Advanced Search (OLGA)

Gene: Tanc1 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1) Rattus norvegicus

Analyze

Symbol:

Tanc1

Name:

tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1

RGD ID:

1302949

Description:

Involved in regulation of postsynapse organization. Is active in glutamatergic synapse and postsynaptic density, intracellular component. Orthologous to human TANC1 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

KIAA1728; KIAA1728-like; Tanc; TPR domain, ankyrin-repeat and coiled-coil domain-containing protein 1; TPR domain, ankyrin-repeat and coiled-coil-containing

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	64,508,037 - 64,741,826 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	64,508,085 - 64,741,825 (+)	Ensembl				GRCr8
mRatBN7.2	3	44,099,387 - 44,335,478 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	44,134,016 - 44,331,627 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	47,490,202 - 47,687,759 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	56,074,068 - 56,271,326 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	53,843,843 - 54,041,444 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	45,683,773 - 45,917,687 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	45,683,993 - 45,917,745 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	50,829,732 - 51,029,507 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	41,364,205 - 41,563,655 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	42,180,810 - 42,377,519 (+)	NCBI		Celera
RGSC_v3.1	3	41,260,576 - 41,460,027 (+)	NCBI
Cytogenetic Map	3	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

bromobenzene (EXP)

caffeine (ISO)

calcitriol (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

coumarin (ISO)

Cuprizon (EXP)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dieldrin (ISO)

dioxygen (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

doxorubicin (EXP)

entinostat (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fipronil (EXP)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glyphosate (EXP)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nickel atom (ISO)

okadaic acid (ISO)

panobinostat (ISO)

paracetamol (ISO)

PCB138 (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (EXP)

temozolomide (ISO)

testosterone (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

dendritic spine maintenance (ISO)

myoblast fusion (ISO)

regulation of postsynapse organization (IBA,IDA,IMP)

visual learning (ISO)

Cellular Component

axon terminus (IEA,ISO)

dendrite (IEA,ISO)

dendritic spine (IEA)

glutamatergic synapse (IBA,IDA,IMP)

neuronal cell body (IEA,ISO)

postsynapse (IEA)

postsynaptic density (IEA)

postsynaptic density, intracellular component (IBA,IDA,IMP)

synapse (IEA)

Molecular Function

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Regulation of dendritic spines, spatial memory, and embryonic development by the TANC family of PSD-95-interacting proteins.	Han S, etal., J Neurosci. 2010 Nov 10;30(45):15102-12. doi: 10.1523/JNEUROSCI.3128-10.2010.
3.	MINK is a Rap2 effector for phosphorylation of the postsynaptic scaffold protein TANC1.	Nonaka H, etal., Biochem Biophys Res Commun. 2008 Dec 12;377(2):573-8. doi: 10.1016/j.bbrc.2008.10.038. Epub 2008 Oct 18.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15673434	PMID:22182840	PMID:25763846	PMID:30053369

Genomics

Comparative Map Data

Tanc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	64,508,037 - 64,741,826 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	64,508,085 - 64,741,825 (+)	Ensembl				GRCr8
mRatBN7.2	3	44,099,387 - 44,335,478 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	44,134,016 - 44,331,627 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	47,490,202 - 47,687,759 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	56,074,068 - 56,271,326 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	53,843,843 - 54,041,444 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	45,683,773 - 45,917,687 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	45,683,993 - 45,917,745 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	50,829,732 - 51,029,507 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	41,364,205 - 41,563,655 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	42,180,810 - 42,377,519 (+)	NCBI		Celera
RGSC_v3.1	3	41,260,576 - 41,460,027 (+)	NCBI
Cytogenetic Map	3	q21	NCBI

TANC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	158,968,640 - 159,232,659 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	158,968,581 - 159,232,668 (+)	Ensembl			hg38	GRCh38
GRCh37	2	159,825,152 - 160,089,170 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	159,533,392 - 159,797,416 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	153,441,921 - 153,703,650 (+)	NCBI		Celera
Cytogenetic Map	2	q24.2	NCBI
HuRef	2	151,714,007 - 151,975,495 (+)	NCBI		HuRef
CHM1_1	2	159,831,431 - 160,095,361 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	159,430,678 - 159,692,453 (+)	NCBI		T2T-CHM13v2.0

Tanc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	59,442,167 - 59,676,557 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	59,442,386 - 59,676,493 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	59,611,821 - 59,846,213 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	59,612,042 - 59,846,149 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	59,450,101 - 59,684,206 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	59,412,883 - 59,646,988 (+)	NCBI		MGSCv36	mm8
Celera	2	61,303,578 - 61,541,797 (+)	NCBI		Celera
Cytogenetic Map	2	C1.1	NCBI
cM Map	2	33.93	NCBI

Tanc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	14,353,693 - 14,530,861 (-)	Ensembl
ChiLan1.0	NW_004955449	14,353,693 - 14,586,010 (-)	NCBI	ChiLan1.0	ChiLan1.0

TANC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	61,657,390 - 61,921,086 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	61,672,459 - 61,936,049 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	46,251,797 - 46,521,577 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	163,632,616 - 163,895,940 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	163,729,504 - 163,895,940 (+)	Ensembl			panPan2	panpan1.1

TANC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	4,850,214 - 5,019,453 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	4,899,174 - 5,021,132 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	4,935,609 - 5,158,595 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	4,919,381 - 5,142,245 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	4,919,343 - 5,143,925 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	4,936,974 - 5,160,449 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	4,980,074 - 5,203,129 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	5,022,023 - 5,245,748 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tanc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	121,965,704 - 122,189,685 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	19,425,479 - 19,651,976 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	19,428,035 - 19,651,913 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TANC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	65,920,292 - 66,165,991 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	65,920,168 - 66,166,000 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	73,290,746 - 73,423,221 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TANC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	44,344,779 - 44,616,653 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	44,376,139 - 44,614,987 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	154,944,754 - 155,112,236 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tanc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	6,421,066 - 6,672,213 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624732	6,421,061 - 6,672,724 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tanc1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	37,320,953 - 37,549,568 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tanc1
1535 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	21
Count of miRNA genes:	20
Interacting mature miRNAs:	20
Transcripts:	ENSRNOT00000038983
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	47904172	92904172	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	48657744	93657744	Rat
10450816	Scl75	Serum cholesterol level QTL 75	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	58601291	71157804	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	37796919	82796919	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	3	47904172	70710963	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	38708931	67641995	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	38708931	67641995	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	38708931	67641995	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	38708931	67641995	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	38708931	67641995	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	47904172	70710963	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	38708931	67641995	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	67641995	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	48657744	93657744	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
10450852	Stl33	Serum triglyceride level QTL 33	3.4	0.05	blood LDL triglyceride amount (VT:0010699)	blood lipoprotein triglyceride level (CMO:0002685)	3	58601291	71157804	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
4889975	Bmd81	Bone mineral density QTL 81	4.3		tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	59119402	70710963	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
634317	Bw117	Body weight QTL 117	3.58		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	59863663	73704481	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	59863663	87321459	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	53651826	98651826	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	48876619	93876619	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	48876619	93876619	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	47904172	70710963	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	87321459	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	47904172	70710963	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	36425116	81425116	Rat
10450813	Scl74	Serum cholesterol level QTL 74	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	58601291	71157804	Rat
2302276	Bw82	Body weight QTL 82	4.32		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	83358329	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	48657744	93657744	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	50766145	95766145	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	50766145	95766145	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	83708931	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	48657744	93657744	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	37363734	82363734	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	48657744	93657744	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	47904172	70710963	Rat

Markers in Region

D3Rat44

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	44,188,278 - 44,188,411 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	45,772,860 - 45,772,990	NCBI	Rnor6.0
Rnor_5.0	3	50,884,680 - 50,884,810	UniSTS	Rnor5.0
RGSC_v3.4	3	41,420,306 - 41,420,436	UniSTS	RGSC3.4
RGSC_v3.4	3	41,420,305 - 41,420,436	RGD	RGSC3.4
Celera	3	42,235,046 - 42,235,186	UniSTS
RGSC_v3.1	3	41,316,678 - 41,316,808	RGD
RH 3.4 Map	3	577.9	RGD
RH 3.4 Map	3	577.9	UniSTS
RH 2.0 Map	3	321.4	RGD
SHRSP x BN Map	3	31.7698	RGD
FHH x ACI Map	3	30.5499	RGD
Cytogenetic Map	3	q21	UniSTS

D3Rat187

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	44,193,643 - 44,193,805 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	45,778,223 - 45,778,384	NCBI	Rnor6.0
Rnor_5.0	3	50,890,043 - 50,890,204	UniSTS	Rnor5.0
RGSC_v3.4	3	41,425,668 - 41,425,830	RGD	RGSC3.4
RGSC_v3.4	3	41,425,669 - 41,425,830	UniSTS	RGSC3.4
Celera	3	42,240,420 - 42,240,581	UniSTS
RGSC_v3.1	3	41,322,040 - 41,322,202	RGD
SHRSP x BN Map	3	31.7698	RGD
SHRSP x BN Map	3	31.7698	UniSTS
Cytogenetic Map	3	q21	UniSTS

D3Got267

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	44,212,749 - 44,212,900 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	45,797,323 - 45,797,473	NCBI	Rnor6.0
Rnor_5.0	3	50,909,143 - 50,909,293	UniSTS	Rnor5.0
RGSC_v3.4	3	41,444,786 - 41,444,936	UniSTS	RGSC3.4
Celera	3	42,259,071 - 42,259,221	UniSTS
Cytogenetic Map	3	q21	UniSTS

AU048023

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	44,316,739 - 44,316,948 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	45,901,307 - 45,901,513	NCBI	Rnor6.0
Rnor_5.0	3	51,013,127 - 51,013,333	UniSTS	Rnor5.0
RGSC_v3.4	3	41,548,769 - 41,548,975	UniSTS	RGSC3.4
Celera	3	42,362,645 - 42,362,851	UniSTS
Cytogenetic Map	3	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	79	59	6	343	179	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001002854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB098072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000038983 ⟹ ENSRNOP00000033136

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	64,508,085 - 64,741,825 (+)	Ensembl
mRatBN7.2 Ensembl	3	44,134,016 - 44,331,627 (+)	Ensembl
Rnor_6.0 Ensembl	3	45,683,993 - 45,917,745 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115662 ⟹ ENSRNOP00000088260

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	64,624,274 - 64,741,825 (+)	Ensembl
mRatBN7.2 Ensembl	3	44,215,562 - 44,331,627 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000165443 ⟹ ENSRNOP00000102096

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	64,654,162 - 64,741,825 (+)	Ensembl

RefSeq Acc Id:

NM_001002854 ⟹ NP_001002854

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,542,747 - 64,740,332 (+)	NCBI
mRatBN7.2	3	44,134,016 - 44,331,627 (+)	NCBI
Rnor_6.0	3	45,718,581 - 45,916,193 (+)	NCBI
Rnor_5.0	3	50,829,732 - 51,029,507 (+)	NCBI
RGSC_v3.4	3	41,364,205 - 41,563,655 (+)	RGD
Celera	3	42,180,810 - 42,377,519 (+)	RGD

Sequence:

show sequence

TGAGTGTTGGGCACGACGTACAGGAAAAGGACAGGAGAGAGAACTGAGACTTAAGGACCACCGC
GCAGAGTTTCCTCTGTGAACGAGAAGATAACAGAGACAGAGACAAAAGAGTGTTGAAAATGTTG
AAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGTAAAGGGAAGCAAGAAGGAAGCAGGAGGTGACT
TTGGCTCAGAGACGCCCACCTTGTCCTCCAGTGGTGACTCTCCTGTGAACAGTTTGTCCACAAC
AGAGGACACCTACCGTGTGAGCTTGGCCAAAGGGGTCTCCATGTCTCTTCCTTCATCACCTTTG
CTGCCTCGACAATCTCACCTGACACAGTCAAGGGCGAACAAAAAGTCTCCAGGTCCCGTCAGGA
AGCCCAAGTATGTGGAAAGCCCCAGGGTACCAGGAGATCCAGTTATGATTCCCTTCAGAGAAGG
GTCCAAGCCCGCAGAGCCCATCGAGACTGAAGCAAAGGTGGATAATGAACCGAGCTGCTCTCCA
GCAGCACAGGAACTGTTGACAAGACTGGGATTTTTACTGGGAGAGGGGATCCCAAGTGCCACAC
ACATAACCATCGAAGACAAAAATGAAGCCATGTGCACAGCCCTGAGTCAAGGCATCAGTCCTTG
CTCCACACTGACAAGCAGCACCGCCTCTCCCAGCACAGATAGCCCCTGCTCAACCTTGAATAGC
TGTGTCAGCAAGACGGCAGCCAACAAAAGCCCCTGTGAGACCATTAGCAGCCCTAGTTCCACCC
TGGAGAGCAAGGACAGTGGAATTATAGCCACAATTACCAGTTCATCGGAAAATGATGACCGGAG
TGGCTCCAGTCTGGAATGGAATAGAGATGGAAGCCTGAGGTTAGGGGTTCAGAAGGGAGTGCTT
CATGACCGAAGGCTGGATAACTGTTCCCCAGTGGCAGAAGAGGAGACTACTGGGTCGGCGGAGA
GCGTACTGCCCAAGGCGGAATCCTCAGCTGGAGATGGTCCGGTCCCTTATTCTCAGAGCTCAGG
CTCGCTAATAATGCCACGGCCCAACTCAGTTGCAGCGACAAGTTCTACCAAATTGGAAGACTTG
AGCTATTTAGACGGACAGAGAAATGCTCCTCTCCGGACGTCGATTAGATTGCCCTGGCACAGTA
CGGCTGGAGCACGGTTTGCTCCCTACAAACCACAGGAGATTTTGTTGAAGCCCTTGCTTTTCGA
AGTGCCAAGCATCACGACCGACTCTGTGTTTGTGGGAAGAGATTGGCTCTTTCAACAGATAGAA
GAGAACTTGAGGAACACAGAACTGGCAGAAAACAGAGGAGCAGTGGTGGTGGGAAATGTAGGGT
TTGGGAAGACAGCCATCATTTCCAAGTTGGTGGCACTGAGCTGTCATGGAAGCCGCATGAGACA
GGTAGCATCCAGCAGCCCCAGTTCATCTCTCAAAACCTCAGATCCCACCCATGACCTTCCCGGT
ACTCCGTTACTTTCACCAAGTTCTTCCACAAGCGCTCTCAGTGCGGCCAGAACACCTCCCGGGC
CCGGTACTGTTGACAGCCAGAGACCAAGAGAGGATGCGGTGAAATACCTCGCCTCTAGGGTGGT
GGCCTACCATTACTGCCAGGCAGACAACACGTACACGTGTCTGGTACCTGAGTTTGTGCACAGC
ATTGCAACTTTGCTGTGCCGGTCCCACCAGCTGGCTGCCTACCGAGACCTTCTGATCAGGGAGC
CCCAGCTACAGAGCATGCTGAACCTCCGCTCCTGTGTGCAGGATCCTGTGGCTGCTTTCAAGAG
GGGCATCCTGGAGCCACTTACAAACCTAAGAAACGAGCAGAAAATTCCAGAAGAGGAATACATC
ATCTTGATAGATGGCTTGAATGAAGCCGAATTTCATAAGCCTGATCACGGGGACACGCTGTCTT
CATTCATTACCAAAATCATTCCTAAGTTCCCCCCCTGGCTGAAGTTGATCGTGACCGTGAGAGC
AGATTTTCAGGAAATCATCAGCACGCTGCCTTTTGTCAAGCTTTCCTTAGACGACTTCCCAGGC
AACCAGGACATCCACAGCGACCTGCACGCATACGTCCAGCACAGGGTCCACAGCAGTCAGGACA
TCCTCAGCAACATCTCCCTGAACGGCAAGGCCGACGCCGCCCTCATCGGCAAAGTCAGCAGCCG
CCTGGTGCTGCGGAACCTTGGCTCCTACCTGTACCTCAAGCTCACGCTGGACCTCTTCCAGCGG
GGCCACCTGGTCATAAAGAGCGCCAGCTACAAGGTGGTGCCTGTGTCTCTGTCTGAACTCTATT
TGCTGCAGTGCAACATGAAGTTCATGACCCAGTCTGCCTTCGACCGAGCCCTTCCCATTTTGAA
CGTGGCCCTCGCGTCCCTCCACCCCATGACGGATGAGCAGATATTCCAGGCGATCAACGCCGGC
CACATCCAAGGCGAGCAGGGCTGGGAGGACTTTCAGCAGAAGATGGAGGCCCTCTCTTGCTTCC
TCATTAAGAAGAGAGACAAAACCCGGATGTTCTGCCACCCGTCCTTCAGAGAGTGGCTGGTGTG
GAGAGCGGATGGCGAAAGCACAGCCTTCCTGTGTGAGCCCAGGAATGGACACGCTCTACTGGCG
TTCATGTTTTCTCGACAGGAAAGCAAGCTGAACCGCCAGCAGACCGTGGAGCTTGGCCACCACA
TCCTGAAGGCACACATTTTCAAGGGCCTCAGTAAGAAGACTGGAGTCTCCTCAAGCCATCCGCA
GGCCCTGTGGATTGGCTACAGCACAGAGGGGCTGTCTGCTGCCCTGGCTTCTCTCAGGAATCTC
TACACTCCCAATGTAAAGGTGAGCCGGCTCCTGATCTTGGGAGGGGCCAACGTGAACTACAGGA
CAGAAGTGTTAAACAACGCCCCCATCCTGTGCGTCCAGTCTCACCTTGGCCATGAGGAAGTTGT
CACGCTCCTGCTGGAATTTGGCGCCTGCCTGGACGGGATGTCGGAGAATGGAATGAACGCACTG
TGTTACGCAGCTGCTGCCGGCCACATGAAGCTGGTGTGTTTGCTGACCAAGAAGGGGGCAAGGG
TGGACCACTTGGATAAGAAGGGCCAGTGTGCACTCGTCCACAGCGCGCTGAGGGGCCACAGTGA
CATTCTCCAGTACCTACTGAACTGTGAGTGGTCGGCAGGCCCTCCGCAGCCTGGCACCCTGAGG
AAGAGCCAAGCCCTGCAGCAGGCACTGACAGCAGCCGCCAGCATGGGCCACAGCGCGGTCGTCC
AGTCCTTGCTGGGAATGGCAGAGGAACATGAAATCGAGGTCAATGGCACCGACACATTGTGGGG
AGAAACAGCGCTGACTGCCGCGGCTGGGAGAGGAAAGCTGGAGATCTGCGAGCTTCTGCTGGAG
CGTGGAGCGGCCGTGTCTCGGGCCAACAGGAGAGGGGTACCCCCTCTGTTTTGTGCAGCCCGCC
AGGGGCATTGGCAGGTCGTGCAATTGCTTTTGGATCGGGGCTGTGACGTGAACCCGAATGACAA
GCAGGGTCGGACACCTCTCATGGTGGCTGCCTGTGAAGGACACCTGAGCACCGTGGAATTTCTC
CTCTCCAAAGGTGCTGCTCTTTCTTCCCTGGACAAAGAGGGCCTGTCGGCATTGAGCTGGGCTT
GTCTGAAGGGTCACAGGGCAGTGGTCCAGTATCTGGTCGAAGAAGGAGCAGAAATAGACCAAAC
AGACAAAAATGGCCGTACTCCCTTGGACCTGGCCGCCTTCTATGGTGATGCAGAGACTGTGCTG
TACCTGGTGGAGAAAGGAGCCGTGATAGAACACGTGGACCACAGTGGGATGCGCCCCCTGGACA
GAGCCATCGGTTGCCGAAACACCGCTGTAGTGGTTACACTGCTGAGAAAAGGAGCCAAACTAGG
AAATGCCGCTTGGGCGATGGCCACTTTCAAACCTGATATTCTGATCATACTTTTACAGAAATTG
ATGGAGGAAGGAAATGTGATGTACAAGAAAGGGAAGATGAAGGAGGCAGCCCAGAGGTACCAGT
ATGCCTTACGGAAGTTCCCTCGGGAAGGACCCGGAGAAGACATGAGGCCATTCAATGAGCTGAG
AGTCTCCCTCTATCTCAACCTGTCGAGATGCCGAAGGAAAACCAATGACTTTGGCTTGGCAGAA
GAATTTGCTTCAAAGGCTCTGGAACTGAAACCGAAATCCTATGAAGCCTTTTATGCCCGGGCAA
GAGCAAAAAGGAACAGCAGGCAGTTCCTGGCTGCTCTGGCTGACCTGCAGGAGGCTGTGAAACT
CTGTCCCACCAATCAGGAAATCAAGCGGCTTTTGGCCCGTGTTGAAGAAGAGTGTAAACAACTC
CAGAGGAACCAGCAGCAAAAACAGCAGGCACCCCTGCCGGCTCCACCCAATGACTCTGATAATG
ATGAGGAAGCCCCAGCCTCTAGTCTAAAAGACCACTTCCCCATTGAGGAGGCAGAGGAGGAAGA
CACCTCTTCACAAGAAGAGTCCATTTCCCCGACTCCCAGATCCCAGCCACCACCATCTGTCCCT
TCCCCATATATCCGCAACCTTCAAGAGGGATTACAGTCCAAAGGCAGGCCAGCGTCCCCACAGA
GCTGGGCAGGAATCAGTAAGTCCCTGAGAGAGACTGTAGCTCAGCCAGGTTTGGTTATGCAGCC
GACCAAACAGGCGCAGATCGTGAAGACCAATCAACATCTAGGTTCTGGGCAATCCAGCATGAGG
AACAGTAACACCAAAGTACAGGTCTCTTCTCAGAACCCTCCCCCAAGCCCAATGCCAGGTAGAG
TATCTGCAGCCCCTGCCGTGAGCAGAAACCAGCATTTAGAGGGAACGGGTCCCTTCAGTACAGG
AACTGGTTGTGGTCACTTCGGGGATCGGCTGGGCCCCAGCCAGAGCCTCCAGCTGCAGCGCGGT
GAGAGCGGCACTGCGTATCCTCTCCCGAGCAAAGTCAAAGCAGCCGAGAGGCTCCTGGCTCACG
CCTCTGTGGCTGTGGACATGGCCCTTCCGAGCCAGGGTGGACCAGTGAGCTGCAGCGATGTGCG
GCACCCAGCTTCCCTCAGCAGCTCCGGCTCGTCCGGCTCTCCATCCAGCAGCGTAAAGATGTCG
AGCTCCACCAGTAGCTTGACTTCAAGCAGTAGCGTTTCAGACGGATTCAAGGCCCAAGGACCAG
ACTGTAGAATCAGAGACAGAGGTACAACTCAGGTGCAGGGTGGCACTGCCGAACACAGGCCCCG
CAACACTCCATTCATGGGCATCATGGACAAGATCGCCAGGTTCCAGCAGCAAGTCAACCCTCCG
AGCCGCTCCTGGCACTGCCCGGTGACAGAGGGACTACTGACAAACACAGCCACTGCAGCCGGCC
TGCAGACTAACTCTGAGAAACCCGCCCTCAAGCCCGGAGGATATTGTAGCCAAGCCAAGCCGTG
TTCAGTTCCCCCCCTGGGCATGGGTGTCCACAATGGGGCTCAGGTGAAGGAGCTGGAAGAAAAT
AAGTGCCAAGTTCCAGCCCTCTGTCAAGACAACAGGAAAACTAAGGGTGTGCCCCATCTCTACC
CGGAAGGCGTCTCTAAGCAGCCGCTTCATGTCAGTACGGAAGCCCACAGGAGCCACCTCACTTC
AGCGAAACCAAAGCGATCGTTCATAGAGTCCAATGTGTGAGCCTTAAGCAACCCCTGTGTAGAA
TCTGGAGTGCAGTCTGTTGGCTCGTGGTGATAAATAATGTCTTTTTTTCATAATAAAAATTACC
TGTTAGCCATATTTTCCACCTCTTGGGTGGATCTGATGCCATTGACATATTAAAACTGT

hide sequence

RefSeq Acc Id:

XM_006234204 ⟹ XP_006234266

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,508,037 - 64,741,826 (+)	NCBI
mRatBN7.2	3	44,099,387 - 44,335,478 (+)	NCBI
Rnor_6.0	3	45,683,773 - 45,917,687 (+)	NCBI
Rnor_5.0	3	50,829,732 - 51,029,507 (+)	NCBI

Sequence:

show sequence

CGGGTCTCAAAGCCCTGGCAGCTCGGGTCGGGAGGGGCGCGCGAGGCGCAGCCCCGGCGGGCGC
GTACTGAGAAGGTGCCTTCCGGAACACGCGCAAGGGCGGGGACTCGCGCTGCCAATGAGGTCCC
GGTGTGGGCCGAGCGAGGCGCGGGGACGGGCCGGAGCGCTGCCTCCGCGGTGGCAGCTGCGGGA
GCCCGGCTCGGGAGCCGCAGGAGCCGCAGCCGCCGAGTGCCCAGCCCGCCGCGCTCTGAGGCCC
GGCCCCCGGGGTGGGAACCGCGCCGAAAGCTGGAAACTTTCCTGGCAGGAGCTGAGTGTTGGGC
ACGACGTACAGGAAAAGGACAGGAGAGAGAACTGAGACTTAAGGACCACCGCGCAGAGTTTCCT
CTGTGAACGAGAAGATAACAGAGACAGAGACAAAAGAGTGTTGAAAATGTTGAAGGCTGTGCTG
AAGAAGAGCCGAGAGGGAGTAAAGGGAAGCAAGAAGGAAGCAGGAGGTGACTTTGGCTCAGAGA
CGCCCACCTTGTCCTCCAGTGGTGACTCTCCTGTGAACAGTTTGTCCACAACAGAGGACACCTA
CCGTGTGAGCTTGGCCAAAGGGGTCTCCATGTCTCTTCCTTCATCACCTTTGCTGCCTCGACAA
TCTCACCTGACACAGTCAAGGGCGAACAAAAAGTCTCCAGGTCCCGTCAGGAAGCCCAAGTATG
TGGAAAGCCCCAGGGTACCAGGAGATCCAGTTATGATTCCCTTCAGAGAAGGGTCCAAGCCCGC
AGAGCCCATCGAGACTGAAGCAAAGGTGGATAATGAACCGAGCTGCTCTCCAGCAGCACAGGAA
CTGTTGACAAGACTGGGATTTTTACTGGGAGAGGGGATCCCAAGTGCCACACACATAACCATCG
AAGACAAAAATGAAGCCATGTGCACAGCCCTGAGTCAAGGCATCAGTCCTTGCTCCACACTGAC
AAGCAGCACCGCCTCTCCCAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAG
ACGGCAGCCAACAAAAGCCCCTGTGAGACCATTAGCAGCCCTAGTTCCACCCTGGAGAGCAAGG
ACAGTGGAATTATAGCCACAATTACCAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTCT
GGAATGGAATAGAGATGGAAGCCTGAGGTTAGGGGTTCAGAAGGGAGTGCTTCATGACCGAAGG
GCTGATAACTGTTCCCCAGTGGCAGAAGAGGAGACTACTGGGTCGGCGGAGAGCGTACTGCCCA
AGGCGGAATCCTCAGCTGGAGATGGTCCGGTCCCTTATTCTCAGAGCTCAGGCTCGCTAATAAT
GCCACGGCCCAACTCAGTTGCAGCGACAAGTTCTACCAAATTGGAAGACTTGAGCTATTTAGAC
GGACAGAGAAATGCTCCTCTCCGGACGTCGATTAGATTGCCCTGGCACAGTACGGCTGGAGGTA
GGGCACAGGAAGTTAAAGCACGGTTTGCTCCCTACAAACCACAGGAGATTTTGTTGAAGCCCTT
GCTTTTCGAAGTGCCAAGCATCACGACCGACTCTGTGTTTGTGGGAAGAGATTGGCTCTTTCAA
CAGATAGAAGAGAACTTGAGGAACACAGAACTGGCAGAAAACAGAGGAGCAGTGGTGGTGGGAA
ATGTAGGGTTTGGGAAGACAGCCATCATTTCCAAGTTGGTGGCACTGAGCTGTCATGGAAGCCG
CATGAGACAGATAGCATCCAGCAGCCCCAGTTCATCTCTCAAAACCTCAGATCCCACCCATGAC
CTTCCCGGTACTCCGTTACTTTCACCAAGTTCTTCCACAAGCGCTCTCGGTGCGGCCAGAACAC
CTCCCGGGCCCGGTACTGTTGACAGCCAGAGACCAAGAGAGGATGCGGTGAAATACCTCGCCTC
TAAGGTGGTGGCCTACCATTACTGCCAGGCAGACAACACGTACACGTGTCTGGTACCTGAGTTT
GTGCACAGCATTGCAGCTTTGCTGTGCCGGTCCCACCAGCTGGCTGCCTACCGAGACCTTCTGA
TCAGGGAGCCCCAGCTACAGAGCATGCTGAACCTCCGCTCCTGTGTGCAGGATCCTGTGGCTGC
TTTCAAGAGGGGCATCCTGGAGCCACTTACAAACCTAAGAAACGAGCAGAAAATTCCAGAAGAG
GAATACATCATCTTGATAGATGGCTTGAATGAAGCCGAATTTCATAAGCCTGATTACGGGGACA
CGCTGTCTTCATTCATTACCAAAATCATTCCTAAGTTCCCCCCCTGGCTGAAGTTGATCGTGAC
CGTGAGAGCAGATTTTCAGGAAATCATCAGCACGCTGCCTTTTGTCAAGCTTTCCTTAGACGAC
TTCCCAGGCAACCAGGACATCCACAGCGACCTGCACGCATACGTCCAGCACAGGGTCCACAGCA
GTCAGGACATCCTCAGCAACATCTCCCTGAACGGCAAGGCCGACGCCGCCCTCATCGGCAAAGT
CAGCAGCCACCTGGTGCTGCGGAGCCTTGGCTCCTACCTGTACCTCAAGCTCACGCTGGACCTC
TTCCAGCGGGGCCACCTGGTCATAAAGAGCGCCAGCTACAAGGTGGTGCCTGTGTCTCTGTCTG
AGCTCTATTTGCTGCAGTGCAACATGAAGTTCATGACCCAGTCTGCCTTCGACCGAGCCCTTCC
CATTTTGAACGTGGCCCTCGCGTCCCTCCACCCCATGACGGATGAGCAGATATTCCAGGCGATC
AACGCCGGCCACATCCAAGGCGAGCAGGGCTGGGAGGACTTTCAGCAGAGGATGGAGGCCCTCT
CTTGCTTCCTCATTAAGAGGAGAGACAAAACCCGGATGTTCTGCCACCCGTCCTTCAGAGAGTG
GCTGGTGTGGAGAGCGGATGGCGAAAGCACAGCCTTCCTGTGTGAGCCCAGGAATGGACACGCT
CTACTGGCGTTCATGTTTTCTCGACAGGAAAGCAAGCTGAACCGCCAGCAGACCGTGGAGCTTG
GCCACCACATCCTGAAGGCACACATTTTCAAGGGCCTCAGTAAGAAGACTGGAGTCTCCTCAAG
CCATCTGCAGGCCCTGTGGATTGGCTACAGCACAGAGGGGCTGTCTGCTGCCCTGGCCTCTCTC
AGGAATCTCTACACTCCCAATGTAAAGGTGAGCCGGCTCCTGATCTTGGGAGGGGCCAACGTGA
ACTACAGGACAGAAGTGTTAAACAACGCCCCCATCCTGTGCGTCCAGTCTCACCTTGGCCATGA
GGAAGTTGTCACGCTCCTGCTGGAATTTGGCGCCTGCCTGGACGGGATGTCGGAGAATGGAATG
AACGCACTGTGTTACGCAGCTGCTGCCGGCCACATGAAGCTGGTGTGTCTGCTGACCAAGAAGG
GGGCAAGGGTGGACCACTTGGATAAGAAGGGCCAGTGTGCACTCGTCCACAGCGCGCTGAGGGG
CCACAGTGACATTCTCCAGTACCTACTGAACTGTGAGTGGTCGGCAGGCCCTCCGCAGCCTGGC
ACCCTGAGGAAGAGCCAAGCCCTGCAGCAGGCACTGACAGCAGCCGCCAGCATGGGCCACAGCG
CGGTCGTCCAGTCCTTGCTGGGAATGGCAGAGGAACATGAAATCGAAGTCAATGGCACCGACAC
ATTGTGGGGAGAAACAGCGCTGACTGCCGCGGCTGGGAGAGGAAAGCTGGAGATCTGCGAGCTT
CTGCTGGAGCGTGGAGCGGCCGTGTCTCGGGCCAACAGGAGAGGGGTACCCCCTCTGTTTTGTG
CAGCCCGCCAGGGGCATTGGCAGGTCGTGCAATTGCTTTTGGATCGGGGCTGTGACGTGAACCT
GAATGACAAGCAGGGTCGGACACCTCTCATGGTGGCTGCCTGTGAAGGACACCTGAGCACCGTG
GAATTTCTCCTCTCCAAAGGTGCTGCTCTTTCTTCCCTGGACAAAGAGGGCCTGTCGGCATTGA
GCTGGGCTTGTCTGAAGGGTCACAGGGCAGTGGTCCAGTATCTGGTCGAAGAAGGAGCAGAAAT
AGACCAAACAGACAAAAATGGCCGTACTCCCTTGGACCTGGCCGCCTTCTATGGTGATGCAGAG
ACTGTGCTGTACCTGGTGGAGAAAGGAGCCGTGATAGAACACGTGGACCACAGTGGGATGCGCC
CCCTGGACAGAGCCATCGGTTGCCGAAACACCGCTGTAGTGGTTACACTGCTGAGAAAAGGAGC
CAAACTAGGAAATGCCGCTTGGGCGATGGCCACTTCCAAACCTGATATTCTGATCATACTTTTA
CAGAAATTGATGGAGGAAGGAAATGTGATGTACAAGAAAGGGAAGATGAAGGAGGCAGCCCAGA
GGTACCAGTATGCCTTACGGAAGTTCCCTCGGGAAGGACTCGGAGAAGACATGAGGCCATTCAA
TGAGCTGAGAGTCTCCCTCTATCTCAACCTGTCGAGATGCCGAAGGAAAACCAATGACTTTGGC
TTGGCAGAAGAATTTGCTTCAAAGGCTCTGGAACTGAAACCGAAATCCTATGAAGCCTTTTATG
CCCGGGCAAGAGCAAAAAGGAACAGCAGGCAGTTCCTGGCTGCTCTGGCTGACCTGCAGGAGGC
TGTGAAACTCTGTCCCACCAATCAGGAAATCAAGCGGCTTTTGGCCCGTGTTGAAGAAGAGTGT
AAACAACTCCAGAGGAACCAGCAGCAGAAACAGCAGGCACCCCTGCCGGCTCCACCCAATGACT
CTGATAATGATGAGGAGGCCCCAGCCTCTAGTCTAAAAGACCACTTCCCCATTGAGGAGGCAGA
GGAGGAAGACACCTCTTCACAAGAAGAGTCCATTTCCCCGACTCCCAGATCCCAGCCACCACCA
TCTGTCCCTTCCCCATATATCCGCAACCTTCAAGAGGGATTACAGTCCAAAGGCAGGCCAGCGT
CCCCACAGAGCAGGGCAGGAATCAGTAAGTCCCTGAGAGAGACTGTAGCTCAGCCAGGTTTGGT
TATGCAGCCGACCAAACAGGCGCAGATCGTGAAGACCAATCAACATCTAGGTTCTGGGCAATCC
AGCATGAGGAACAGTAACACCAAAGTACAGGTCTCTTCTCAGAACCCTCCCCCAAGCCCAATGC
CAGGTAGAGTATCTGCAGCCCCTGCCGTGAGCAGAAACCAGCATTTAGAGGGAACGGGTCCCTT
CAGTACAGGAACTGGTTGTGGTCACTTCGGGGATCGGCTGGGCCCCAGCCAGAGCCTCCAGCTG
CAGCGCGGTGAGAGCGGCACTGCGTATCCTCTCCCGAGCAAAGTCAAAGCAGCCGAGAGGCTCC
TGGCTCACGCCTCTGTGGCTGTGGACATGGCCCCTCCGAGCCAGGGTGGACCAGTGAGCTGCAG
CGATGTGCGGCACCCAGCTTCCCTCAGCAGCTCCGGCTCGTCCGGCTCTCCATCCAGCAGCGTA
AAGATGTCGAGCTCCACCAGTAGCTTGACTTCAAGCAGTAGCGTTTCAGACGGATTCAAGGCCC
AAGGACCAGACTCTAGAATCAGAGACAGAGGTACAACTCAGGTGCAGGGTGGCACTGCCGAACA
CAGGCCCCGCAACACTCCATTCATGGGCATCATGGACAAGACCGCCAGGTTCCAGCAGCAAGTC
AACCCTCCGAGCCGCTCCTGGCACTGCCCGGTGACAGAGGGACTACTGACAAACACAGCCACTG
CAGCCGGCCTGCAGACTAACTCTGAGAAACCCGCCCTCAAGCCCGGAGGATATTGTAGCCAAGC
CAAGCCGTGTTCAGTTCCCCCCCTGGGCATGGGTGTCCACAATGGGGCTCAGGTGAAGGAGCTG
GAAGAAAATAAGTGCCAAATTCCAGCCCTCTGTCAAGACAACAGGAAAACTAAGGGTGTGCCCC
ATCTCTACCCGGAAGGCGTCTCTAAGCAGCCGCTTCATGTCAGTACGGAAGCCCACAGGAGCCA
CCTCACTTCAGCGAAACCAAAGCGATCGTTCATAGAGTCCAATGTGTGAGCCTTAAGCAACCCC
TGTGTAGAATCTGGAGTGCAGTCTGTTGGCTCGTGGTGATAAATAATGTCTTTTTTTCATAATA
AAAATTACCTGTTAGCCATATTTTCCACCTCTTGGGTGGATCTGATGCCATTGACATATTAAAA
CTGTAGGATAAAACTATAGTTAAGTAGCTAGAAATCAGCCATAAACAGAAATACTAAACAGCAT
TGAAAACCGTTGTCAGCTTTTATCTGGCGATTTAAAGGCTGCCAAGAAGACATCAACCAATGCC
GTTCTCTTAGGAAATCATTTGGTTTGCTAAGTGTAAGCGGAAAAAAAGAGAAGGGGGGGGGGGG
AAGTCCACTGGTAAAAGTTTTTTAACTCCTGACGTCATAATATCTCGAAGTGTATTCTGGAAAA
GATTGGGGGCGGGGATTTTTTTAAGTTCCAGATTCCTTAAGTCAAACCTGTCCTTACATATGTG
TGAAACTTGCAACCTGAGTGGTATCTAGCTGGATGTCAATGTGACTTTTTTTCTGTCAGTGAAA
TACAAGGGCACCCATGTATCATTCCCGTCATGGTGGTTACGCAAGGTGACCAAACACCGACTTC
CATGATATGGTCATCTGTAGAGTATTTTTATTTTATAGCCCCCTTTTTGGAACTATATTTATGC
TTCACAGTGTTACTGAGAAGAGGGAACAGGCTAGCTAGAATTTTGACTGGTGTCCAGGTCAGAG
TTGGGCAAAAGTCCCAAAAAGGGCACTCTTAGTGGCGGCAACAAATTAGCCCTAACTGGTTCCA
AAAGTGTTCTGGACAGTGACCGTCCCCGAAACGAGCCTCCAGTGTCCTGTAGGGACAGTGGTCA
GACAGGATCCTTGAGGTCTGGGTGATGGTTTTGTTTCCTTACGCAGCCCGCTGTTTCATAGTCA
CTTGTTATGTATGTATGTGTATATATATGTATATATATAGCCCATTTTATTCAGGCTTGTAAAT
AGAACTCAAAGGAAGCTAATCTGAAGACACACAGCAGGACCCCGCCTGCCATCTCTCCGCATGT
TCTTTGTGAGCGCTATGCTGGTTACCACACAGAACGATGTGTTATCATGGCTTGTCACAGAATA
CCCGCAATGGCACTTTATCTCATTTGTACGGATGTACAGACACCTCTGAGGTGCTACTTAAATC
CAGGCTGACATATTTTTCATCTGTAAAGATAAGGTACAAGAATGAACCTTGGTTTGAGGTATTT
TTATATGAAAATGGTGTTATTTGGAAGATGTTCAAATGCTGGTTTGAGAGAGGTGGGGGGGCAG
TATTTTATATGTCGAGATGTGAAATGTATTTTCTAGATCGGGGAGAAGGAAGTTCTATATTTGC
AGAATGTTTTAGACATGAGTATCCACGATGCTCCTCTGAACATCATTAAGGTTTTGTATGGAAA
GGAACCTTGCAGCGTCATTCAGTGTGTCTGTTCCTGTGTGTTGTATGCTTTGTACAAAAAGCTA
GGTCGTTGTTCTAAGCTCTCTCTGAGTTCCGCTTTAACTATACGGCTTATTTATTGTTTTCTTT
AATATTTGTGAACGTCTTACTCTTTGGTTATGTAGTTTGTTTCTGCACAACTACTGTACTTTTC
CACACAGAATAAAGACCATTACTTCA

hide sequence

RefSeq Acc Id:

XM_017591681 ⟹ XP_017447170

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,508,038 - 64,741,826 (+)	NCBI
mRatBN7.2	3	44,099,387 - 44,335,478 (+)	NCBI
Rnor_6.0	3	45,683,774 - 45,917,687 (+)	NCBI

Sequence:

show sequence

GGGTCTCAAAGCCCTGGCAGCTCGGGTCGGGAGGGGCGCGCGAGGCGCAGCCCCGGCGGGCGCG
TACTGAGAAGGTGCCTTCCGGAACACGCGCAAGGGCGGGGACTCGCGCTGCCAATGAGGTCCCG
GTGTGGGCCGAGCGAGGCGCGGGGACGGGCCGGAGCGCTGCCTCCGCGGTGGCAGCTGCGGGAG
CCCGGCTCGGGAGCCGCAGGAGCCGCAGCCGCCGAGTGCCCAGCCCGCCGCGCTCTGAGGCCCG
GCCCCCGGGGTGGGAACCGCGCCGAAAGCTGGAAACTTTCCTGGCAGGAGCTGAGTGTTGGGCA
CGACGTACAGGAAAAGGACAGGAGAGAGAACTGAGACTTAAGGACCACCGCGCAGAGTTTCCTC
TGTGAACGAGAAGATAACAGAGACAGAGACAAAAGAGTGTTGAAAATGTTGAAGGCTGTGCTGA
AGAAGAGCCGAGAGGGAGTAAAGGGAAGCAAGAAGGAAGCAGGAGGTGACTTTGGCTCAGAGAC
GCCCACCTTGTCCTCCAGTGGTGACTCTCCTGTGAACAGTTTGTCCACAACAGAGGACACCTAC
CGTGTGAGCTTGGCCAAAGGGGTCTCCATGTCTCTTCCTTCATCACCTTTGCTGCCTCGACAAT
CTCACCTGACACAGTCAAGGGCGAACAAAAAGTCTCCAGGTCCCGTCAGGAAGCCCAAGTATGT
GGAAAGCCCCAGGGTACCAGGAGATCCAGTTATGATTCCCTTCAGAGAAGGGTCCAAGCCCGCA
GAGCCCATCGAGACTGAAGCAAAGGTGGATAATGAACCGAGCTGCTCTCCAGCAGCACAGGAAC
TGTTGACAAGACTGGGATTTTTACTGGGAGAGGGGATCCCAAGTGCCACACACATAACCATCGA
AGACAAAAATGAAGCCATGTGCACAGCCCTGAGTCAAGGCATCAGTCCTTGCTCCACACTGACA
AGCAGCACCGCCTCTCCCAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGA
CGGCAGCCAACAAAAGCCCCTGTGAGACCATTAGCAGCCCTAGTTCCACCCTGGAGAGCAAGGA
CAGTGGAATTATAGCCACAATTACCAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTCTG
GAATGGAATAGAGATGGAAGCCTGAGGTTAGGGGTTCAGAAGGGAGTGCTTCATGACCGAAGGG
CTGATAACTGTTCCCCAGTGGCAGAAGAGGAGACTACTGGGTCGGCGGAGAGCGTACTGCCCAA
GGCGGAATCCTCAGCTGGAGATGGTCCGGTCCCTTATTCTCAGAGCTCAGGCTCGCTAATAATG
CCACGGCCCAACTCAGTTGCAGCGACAAGTTCTACCAAATTGGAAGACTTGAGCTATTTAGACG
GACAGAGAAATGCTCCTCTCCGGACGTCGATTAGATTGCCCTGGCACAGTACGGCTGGAGCACG
GTTTGCTCCCTACAAACCACAGGAGATTTTGTTGAAGCCCTTGCTTTTCGAAGTGCCAAGCATC
ACGACCGACTCTGTGTTTGTGGGAAGAGATTGGCTCTTTCAACAGATAGAAGAGAACTTGAGGA
ACACAGAACTGGCAGAAAACAGAGGAGCAGTGGTGGTGGGAAATGTAGGGTTTGGGAAGACAGC
CATCATTTCCAAGTTGGTGGCACTGAGCTGTCATGGAAGCCGCATGAGACAGATAGCATCCAGC
AGCCCCAGTTCATCTCTCAAAACCTCAGATCCCACCCATGACCTTCCCGGTACTCCGTTACTTT
CACCAAGTTCTTCCACAAGCGCTCTCGGTGCGGCCAGAACACCTCCCGGGCCCGGTACTGTTGA
CAGCCAGAGACCAAGAGAGGATGCGGTGAAATACCTCGCCTCTAAGGTGGTGGCCTACCATTAC
TGCCAGGCAGACAACACGTACACGTGTCTGGTACCTGAGTTTGTGCACAGCATTGCAGCTTTGC
TGTGCCGGTCCCACCAGCTGGCTGCCTACCGAGACCTTCTGATCAGGGAGCCCCAGCTACAGAG
CATGCTGAACCTCCGCTCCTGTGTGCAGGATCCTGTGGCTGCTTTCAAGAGGGGCATCCTGGAG
CCACTTACAAACCTAAGAAACGAGCAGAAAATTCCAGAAGAGGAATACATCATCTTGATAGATG
GCTTGAATGAAGCCGAATTTCATAAGCCTGATTACGGGGACACGCTGTCTTCATTCATTACCAA
AATCATTCCTAAGTTCCCCCCCTGGCTGAAGTTGATCGTGACCGTGAGAGCAGATTTTCAGGAA
ATCATCAGCACGCTGCCTTTTGTCAAGCTTTCCTTAGACGACTTCCCAGGCAACCAGGACATCC
ACAGCGACCTGCACGCATACGTCCAGCACAGGGTCCACAGCAGTCAGGACATCCTCAGCAACAT
CTCCCTGAACGGCAAGGCCGACGCCGCCCTCATCGGCAAAGTCAGCAGCCACCTGGTGCTGCGG
AGCCTTGGCTCCTACCTGTACCTCAAGCTCACGCTGGACCTCTTCCAGCGGGGCCACCTGGTCA
TAAAGAGCGCCAGCTACAAGGTGGTGCCTGTGTCTCTGTCTGAGCTCTATTTGCTGCAGTGCAA
CATGAAGTTCATGACCCAGTCTGCCTTCGACCGAGCCCTTCCCATTTTGAACGTGGCCCTCGCG
TCCCTCCACCCCATGACGGATGAGCAGATATTCCAGGCGATCAACGCCGGCCACATCCAAGGCG
AGCAGGGCTGGGAGGACTTTCAGCAGAGGATGGAGGCCCTCTCTTGCTTCCTCATTAAGAGGAG
AGACAAAACCCGGATGTTCTGCCACCCGTCCTTCAGAGAGTGGCTGGTGTGGAGAGCGGATGGC
GAAAGCACAGCCTTCCTGTGTGAGCCCAGGAATGGACACGCTCTACTGGCGTTCATGTTTTCTC
GACAGGAAAGCAAGCTGAACCGCCAGCAGACCGTGGAGCTTGGCCACCACATCCTGAAGGCACA
CATTTTCAAGGGCCTCAGTAAGAAGACTGGAGTCTCCTCAAGCCATCTGCAGGCCCTGTGGATT
GGCTACAGCACAGAGGGGCTGTCTGCTGCCCTGGCCTCTCTCAGGAATCTCTACACTCCCAATG
TAAAGGTGAGCCGGCTCCTGATCTTGGGAGGGGCCAACGTGAACTACAGGACAGAAGTGTTAAA
CAACGCCCCCATCCTGTGCGTCCAGTCTCACCTTGGCCATGAGGAAGTTGTCACGCTCCTGCTG
GAATTTGGCGCCTGCCTGGACGGGATGTCGGAGAATGGAATGAACGCACTGTGTTACGCAGCTG
CTGCCGGCCACATGAAGCTGGTGTGTCTGCTGACCAAGAAGGGGGCAAGGGTGGACCACTTGGA
TAAGAAGGGCCAGTGTGCACTCGTCCACAGCGCGCTGAGGGGCCACAGTGACATTCTCCAGTAC
CTACTGAACTGTGAGTGGTCGGCAGGCCCTCCGCAGCCTGGCACCCTGAGGAAGAGCCAAGCCC
TGCAGCAGGCACTGACAGCAGCCGCCAGCATGGGCCACAGCGCGGTCGTCCAGTCCTTGCTGGG
AATGGCAGAGGAACATGAAATCGAAGTCAATGGCACCGACACATTGTGGGGAGAAACAGCGCTG
ACTGCCGCGGCTGGGAGAGGAAAGCTGGAGATCTGCGAGCTTCTGCTGGAGCGTGGAGCGGCCG
TGTCTCGGGCCAACAGGAGAGGGGTACCCCCTCTGTTTTGTGCAGCCCGCCAGGGGCATTGGCA
GGTCGTGCAATTGCTTTTGGATCGGGGCTGTGACGTGAACCTGAATGACAAGCAGGGTCGGACA
CCTCTCATGGTGGCTGCCTGTGAAGGACACCTGAGCACCGTGGAATTTCTCCTCTCCAAAGGTG
CTGCTCTTTCTTCCCTGGACAAAGAGGGCCTGTCGGCATTGAGCTGGGCTTGTCTGAAGGGTCA
CAGGGCAGTGGTCCAGTATCTGGTCGAAGAAGGAGCAGAAATAGACCAAACAGACAAAAATGGC
CGTACTCCCTTGGACCTGGCCGCCTTCTATGGTGATGCAGAGACTGTGCTGTACCTGGTGGAGA
AAGGAGCCGTGATAGAACACGTGGACCACAGTGGGATGCGCCCCCTGGACAGAGCCATCGGTTG
CCGAAACACCGCTGTAGTGGTTACACTGCTGAGAAAAGGAGCCAAACTAGGAAATGCCGCTTGG
GCGATGGCCACTTCCAAACCTGATATTCTGATCATACTTTTACAGAAATTGATGGAGGAAGGAA
ATGTGATGTACAAGAAAGGGAAGATGAAGGAGGCAGCCCAGAGGTACCAGTATGCCTTACGGAA
GTTCCCTCGGGAAGGACTCGGAGAAGACATGAGGCCATTCAATGAGCTGAGAGTCTCCCTCTAT
CTCAACCTGTCGAGATGCCGAAGGAAAACCAATGACTTTGGCTTGGCAGAAGAATTTGCTTCAA
AGGCTCTGGAACTGAAACCGAAATCCTATGAAGCCTTTTATGCCCGGGCAAGAGCAAAAAGGAA
CAGCAGGCAGTTCCTGGCTGCTCTGGCTGACCTGCAGGAGGCTGTGAAACTCTGTCCCACCAAT
CAGGAAATCAAGCGGCTTTTGGCCCGTGTTGAAGAAGAGTGTAAACAACTCCAGAGGAACCAGC
AGCAGAAACAGCAGGCACCCCTGCCGGCTCCACCCAATGACTCTGATAATGATGAGGAGGCCCC
AGCCTCTAGTCTAAAAGACCACTTCCCCATTGAGGAGGCAGAGGAGGAAGACACCTCTTCACAA
GAAGAGTCCATTTCCCCGACTCCCAGATCCCAGCCACCACCATCTGTCCCTTCCCCATATATCC
GCAACCTTCAAGAGGGATTACAGTCCAAAGGCAGGCCAGCGTCCCCACAGAGCAGGGCAGGAAT
CAGTAAGTCCCTGAGAGAGACTGTAGCTCAGCCAGGTTTGGTTATGCAGCCGACCAAACAGGCG
CAGATCGTGAAGACCAATCAACATCTAGGTTCTGGGCAATCCAGCATGAGGAACAGTAACACCA
AAGTACAGGTCTCTTCTCAGAACCCTCCCCCAAGCCCAATGCCAGGTAGAGTATCTGCAGCCCC
TGCCGTGAGCAGAAACCAGCATTTAGAGGGAACGGGTCCCTTCAGTACAGGAACTGGTTGTGGT
CACTTCGGGGATCGGCTGGGCCCCAGCCAGAGCCTCCAGCTGCAGCGCGGTGAGAGCGGCACTG
CGTATCCTCTCCCGAGCAAAGTCAAAGCAGCCGAGAGGCTCCTGGCTCACGCCTCTGTGGCTGT
GGACATGGCCCCTCCGAGCCAGGGTGGACCAGTGAGCTGCAGCGATGTGCGGCACCCAGCTTCC
CTCAGCAGCTCCGGCTCGTCCGGCTCTCCATCCAGCAGCGTAAAGATGTCGAGCTCCACCAGTA
GCTTGACTTCAAGCAGTAGCGTTTCAGACGGATTCAAGGCCCAAGGACCAGACTCTAGAATCAG
AGACAGAGGTACAACTCAGGTGCAGGGTGGCACTGCCGAACACAGGCCCCGCAACACTCCATTC
ATGGGCATCATGGACAAGACCGCCAGGTTCCAGCAGCAAGTCAACCCTCCGAGCCGCTCCTGGC
ACTGCCCGGTGACAGAGGGACTACTGACAAACACAGCCACTGCAGCCGGCCTGCAGACTAACTC
TGAGAAACCCGCCCTCAAGCCCGGAGGATATTGTAGCCAAGCCAAGCCGTGTTCAGTTCCCCCC
CTGGGCATGGGTGTCCACAATGGGGCTCAGGTGAAGGAGCTGGAAGAAAATAAGTGCCAAATTC
CAGCCCTCTGTCAAGACAACAGGAAAACTAAGGGTGTGCCCCATCTCTACCCGGAAGGCGTCTC
TAAGCAGCCGCTTCATGTCAGTACGGAAGCCCACAGGAGCCACCTCACTTCAGCGAAACCAAAG
CGATCGTTCATAGAGTCCAATGTGTGAGCCTTAAGCAACCCCTGTGTAGAATCTGGAGTGCAGT
CTGTTGGCTCGTGGTGATAAATAATGTCTTTTTTTCATAATAAAAATTACCTGTTAGCCATATT
TTCCACCTCTTGGGTGGATCTGATGCCATTGACATATTAAAACTGTAGGATAAAACTATAGTTA
AGTAGCTAGAAATCAGCCATAAACAGAAATACTAAACAGCATTGAAAACCGTTGTCAGCTTTTA
TCTGGCGATTTAAAGGCTGCCAAGAAGACATCAACCAATGCCGTTCTCTTAGGAAATCATTTGG
TTTGCTAAGTGTAAGCGGAAAAAAAGAGAAGGGGGGGGGGGGAAGTCCACTGGTAAAAGTTTTT
TAACTCCTGACGTCATAATATCTCGAAGTGTATTCTGGAAAAGATTGGGGGCGGGGATTTTTTT
AAGTTCCAGATTCCTTAAGTCAAACCTGTCCTTACATATGTGTGAAACTTGCAACCTGAGTGGT
ATCTAGCTGGATGTCAATGTGACTTTTTTTCTGTCAGTGAAATACAAGGGCACCCATGTATCAT
TCCCGTCATGGTGGTTACGCAAGGTGACCAAACACCGACTTCCATGATATGGTCATCTGTAGAG
TATTTTTATTTTATAGCCCCCTTTTTGGAACTATATTTATGCTTCACAGTGTTACTGAGAAGAG
GGAACAGGCTAGCTAGAATTTTGACTGGTGTCCAGGTCAGAGTTGGGCAAAAGTCCCAAAAAGG
GCACTCTTAGTGGCGGCAACAAATTAGCCCTAACTGGTTCCAAAAGTGTTCTGGACAGTGACCG
TCCCCGAAACGAGCCTCCAGTGTCCTGTAGGGACAGTGGTCAGACAGGATCCTTGAGGTCTGGG
TGATGGTTTTGTTTCCTTACGCAGCCCGCTGTTTCATAGTCACTTGTTATGTATGTATGTGTAT
ATATATGTATATATATAGCCCATTTTATTCAGGCTTGTAAATAGAACTCAAAGGAAGCTAATCT
GAAGACACACAGCAGGACCCCGCCTGCCATCTCTCCGCATGTTCTTTGTGAGCGCTATGCTGGT
TACCACACAGAACGATGTGTTATCATGGCTTGTCACAGAATACCCGCAATGGCACTTTATCTCA
TTTGTACGGATGTACAGACACCTCTGAGGTGCTACTTAAATCCAGGCTGACATATTTTTCATCT
GTAAAGATAAGGTACAAGAATGAACCTTGGTTTGAGGTATTTTTATATGAAAATGGTGTTATTT
GGAAGATGTTCAAATGCTGGTTTGAGAGAGGTGGGGGGGCAGTATTTTATATGTCGAGATGTGA
AATGTATTTTCTAGATCGGGGAGAAGGAAGTTCTATATTTGCAGAATGTTTTAGACATGAGTAT
CCACGATGCTCCTCTGAACATCATTAAGGTTTTGTATGGAAAGGAACCTTGCAGCGTCATTCAG
TGTGTCTGTTCCTGTGTGTTGTATGCTTTGTACAAAAAGCTAGGTCGTTGTTCTAAGCTCTCTC
TGAGTTCCGCTTTAACTATACGGCTTATTTATTGTTTTCTTTAATATTTGTGAACGTCTTACTC
TTTGGTTATGTAGTTTGTTTCTGCACAACTACTGTACTTTTCCACACAGAATAAAGACCATTAC
TTCA

hide sequence

RefSeq Acc Id:

XM_039104830 ⟹ XP_038960758

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,566,318 - 64,741,826 (+)	NCBI
mRatBN7.2	3	44,158,105 - 44,335,478 (+)	NCBI

RefSeq Acc Id:

XM_063283615 ⟹ XP_063139685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,508,037 - 64,741,826 (+)	NCBI

RefSeq Acc Id:

XM_063283616 ⟹ XP_063139686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,566,319 - 64,741,826 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001002854	(Get FASTA)	NCBI Sequence Viewer
	NP_001418598	(Get FASTA)	NCBI Sequence Viewer
	NP_001418599	(Get FASTA)	NCBI Sequence Viewer
	XP_006234266	(Get FASTA)	NCBI Sequence Viewer
	XP_017447170	(Get FASTA)	NCBI Sequence Viewer
	XP_038960758	(Get FASTA)	NCBI Sequence Viewer
	XP_063139685	(Get FASTA)	NCBI Sequence Viewer
	XP_063139686	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAD27523	(Get FASTA)	NCBI Sequence Viewer
	EDM00393	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033136
	ENSRNOP00000088260
GenBank Protein	Q6F6B3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001002854 ⟸ NM_001002854

- UniProtKB:

Q6F6B3 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MLKAVLKKSREGVKGSKKEAGGDFGSETPTLSSSGDSPVNSLSTTEDTYRVSLAKGVSMSLPSS
PLLPRQSHLTQSRANKKSPGPVRKPKYVESPRVPGDPVMIPFREGSKPAEPIETEAKVDNEPSC
SPAAQELLTRLGFLLGEGIPSATHITIEDKNEAMCTALSQGISPCSTLTSSTASPSTDSPCSTL
NSCVSKTAANKSPCETISSPSSTLESKDSGIIATITSSSENDDRSGSSLEWNRDGSLRLGVQKG
VLHDRRLDNCSPVAEEETTGSAESVLPKAESSAGDGPVPYSQSSGSLIMPRPNSVAATSSTKLE
DLSYLDGQRNAPLRTSIRLPWHSTAGARFAPYKPQEILLKPLLFEVPSITTDSVFVGRDWLFQQ
IEENLRNTELAENRGAVVVGNVGFGKTAIISKLVALSCHGSRMRQVASSSPSSSLKTSDPTHDL
PGTPLLSPSSSTSALSAARTPPGPGTVDSQRPREDAVKYLASRVVAYHYCQADNTYTCLVPEFV
HSIATLLCRSHQLAAYRDLLIREPQLQSMLNLRSCVQDPVAAFKRGILEPLTNLRNEQKIPEEE
YIILIDGLNEAEFHKPDHGDTLSSFITKIIPKFPPWLKLIVTVRADFQEIISTLPFVKLSLDDF
PGNQDIHSDLHAYVQHRVHSSQDILSNISLNGKADAALIGKVSSRLVLRNLGSYLYLKLTLDLF
QRGHLVIKSASYKVVPVSLSELYLLQCNMKFMTQSAFDRALPILNVALASLHPMTDEQIFQAIN
AGHIQGEQGWEDFQQKMEALSCFLIKKRDKTRMFCHPSFREWLVWRADGESTAFLCEPRNGHAL
LAFMFSRQESKLNRQQTVELGHHILKAHIFKGLSKKTGVSSSHPQALWIGYSTEGLSAALASLR
NLYTPNVKVSRLLILGGANVNYRTEVLNNAPILCVQSHLGHEEVVTLLLEFGACLDGMSENGMN
ALCYAAAAGHMKLVCLLTKKGARVDHLDKKGQCALVHSALRGHSDILQYLLNCEWSAGPPQPGT
LRKSQALQQALTAAASMGHSAVVQSLLGMAEEHEIEVNGTDTLWGETALTAAAGRGKLEICELL
LERGAAVSRANRRGVPPLFCAARQGHWQVVQLLLDRGCDVNPNDKQGRTPLMVAACEGHLSTVE
FLLSKGAALSSLDKEGLSALSWACLKGHRAVVQYLVEEGAEIDQTDKNGRTPLDLAAFYGDAET
VLYLVEKGAVIEHVDHSGMRPLDRAIGCRNTAVVVTLLRKGAKLGNAAWAMATFKPDILIILLQ
KLMEEGNVMYKKGKMKEAAQRYQYALRKFPREGPGEDMRPFNELRVSLYLNLSRCRRKTNDFGL
AEEFASKALELKPKSYEAFYARARAKRNSRQFLAALADLQEAVKLCPTNQEIKRLLARVEEECK
QLQRNQQQKQQAPLPAPPNDSDNDEEAPASSLKDHFPIEEAEEEDTSSQEESISPTPRSQPPPS
VPSPYIRNLQEGLQSKGRPASPQSWAGISKSLRETVAQPGLVMQPTKQAQIVKTNQHLGSGQSS
MRNSNTKVQVSSQNPPPSPMPGRVSAAPAVSRNQHLEGTGPFSTGTGCGHFGDRLGPSQSLQLQ
RGESGTAYPLPSKVKAAERLLAHASVAVDMALPSQGGPVSCSDVRHPASLSSSGSSGSPSSSVK
MSSSTSSLTSSSSVSDGFKAQGPDCRIRDRGTTQVQGGTAEHRPRNTPFMGIMDKIARFQQQVN
PPSRSWHCPVTEGLLTNTATAAGLQTNSEKPALKPGGYCSQAKPCSVPPLGMGVHNGAQVKELE
ENKCQVPALCQDNRKTKGVPHLYPEGVSKQPLHVSTEAHRSHLTSAKPKRSFIESNV

hide sequence

RefSeq Acc Id:	XP_006234266 ⟸ XM_006234204
- Peptide Label:	isoform X1
- UniProtKB:	Q6F6B3 (UniProtKB/Swiss-Prot), G3V917 (UniProtKB/TrEMBL), A6JF67 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLKAVLKKSREGVKGSKKEAGGDFGSETPTLSSSGDSPVNSLSTTEDTYRVSLAKGVSMSLPSS PLLPRQSHLTQSRANKKSPGPVRKPKYVESPRVPGDPVMIPFREGSKPAEPIETEAKVDNEPSC SPAAQELLTRLGFLLGEGIPSATHITIEDKNEAMCTALSQGISPCSTLTSSTASPSTDSPCSTL NSCVSKTAANKSPCETISSPSSTLESKDSGIIATITSSSENDDRSGSSLEWNRDGSLRLGVQKG VLHDRRADNCSPVAEEETTGSAESVLPKAESSAGDGPVPYSQSSGSLIMPRPNSVAATSSTKLE DLSYLDGQRNAPLRTSIRLPWHSTAGGRAQEVKARFAPYKPQEILLKPLLFEVPSITTDSVFVG RDWLFQQIEENLRNTELAENRGAVVVGNVGFGKTAIISKLVALSCHGSRMRQIASSSPSSSLKT SDPTHDLPGTPLLSPSSSTSALGAARTPPGPGTVDSQRPREDAVKYLASKVVAYHYCQADNTYT CLVPEFVHSIAALLCRSHQLAAYRDLLIREPQLQSMLNLRSCVQDPVAAFKRGILEPLTNLRNE QKIPEEEYIILIDGLNEAEFHKPDYGDTLSSFITKIIPKFPPWLKLIVTVRADFQEIISTLPFV KLSLDDFPGNQDIHSDLHAYVQHRVHSSQDILSNISLNGKADAALIGKVSSHLVLRSLGSYLYL KLTLDLFQRGHLVIKSASYKVVPVSLSELYLLQCNMKFMTQSAFDRALPILNVALASLHPMTDE QIFQAINAGHIQGEQGWEDFQQRMEALSCFLIKRRDKTRMFCHPSFREWLVWRADGESTAFLCE PRNGHALLAFMFSRQESKLNRQQTVELGHHILKAHIFKGLSKKTGVSSSHLQALWIGYSTEGLS AALASLRNLYTPNVKVSRLLILGGANVNYRTEVLNNAPILCVQSHLGHEEVVTLLLEFGACLDG MSENGMNALCYAAAAGHMKLVCLLTKKGARVDHLDKKGQCALVHSALRGHSDILQYLLNCEWSA GPPQPGTLRKSQALQQALTAAASMGHSAVVQSLLGMAEEHEIEVNGTDTLWGETALTAAAGRGK LEICELLLERGAAVSRANRRGVPPLFCAARQGHWQVVQLLLDRGCDVNLNDKQGRTPLMVAACE GHLSTVEFLLSKGAALSSLDKEGLSALSWACLKGHRAVVQYLVEEGAEIDQTDKNGRTPLDLAA FYGDAETVLYLVEKGAVIEHVDHSGMRPLDRAIGCRNTAVVVTLLRKGAKLGNAAWAMATSKPD ILIILLQKLMEEGNVMYKKGKMKEAAQRYQYALRKFPREGLGEDMRPFNELRVSLYLNLSRCRR KTNDFGLAEEFASKALELKPKSYEAFYARARAKRNSRQFLAALADLQEAVKLCPTNQEIKRLLA RVEEECKQLQRNQQQKQQAPLPAPPNDSDNDEEAPASSLKDHFPIEEAEEEDTSSQEESISPTP RSQPPPSVPSPYIRNLQEGLQSKGRPASPQSRAGISKSLRETVAQPGLVMQPTKQAQIVKTNQH LGSGQSSMRNSNTKVQVSSQNPPPSPMPGRVSAAPAVSRNQHLEGTGPFSTGTGCGHFGDRLGP SQSLQLQRGESGTAYPLPSKVKAAERLLAHASVAVDMAPPSQGGPVSCSDVRHPASLSSSGSSG SPSSSVKMSSSTSSLTSSSSVSDGFKAQGPDSRIRDRGTTQVQGGTAEHRPRNTPFMGIMDKTA RFQQQVNPPSRSWHCPVTEGLLTNTATAAGLQTNSEKPALKPGGYCSQAKPCSVPPLGMGVHNG AQVKELEENKCQIPALCQDNRKTKGVPHLYPEGVSKQPLHVSTEAHRSHLTSAKPKRSFIESNV hide sequence

RefSeq Acc Id:

XP_017447170 ⟸ XM_017591681

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLKAVLKKSREGVKGSKKEAGGDFGSETPTLSSSGDSPVNSLSTTEDTYRVSLAKGVSMSLPSS
PLLPRQSHLTQSRANKKSPGPVRKPKYVESPRVPGDPVMIPFREGSKPAEPIETEAKVDNEPSC
SPAAQELLTRLGFLLGEGIPSATHITIEDKNEAMCTALSQGISPCSTLTSSTASPSTDSPCSTL
NSCVSKTAANKSPCETISSPSSTLESKDSGIIATITSSSENDDRSGSSLEWNRDGSLRLGVQKG
VLHDRRADNCSPVAEEETTGSAESVLPKAESSAGDGPVPYSQSSGSLIMPRPNSVAATSSTKLE
DLSYLDGQRNAPLRTSIRLPWHSTAGARFAPYKPQEILLKPLLFEVPSITTDSVFVGRDWLFQQ
IEENLRNTELAENRGAVVVGNVGFGKTAIISKLVALSCHGSRMRQIASSSPSSSLKTSDPTHDL
PGTPLLSPSSSTSALGAARTPPGPGTVDSQRPREDAVKYLASKVVAYHYCQADNTYTCLVPEFV
HSIAALLCRSHQLAAYRDLLIREPQLQSMLNLRSCVQDPVAAFKRGILEPLTNLRNEQKIPEEE
YIILIDGLNEAEFHKPDYGDTLSSFITKIIPKFPPWLKLIVTVRADFQEIISTLPFVKLSLDDF
PGNQDIHSDLHAYVQHRVHSSQDILSNISLNGKADAALIGKVSSHLVLRSLGSYLYLKLTLDLF
QRGHLVIKSASYKVVPVSLSELYLLQCNMKFMTQSAFDRALPILNVALASLHPMTDEQIFQAIN
AGHIQGEQGWEDFQQRMEALSCFLIKRRDKTRMFCHPSFREWLVWRADGESTAFLCEPRNGHAL
LAFMFSRQESKLNRQQTVELGHHILKAHIFKGLSKKTGVSSSHLQALWIGYSTEGLSAALASLR
NLYTPNVKVSRLLILGGANVNYRTEVLNNAPILCVQSHLGHEEVVTLLLEFGACLDGMSENGMN
ALCYAAAAGHMKLVCLLTKKGARVDHLDKKGQCALVHSALRGHSDILQYLLNCEWSAGPPQPGT
LRKSQALQQALTAAASMGHSAVVQSLLGMAEEHEIEVNGTDTLWGETALTAAAGRGKLEICELL
LERGAAVSRANRRGVPPLFCAARQGHWQVVQLLLDRGCDVNLNDKQGRTPLMVAACEGHLSTVE
FLLSKGAALSSLDKEGLSALSWACLKGHRAVVQYLVEEGAEIDQTDKNGRTPLDLAAFYGDAET
VLYLVEKGAVIEHVDHSGMRPLDRAIGCRNTAVVVTLLRKGAKLGNAAWAMATSKPDILIILLQ
KLMEEGNVMYKKGKMKEAAQRYQYALRKFPREGLGEDMRPFNELRVSLYLNLSRCRRKTNDFGL
AEEFASKALELKPKSYEAFYARARAKRNSRQFLAALADLQEAVKLCPTNQEIKRLLARVEEECK
QLQRNQQQKQQAPLPAPPNDSDNDEEAPASSLKDHFPIEEAEEEDTSSQEESISPTPRSQPPPS
VPSPYIRNLQEGLQSKGRPASPQSRAGISKSLRETVAQPGLVMQPTKQAQIVKTNQHLGSGQSS
MRNSNTKVQVSSQNPPPSPMPGRVSAAPAVSRNQHLEGTGPFSTGTGCGHFGDRLGPSQSLQLQ
RGESGTAYPLPSKVKAAERLLAHASVAVDMAPPSQGGPVSCSDVRHPASLSSSGSSGSPSSSVK
MSSSTSSLTSSSSVSDGFKAQGPDSRIRDRGTTQVQGGTAEHRPRNTPFMGIMDKTARFQQQVN
PPSRSWHCPVTEGLLTNTATAAGLQTNSEKPALKPGGYCSQAKPCSVPPLGMGVHNGAQVKELE
ENKCQIPALCQDNRKTKGVPHLYPEGVSKQPLHVSTEAHRSHLTSAKPKRSFIESNV

hide sequence

Ensembl Acc Id:

ENSRNOP00000033136 ⟸ ENSRNOT00000038983

RefSeq Acc Id:	XP_038960758 ⟸ XM_039104830
- Peptide Label:	isoform X1
- UniProtKB:	Q6F6B3 (UniProtKB/Swiss-Prot), G3V917 (UniProtKB/TrEMBL), A6JF67 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000088260 ⟸ ENSRNOT00000115662

RefSeq Acc Id:	XP_063139685 ⟸ XM_063283615
- Peptide Label:	isoform X1
- UniProtKB:	Q6F6B3 (UniProtKB/Swiss-Prot), A6JF67 (UniProtKB/TrEMBL), G3V917 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139686 ⟸ XM_063283616
- Peptide Label:	isoform X2
- UniProtKB:	Q6F6B3 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000102096 ⟸ ENSRNOT00000165443

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6F6B3-F1-model_v2	AlphaFold	Q6F6B3	1-1849	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692086

Promoter ID:

EPDNEW_R2611

Type:

initiation region

Name:

Tanc1_1

Description:

tetratricopeptide repeat, ankyrin repeat and coiled-coil containing1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	45,683,955 - 45,684,015	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1302949	AgrOrtholog
BioCyc Gene	G2FUF-49637	BioCyc
Ensembl Genes	ENSRNOG00000025394	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000038983	ENTREZGENE
	ENSRNOT00000115662	ENTREZGENE
Gene3D-CATH	1.25.40.10	UniProtKB/Swiss-Prot
	1.25.40.20	UniProtKB/Swiss-Prot
InterPro	Ankyrin_rpt	UniProtKB/Swiss-Prot
	Ankyrin_rpt-contain_sf	UniProtKB/Swiss-Prot
	Dendritic_Spine_Reg/Scaffold	UniProtKB/Swiss-Prot
	TPR-like_helical_dom_sf	UniProtKB/Swiss-Prot
	TPR_repeat	UniProtKB/Swiss-Prot
KEGG Report	rno:311055	UniProtKB/Swiss-Prot
NCBI Gene	311055	ENTREZGENE
PANTHER	PROTEIN TANC1	UniProtKB/Swiss-Prot
	ROLLING PEBBLES, ISOFORM B	UniProtKB/Swiss-Prot
Pfam	Ank	UniProtKB/Swiss-Prot
	Ank_2	UniProtKB/Swiss-Prot
	Ank_4	UniProtKB/Swiss-Prot
PhenoGen	Tanc1	PhenoGen
PROSITE	ANK_REP_REGION	UniProtKB/Swiss-Prot
	ANK_REPEAT	UniProtKB/Swiss-Prot
	TPR	UniProtKB/Swiss-Prot
	TPR_REGION	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000025394	RatGTEx
SMART	ANK	UniProtKB/Swiss-Prot
	TPR	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48403	UniProtKB/Swiss-Prot
	SSF48452	UniProtKB/Swiss-Prot
UniProt	A0A8I6A9F6_RAT	UniProtKB/TrEMBL
	A0ABK0L193_RAT	UniProtKB/TrEMBL
	A6JF67	ENTREZGENE, UniProtKB/TrEMBL
	G3V917	ENTREZGENE, UniProtKB/TrEMBL
	Q6F6B3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Tanc1	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	Tanc	TPR domain, ankyrin-repeat and coiled-coil-containing	Symbol and Name updated	1299863	APPROVED
2005-09-30	Tanc				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar