filament binding (IBA,IEA,ISO)

phosphatidylinositol phosphate binding (IBA)

retromer complex binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	The phosphorylation of CapZ-interacting protein (CapZIP) by stress-activated protein kinases triggers its dissociation from CapZ.	Eyers CE, etal., Biochem J. 2005 Jul 1;389(Pt 1):127-35.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Rcsd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	80,434,878 - 80,497,312 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	80,434,878 - 80,498,931 (-)	Ensembl				GRCr8
mRatBN7.2	13	77,901,898 - 77,964,309 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	77,901,898 - 77,966,228 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	80,520,129 - 80,582,534 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	81,824,121 - 81,886,529 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	79,071,128 - 79,133,577 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	83,854,650 - 83,917,040 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	83,854,664 - 83,917,021 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	88,734,809 - 88,797,190 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	81,370,795 - 81,387,656 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	77,614,795 - 77,676,707 (-)	NCBI		Celera
RGSC_v3.1	13	81,384,961 - 81,401,846 (-)	NCBI
Cytogenetic Map	13	q23	NCBI

RCSD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	167,630,232 - 167,708,696 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	167,629,660 - 167,708,706 (+)	Ensembl			hg38	GRCh38
GRCh37	1	167,599,469 - 167,677,933 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	165,865,954 - 165,942,110 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	140,708,754 - 140,784,746 (+)	NCBI		Celera
Cytogenetic Map	1	q24.2	NCBI
HuRef	1	138,845,527 - 138,921,574 (+)	NCBI		HuRef
CHM1_1	1	169,021,745 - 169,097,714 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	166,981,734 - 167,060,191 (+)	NCBI		T2T-CHM13v2.0

Rcsd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	165,476,503 - 165,537,632 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	165,474,085 - 165,537,326 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	165,648,945 - 165,710,063 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	165,646,516 - 165,709,757 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	167,579,076 - 167,638,225 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	167,485,620 - 167,544,769 (-)	NCBI		MGSCv36	mm8
Celera	1	168,093,649 - 168,153,153 (-)	NCBI		Celera
Cytogenetic Map	1	H2.3	NCBI
cM Map	1	72.99	NCBI

Rcsd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955462	9,318,218 - 9,384,637 (-)	Ensembl
ChiLan1.0	NW_004955462	9,321,624 - 9,383,962 (-)	NCBI	ChiLan1.0	ChiLan1.0

RCSD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	82,057,694 - 82,133,640 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	81,726,228 - 81,802,214 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	143,062,602 - 143,138,987 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	146,895,246 - 146,921,977 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	146,899,485 - 146,921,977 (+)	Ensembl			panPan2	panpan1.1

RCSD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	30,756,524 - 30,852,309 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	30,756,645 - 30,852,818 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	30,291,890 - 30,363,980 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	30,573,456 - 30,645,719 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	30,574,560 - 30,670,802 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	30,413,478 - 30,485,522 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	30,444,773 - 30,541,796 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	30,683,174 - 30,780,128 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rcsd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	100,548,850 - 100,600,630 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	18,395,281 - 18,447,386 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	18,395,577 - 18,447,323 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RCSD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	83,324,187 - 83,404,102 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	83,322,175 - 83,404,102 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	90,999,951 - 91,088,740 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RCSD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	61,325,591 - 61,401,287 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	61,327,144 - 61,400,754 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	63,049,339 - 63,125,421 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rcsd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624826	5,729,704 - 5,744,327 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624826	5,673,114 - 5,745,948 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rcsd1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	44,754,886 - 44,814,927 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rcsd1
176 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	300
Count of miRNA genes:	185
Interacting mature miRNAs:	219
Transcripts:	ENSRNOT00000004387
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

D13Got63

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	77,960,345 - 77,960,556 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	83,913,038 - 83,913,248	NCBI	Rnor6.0
Rnor_5.0	13	88,793,204 - 88,793,414	UniSTS	Rnor5.0
Celera	13	77,672,744 - 77,672,954	UniSTS
RH 3.4 Map	13	480.1	UniSTS
RH 3.4 Map	13	480.1	RGD
RH 2.0 Map	13	580.0	RGD
Cytogenetic Map	13	q23	UniSTS

RH128967

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	77,901,923 - 77,902,117 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	83,854,690 - 83,854,883	NCBI	Rnor6.0
Rnor_5.0	13	88,734,856 - 88,735,049	UniSTS	Rnor5.0
RGSC_v3.4	13	81,370,821 - 81,371,014	UniSTS	RGSC3.4
Celera	13	77,614,821 - 77,615,014	UniSTS
Cytogenetic Map	13	q23	UniSTS

RH142931

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	77,902,961 - 77,903,109 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	83,855,728 - 83,855,875	NCBI	Rnor6.0
Rnor_5.0	13	88,735,894 - 88,736,041	UniSTS	Rnor5.0
RGSC_v3.4	13	81,371,859 - 81,372,006	UniSTS	RGSC3.4
Celera	13	77,615,859 - 77,616,006	UniSTS
Cytogenetic Map	13	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004387 ⟹ ENSRNOP00000004387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	80,434,878 - 80,481,646 (-)	Ensembl
mRatBN7.2 Ensembl	13	77,901,898 - 77,966,228 (-)	Ensembl
Rnor_6.0 Ensembl	13	83,854,664 - 83,917,001 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082422 ⟹ ENSRNOP00000074219

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	80,441,730 - 80,451,742 (-)	Ensembl
mRatBN7.2 Ensembl	13	77,908,750 - 77,918,891 (-)	Ensembl
Rnor_6.0 Ensembl	13	83,855,444 - 83,917,021 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112592 ⟹ ENSRNOP00000084185

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	80,434,878 - 80,451,739 (-)	Ensembl
mRatBN7.2 Ensembl	13	77,901,898 - 77,965,294 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113367 ⟹ ENSRNOP00000077388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	80,434,878 - 80,498,931 (-)	Ensembl
mRatBN7.2 Ensembl	13	77,901,898 - 77,966,228 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132206 ⟹ ENSRNOP00000111451

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	80,434,878 - 80,497,276 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166515 ⟹ ENSRNOP00000106470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	80,434,878 - 80,497,283 (-)	Ensembl

RefSeq Acc Id:

NM_001108349 ⟹ NP_001101819

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	80,434,878 - 80,497,283 (-)	NCBI
mRatBN7.2	13	77,901,898 - 77,964,309 (-)	NCBI
Rnor_6.0	13	83,854,664 - 83,917,001 (-)	NCBI
Rnor_5.0	13	88,734,809 - 88,797,190 (-)	NCBI
RGSC_v3.4	13	81,370,795 - 81,387,656 (-)	RGD
Celera	13	77,614,795 - 77,676,707 (-)	RGD

Sequence:

show sequence

CTGGGGCAGTCCCGCAGCCGAGTGCAGCCAGGCGCGCGCCACCGCCCACTCGCCCTGTGGCCGC
TACAGCCCAAAAGTACCCCGGGCTGGGAGCTGAGGGGACAGCGGGGATCCTGAGCTCTTAACCC
GAGCGAGCGGGCGTGTCCGCAGCCGGAGGACTACCTGGAGGACATGGAGGAAAGACCCTCGGAG
ACCAACTCCAATGTTGACAGCTCAGCGCAGCCTTCAGTGGCCCAGCTGGCTGGGCGGTTTCGGG
AGCAGGCAGCTGTGGCCAGGGAGAAATCACCATCCAGCACCAGCCACCCACCTAAAATCAAGGT
GAAGAGCTCACCTCTGATTGAGAAGCTCCAGGCCAATTTAGCCTTTGATCCGGCAGCTCTTCTG
CCTGGGGCTTCACCCAAAAGTCCCGGACTCAAGGCCATGGTGTCGCCATTTCACAGTCCCCCTT
CCACACCCAGTAGCCCTGGCATCCGATCCCACCCAGGTGAGGCAGAAGAGGTGCCTGTGAGCTT
TGACCAGCCTCCGGAAGGTACTCACCTGCCCTCTTACAATAAGGTAAGGACTAGAGGCTCAATA
AAAAGACGTCCTCCCTCGAGGCGATTCCGAAGGTCTCAGTCGGACTGTGGGGACCTCAGAGATT
ACAGAGCTGTGGAACCATCTCAGGAAAACGGTGCCAGGGAAGAAAATGGGGATGACGTGTTTCC
TAGCAAGAGCAAGGACCCCGGGTCCCCCCAACCCAACCAGGAAGCCGGGGCAGATAGGGTAGAA
GGAACCCTGAGGTCTACAGAAAAGCCACGGAGGAGGAACACGTGCAGCAGCACAGAGAAGCCAG
AGGAGCTGGTCGGGACCCTAGAGGAGGCGAATGCCGGAGCGAAGGCTGGACAGACTCCAGACAC
AGCCAGTCAGGGTCATCCAGAGGTTCAGGAGCCATCACAAACCTGCAGCCCAGAGACTGAGAAT
GGGTGTGGAAGCCCACGGGAAGAGACAGCCCCTGGAGAGCACACAGACACTGGGAAGGCCACAG
AAGGGACAGCCTCTGAGGAAAGGGTAACAGAGGAAGAGGATGGGCTTGGACAGAAAAGCCCAGA
TGCAAATATACCCGAGGACGAAGTGGTCAGGGGGAAGGTCCCCCAAACTTCTTCTGGAGAAGCG
GAAGGTACCACTGTCCCAGAGCCGGAAGCAAAGCAAAAGGAGGAGGCGCCTCTGGAGCCAAGCG
GCAGCCCAGGGGCCGACCATTCGGCAGGAGAGGCCAGCAATGAGATCCAGAGTGAGAATGCAGT
CTCCACGGAAGACATCCCCGTGGAGGATACCCGAATGTGATGAAGAGCTCAGGGTACCAGTGAT
GGGGCCACTGGAGACGTCTCCTTGGAAACAGCAGCAGCAGTAGCAGCAGTAGCAGTTGATGGAG
CAGGGGAACACACTGAGCACCCGGAGGCAGCCCAGAATGCAGGGCGGATTGTCTCCCGTAGGCT
CCACCAAGCCTTGTCAGAGACCAGAGCTGAGGACAGTAGAGTTTTGTCAACCTGAGTCTGCGCC
ATCCGATGCACCGACTCAGAGTTAAATATATTTAAAGCAGTTTGCTGTGGCGTCTACTCCACAG
CAATCCTGGCCTTCCTGTTGCCCCCCTCCCCCAGGCCTTCCTGCAGCCGACCTCCCAACTAGGC
TCTTGTTGAACTTGTGTAAAGTTACAGTCTTTTTCTATTGTTCTAACGTTTTTATGGTTCTCAG
ATGTAACTTAAGAAAAAAAACAAACTAATTTTAGGTAGATAAAGAAGACAGTCTTGTGGAGAAT
AAAATCCTCTGAGTTCCAGAGACCTGAAAAGGTATCAAAGTCCTCACTATGATCTTTCTGTTTG
CTCCACATGGGGAACAGCTGACCAGTTTCCAAAAACAAAGCAAGATATTTATTAAAACATGTAA
AAATTTTGTTCCTGTCTGTTCCAAGGGCAGGCGCTTTCCCTGTCCCACAGCCGGGATGATGAGA
ACAAGGGAAGTGATTGGTCCATCCCATCCCATGCTGCCCTGTTACAGGAACTCCCTCAGAGAGG
CAGGGTATGACATTGTGGCTTTGTGCTTCATTTCCCCCCTGAAGGTGCAACAGTATCTGCCTCC
TCCAAGCACTGGTTGCACTCTCCTACAAGGTTACACTTGAACAGGAAACTGGCTAACCTCTGGG
ACAGGTGCTGAGTGTCCACAGCGCAACTTACCTTCTGAGAGCATCCTCCCTCGTAGCTTCTCTA
TGAAGCGTTTGTTTGTTTGATCTTGATTTTTTTTTTTTAATCTCACCATGTAGCCTTCAACTTA
CTATGAAGCCCAGGCTGGTTTTGAACTAGTGAGCCCCCTGCCTCTGCCTCTGGATTGTAGGTAC
GCATCATCGTGCCTGGCTCTCAGTAAGCATTTCTCAAATCCAAGTCCAAGTTCTTCTCCCAGAC
TCAGGAGGCATGAGTTGGGGCCGTCAGCCCGTTTTCATCAGGAAGTCCTGCTTAGTATCCTGTC
TGGGGACAAAACAGGGTTTGTAGGGATGGGGGTCAGTCTGATATCCATCTCCCCATGCACTCCT
GCTGAAGAATTGTTAACCTAAATAAATGTTGAATCTTC

hide sequence

RefSeq Acc Id:

NM_001415737 ⟹ NP_001402666

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	80,434,878 - 80,497,276 (-)	NCBI
mRatBN7.2	13	77,901,898 - 77,964,302 (-)	NCBI

RefSeq Acc Id:

XM_008769663 ⟹ XP_008767885

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	80,434,878 - 80,497,312 (-)	NCBI
mRatBN7.2	13	77,901,898 - 77,960,052 (-)	NCBI
Rnor_6.0	13	83,854,650 - 83,870,263 (-)	NCBI

Sequence:

show sequence

CCCCGATTTTGCACTTTTGTTTTCTCAATTAAAAATAAAATTGACCCACGGTCTCTAGAGAGGA
ATGCTCTAAAGGACAAAGGAGATGGTCTAGTTCTGCCTCTCGCCAGAAAGGCAAAGATGTGGAT
GTCGTCTTGCAAGACACCAGCCAGTAAGCCAACAAGAAGGAAACCACCCTGCTCCCTCCCCCTC
TTCCCCCCCAAGGTAGAGCTGGGCCAGAATGGTGAGGAGAAATCACCATCCAGCACCAGCCACC
CACCTAAAATCAAGGTGAAGAGCTCACCTCTGATTGAGAAGCTCCAGGCCAATTTAGCCTTTGA
TCCGGCAGCTCTTCTGCCTGGGGCTTCACCCAAAAGTCCCGGACTCAAGGCCATGGTGTCGCCA
TTTCACAGTCCCCCTTCCACACCCAGTAGCCCTGGCATCCGATCCCACCCAGGTGAGGCAGAAG
AGGTGCCTGTGAGCTTTGACCAGCCTCCGGAAGGTACTCACCTGCCCTCTTACAATAAGGTAAG
GACTAGAGGCTCAATAAAAAGACGTCCTCCCTCGAGGCGATTCCGAAGGTCTCAGTCGGACTGT
GGGGACCTCAGAGATTACAGAGCTGTGGAACCATCTCAGGAAAACGGTGCCAGGGAAGAAAATG
GGGATGACGTGTTTCCTAGCAAGAGCAAGGACCCCGGGTCCCCCCAACCCAACCAGGAAGCCGG
GGCAGATAGGGTAGAAGGAACCCTGAGGTCTACAGAAAAGCCACGGAGGAGGAACACGTGCAGC
AGCACAGAGAAGCCAGAGGAGCTGGTCGGGACCCTAGAGGAGGCGAATGCCGGAGCGAAGGCTG
GACAGACTCCAGACACAGCCAGTCAGGGTCATCCAGAGGTTCAGGAGCCATCACAAACCTGCAG
CCCAGAGACTGAGAATGGGTGTGGAAGCCCACGGGAAGAGACAGCCCCTGGAGAGCACACAGAC
ACTGGGAAGGCCACAGAAGGGACAGCCTCTGAGGAAAGGGTAACAGAGGAAGAGGATGGGCTTG
GACAGAAAAGCCCAGATGCAAATATACCCGAGGACGAAGTGGTCAGGGGGAAGGTCCCCCAAAC
TTCTTCTGGAGAAGCGGAAGGTACCACTGTCCCAGAGCCGGAAGCAAAGCAAAAGGAGGAGGCG
CCTCTGGAGCCAAGCGGCAGCCCAGGGGCCGACCATTCGGCAGGAGAGGCCAGCAATGAGATCC
AGAGTGAGAATGCAGTCTCCACGGAAGACATCCCCGTGGAGGATACCCGAATGTGATGAAGAGC
TCAGGGTACCAGTGATGGGGCCACTGGAGACGTCTCCTTGGAAACAGCAGCAGCAGTAGCAGCA
GTAGCAGTTGATGGAGCAGGGGAACACACTGAGCACCCGGAGGCAGCCCAGAATGCAGGGCGGA
TTGTCTCCCGTAGGCTCCACCAAGCCTTGTCAGAGACCAGAGCTGAGGACAGTAGAGTTTTGTC
AACCTGAGTCTGCGCCATCCGATGCACCGACTCAGAGTTAAATATATTTAAAGCAGTTTGCTGT
GGCGTCTACTCCACAGCAATCCTGGCCTTCCTGTTGCCCCCCTCCCCCAGGCCTTCCTGCAGCC
GACCTCCCAACTAGGCTCTTGTTGAACTTGTGTAAAGTTACAGTCTTTTTCTATTGTTCTAACG
TTTTTATGGTTCTCAGATGTAACTTAAGAAAAAAAACAAACTAATTTTAGGTAGATAAAGAAGA
CAGTCTTGTGGAGAATAAAATCCTCTGAGTTCCAGAGACCTGAAAAGGTATCAAAGTCCTCACT
ATGATCTTTCTGTTTGCTCCACATGGGGAACAGCTGACCAGTTTCCAAAAACAAAGCAAGATAT
TTATTAAAACATGTAAAAATTTTGTTCCTGTCTGTTCCAAGGGCAGGCGCTTTCCCTGTCCCAC
AGCCGGGATGATGAGAACAAGGGAAGTGATTGGTCCATCCCATCCCATGCTGCCCTGTTACAGG
AACTCCCTCAGAGAGGCAGGGTATGACATTGTGGCTTTGTGCTTCATTTCCCCCCTGAAGGTGC
AACAGTATCTGCCTCCTCCAAGCACTGGTTGCACTCTCCTACAAGGTTACACTTGAACAGGAAA
CTGGCTAACCTCTGGGACAGGTGCTGAGTGTCCACAGCGCAACTTACCTTCTGAGAGCATCCTC
CCTCGTAGCTTCTCTATGAAGCGTTTGTTTGTTTGATCTTGATTTTTTTTTTTTAATCTCACCA
TGTAGCCTTCAACTTACTATGAAGCCCAGGCTGGTTTTGAACTAGTGAGCCCCCTGCCTCTGCC
TCTGGATTGTAGGTACGCATCATCGTGCCTGGCTCTCAGTAAGCATTTCTCAAATCCAAGTCCA
AGTTCTTCTCCCAGACTCAGGAGGCATGAGTTGGGGCCGTCAGCCCGTTTTCATCAGGAAGTCC
TGCTTAGTATCCTGTCTGGGGACAAAACAGGGTTTGTAGGGATGGGGGTCAGTCTGATATCCAT
CTCCCCATGCACTCCTGCTGAAGAATTGTTAACCTAAATAAATGTTGAATCTTCGGGGTTGGTT
CTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101819	(Get FASTA)	NCBI Sequence Viewer
	NP_001402666	(Get FASTA)	NCBI Sequence Viewer
	XP_008767885	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM09318	(Get FASTA)	NCBI Sequence Viewer
	EDM09319	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004387.7
	ENSRNOP00000074219.3
	ENSRNOP00000077388.1
	ENSRNOP00000084185
	ENSRNOP00000084185.1
	ENSRNOP00000106470
	ENSRNOP00000106470.1
	ENSRNOP00000111451
	ENSRNOP00000111451.1

RefSeq Acc Id:	NP_001101819 ⟸ NM_001108349
- Peptide Label:	isoform 1
- UniProtKB:	F1M4V3 (UniProtKB/TrEMBL), A6IDH8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEERPSETNSNVDSSAQPSVAQLAGRFREQAAVAREKSPSSTSHPPKIKVKSSPLIEKLQANLA FDPAALLPGASPKSPGLKAMVSPFHSPPSTPSSPGIRSHPGEAEEVPVSFDQPPEGTHLPSYNK VRTRGSIKRRPPSRRFRRSQSDCGDLRDYRAVEPSQENGAREENGDDVFPSKSKDPGSPQPNQE AGADRVEGTLRSTEKPRRRNTCSSTEKPEELVGTLEEANAGAKAGQTPDTASQGHPEVQEPSQT CSPETENGCGSPREETAPGEHTDTGKATEGTASEERVTEEEDGLGQKSPDANIPEDEVVRGKVP QTSSGEAEGTTVPEPEAKQKEEAPLEPSGSPGADHSAGEASNEIQSENAVSTEDIPVEDTRM hide sequence

RefSeq Acc Id:	XP_008767885 ⟸ XM_008769663
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZYN8 (UniProtKB/TrEMBL), A0A0G2K7I4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWMSSCKTPASKPTRRKPPCSLPLFPPKVELGQNGEEKSPSSTSHPPKIKVKSSPLIEKLQANL AFDPAALLPGASPKSPGLKAMVSPFHSPPSTPSSPGIRSHPGEAEEVPVSFDQPPEGTHLPSYN KVRTRGSIKRRPPSRRFRRSQSDCGDLRDYRAVEPSQENGAREENGDDVFPSKSKDPGSPQPNQ EAGADRVEGTLRSTEKPRRRNTCSSTEKPEELVGTLEEANAGAKAGQTPDTASQGHPEVQEPSQ TCSPETENGCGSPREETAPGEHTDTGKATEGTASEERVTEEEDGLGQKSPDANIPEDEVVRGKV PQTSSGEAEGTTVPEPEAKQKEEAPLEPSGSPGADHSAGEASNEIQSENAVSTEDIPVEDTRM hide sequence

Ensembl Acc Id:

ENSRNOP00000074219 ⟸ ENSRNOT00000082422

Ensembl Acc Id:

ENSRNOP00000004387 ⟸ ENSRNOT00000004387

Ensembl Acc Id:

ENSRNOP00000077388 ⟸ ENSRNOT00000113367

Ensembl Acc Id:

ENSRNOP00000084185 ⟸ ENSRNOT00000112592

RefSeq Acc Id:	NP_001402666 ⟸ NM_001415737
- Peptide Label:	isoform 2
- UniProtKB:	A0A0G2K7I4 (UniProtKB/TrEMBL), A6IDH9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000106470 ⟸ ENSRNOT00000166515

Ensembl Acc Id:

ENSRNOP00000111451 ⟸ ENSRNOT00000132206

Protein Domains

FAM21/CAPZIP RCSD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K7I4-F1-model_v2	AlphaFold	A0A0G2K7I4	1-412	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698962

Promoter ID:

EPDNEW_R9487

Type:

initiation region

Name:

Rcsd1_1

Description:

RCSD domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	83,916,994 - 83,917,054	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304715	AgrOrtholog
BioCyc Gene	G2FUF-17563	BioCyc
Ensembl Genes	ENSRNOG00000003283	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004387.8	UniProtKB/TrEMBL
	ENSRNOT00000082422.3	UniProtKB/TrEMBL
	ENSRNOT00000112592	ENTREZGENE
	ENSRNOT00000112592.2	UniProtKB/TrEMBL
	ENSRNOT00000113367.2	UniProtKB/TrEMBL
	ENSRNOT00000132206	ENTREZGENE
	ENSRNOT00000132206.1	UniProtKB/TrEMBL
	ENSRNOT00000166515	ENTREZGENE
	ENSRNOT00000166515.1	UniProtKB/TrEMBL
InterPro	FAM21/CAPZIP	UniProtKB/TrEMBL
	RCSD	UniProtKB/TrEMBL
NCBI Gene	360872	ENTREZGENE
PANTHER	CAPZ-INTERACTING PROTEIN	UniProtKB/TrEMBL
	CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS	UniProtKB/TrEMBL
Pfam	CAP-ZIP_m	UniProtKB/TrEMBL
	RCSD	UniProtKB/TrEMBL
PhenoGen	Rcsd1	PhenoGen
RatGTEx	ENSRNOG00000003283	RatGTEx
UniProt	A0A0G2K7I4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5YCC4_RAT	UniProtKB/TrEMBL
	A0A8I5ZYN8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LVR4_RAT	UniProtKB/TrEMBL
	A0ABK0M7W4_RAT	UniProtKB/TrEMBL
	A6IDH8	ENTREZGENE, UniProtKB/TrEMBL
	A6IDH9	ENTREZGENE, UniProtKB/TrEMBL
	F1M4V3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Rcsd1	RCSD domain containing 1	Rcsd1_predicted	RCSD domain containing 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Rcsd1_predicted	RCSD domain containing 1 (predicted)	RGD1304715_predicted	similar to Hypothetical protein MGC32399 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1304715_predicted	similar to Hypothetical protein MGC32399 (predicted)	LOC360872_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360872_predicted	similar to Hypothetical protein MGC32399 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD