Rpl31 (ribosomal protein L31) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rpl31 (ribosomal protein L31) Rattus norvegicus
Analyze
Symbol: Rpl31
Name: ribosomal protein L31
RGD ID: 621202
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Located in nucleoplasm. Part of cytosolic large ribosomal subunit. Orthologous to human RPL31 (ribosomal protein L31); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L31; large ribosomal subunit protein eL31; MGC72834
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Rpl31-ps10   Rpl31-ps13  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8949,143,044 - 49,147,155 (+)NCBIGRCr8
mRatBN7.2941,647,397 - 41,651,441 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl941,647,426 - 41,662,129 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx950,143,377 - 50,147,422 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0955,266,125 - 55,270,170 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0953,548,123 - 53,552,167 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0946,086,959 - 46,090,444 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl946,086,984 - 46,090,997 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0945,774,871 - 45,778,356 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4938,439,431 - 38,442,916 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1938,440,871 - 38,444,883 (+)NCBI
Celera939,396,969 - 39,400,454 (+)NCBICelera
Cytogenetic Map9q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
3',5'-cyclic UMP  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3'-diindolylmethane  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP)
CGP 52608  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
curcumin  (ISO)
cylindrospermopsin  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
flavonoids  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fonofos  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
glyphosate  (ISO)
hydralazine  (ISO)
indole-3-methanol  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
p-menthan-3-ol  (ISO)
panobinostat  (ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
pyrogallol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
stigmasterol  (ISO)
terbufos  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. Sequence requirement for nucleolar localization of rat ribosomal protein L31. Quaye IK, etal., Eur J Cell Biol. 1996 Feb;69(2):151-5.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. Nucleotide sequence of cloned cDNA specific for rat ribosomal protein L31. Tanaka T, etal., Eur J Biochem 1987 Jan 2;162(1):45-8.
9. Isolation of eukaryotic ribosomal proteins. Purification and characterization of 60 S ribosomal subunit proteins L3, L6, L7', L8, L10, L15, L17, L18, L19, L23', L25, L27', L28, L29, L31, L32, L34, L35, L36, L36', and L37'. Tsurugi K, etal., J Biol Chem. 1977 Jun 10;252(11):3961-9.
Additional References at PubMed
PMID:12477932   PMID:12962325   PMID:15489334   PMID:16452087   PMID:19946888   PMID:20458337   PMID:21423176   PMID:22658674   PMID:23376485   PMID:24625528   PMID:24930395   PMID:25957688  
PMID:35352799  


Genomics

Comparative Map Data
Rpl31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8949,143,044 - 49,147,155 (+)NCBIGRCr8
mRatBN7.2941,647,397 - 41,651,441 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl941,647,426 - 41,662,129 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx950,143,377 - 50,147,422 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0955,266,125 - 55,270,170 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0953,548,123 - 53,552,167 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0946,086,959 - 46,090,444 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl946,086,984 - 46,090,997 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0945,774,871 - 45,778,356 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4938,439,431 - 38,442,916 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1938,440,871 - 38,444,883 (+)NCBI
Celera939,396,969 - 39,400,454 (+)NCBICelera
Cytogenetic Map9q22NCBI
RPL31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382101,002,289 - 101,019,724 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2101,002,229 - 101,024,032 (+)EnsemblGRCh38hg38GRCh38
GRCh372101,618,751 - 101,636,186 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362100,985,123 - 101,002,587 (+)NCBINCBI36Build 36hg18NCBI36
Build 342101,077,268 - 101,081,398NCBI
Celera295,822,605 - 95,840,060 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef295,382,734 - 95,400,192 (+)NCBIHuRef
CHM1_12101,623,013 - 101,640,477 (+)NCBICHM1_1
T2T-CHM13v2.02101,460,986 - 101,478,421 (+)NCBIT2T-CHM13v2.0
Rpl31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39139,406,987 - 39,410,992 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl139,406,923 - 39,410,992 (+)EnsemblGRCm39 Ensembl
GRCm38139,367,851 - 39,371,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl139,367,842 - 39,371,911 (+)EnsemblGRCm38mm10GRCm38
MGSCv37139,424,696 - 39,428,756 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36139,312,465 - 39,316,453 (+)NCBIMGSCv36mm8
Celera1592,888,049 - 92,888,542 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map118.3NCBI
Rpl31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554706,912,537 - 6,916,232 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554706,912,109 - 6,916,232 (+)NCBIChiLan1.0ChiLan1.0
RPL31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,206,182 - 27,225,988 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A27,208,963 - 27,226,498 (-)NCBINHGRI_mPanPan1
PanPan1.12A101,978,288 - 101,996,064 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A101,978,759 - 101,996,058 (+)Ensemblpanpan1.1panPan2
RPL31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13229,400,195 - 29,400,624 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3229,400,216 - 29,400,593 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1041,758,134 - 41,767,485 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01042,700,902 - 42,710,022 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1042,693,031 - 42,709,603 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11042,412,727 - 42,421,780 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01042,695,934 - 42,705,287 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01042,887,691 - 42,896,808 (-)NCBIUU_Cfam_GSD_1.0
Rpl31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629286,478,127 - 86,482,666 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493666186,547 - 91,380 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493666186,834 - 91,309 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl353,281,339 - 53,295,304 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1353,289,993 - 53,295,387 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2355,836,226 - 55,841,636 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,710,622 - 4,714,974 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041172,330,229 - 172,335,147 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247495,795,872 - 5,800,410 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247495,795,374 - 5,800,410 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpl31
19 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:96
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000033733
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat

Markers in Region
BE118306  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2941,651,203 - 41,651,378 (+)MAPPERmRatBN7.2
Rnor_6.0946,090,762 - 46,090,936NCBIRnor6.0
Rnor_5.0945,778,674 - 45,778,848UniSTSRnor5.0
RGSC_v3.4938,443,234 - 38,443,408UniSTSRGSC3.4
Celera939,400,772 - 39,400,946UniSTS
RH 3.4 Map9386.4UniSTS
Cytogenetic Map9q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 6 6 6 4 10 13
Medium 3 41 51 35 19 35 8 11 70 25 28 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC062228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X04809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000033733   ⟹   ENSRNOP00000031078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl941,647,426 - 41,651,439 (+)Ensembl
Rnor_6.0 Ensembl946,086,984 - 46,090,997 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106983   ⟹   ENSRNOP00000093678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl941,647,426 - 41,662,129 (+)Ensembl
RefSeq Acc Id: NM_022506   ⟹   NP_071951
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8949,143,111 - 49,147,155 (+)NCBI
mRatBN7.2941,647,397 - 41,651,441 (+)NCBI
Rnor_6.0946,086,959 - 46,090,444 (+)NCBI
Rnor_5.0945,774,871 - 45,778,356 (+)NCBI
RGSC_v3.4938,439,431 - 38,442,916 (+)RGD
Celera939,396,969 - 39,400,454 (+)RGD
Sequence:
RefSeq Acc Id: XM_063267673   ⟹   XP_063123743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8949,143,044 - 49,146,601 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_071951   ⟸   NM_022506
- UniProtKB: P62902 (UniProtKB/Swiss-Prot),   A6INL0 (UniProtKB/TrEMBL),   D3ZU04 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000031078   ⟸   ENSRNOT00000033733
RefSeq Acc Id: ENSRNOP00000093678   ⟸   ENSRNOT00000106983
RefSeq Acc Id: XP_063123743   ⟸   XM_063267673
- Peptide Label: isoform X1
- UniProtKB: A6INL2 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62902-F1-model_v2 AlphaFold P62902 1-125 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696624
Promoter ID:EPDNEW_R7148
Type:initiation region
Name:Rpl31_1
Description:ribosomal protein L31
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0946,086,960 - 46,087,020EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621202 AgrOrtholog
BioCyc Gene G2FUF-27750 BioCyc
Ensembl Genes ENSRNOG00000013508 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000030296 UniProtKB/TrEMBL
  ENSRNOG00055020139 UniProtKB/Swiss-Prot
  ENSRNOG00060022620 UniProtKB/Swiss-Prot
  ENSRNOG00065030502 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000033733 ENTREZGENE
  ENSRNOT00000033733.6 UniProtKB/Swiss-Prot
  ENSRNOT00000042885.2 UniProtKB/TrEMBL
  ENSRNOT00000106983.1 UniProtKB/TrEMBL
  ENSRNOT00055034387 UniProtKB/Swiss-Prot
  ENSRNOT00060039252 UniProtKB/Swiss-Prot
  ENSRNOT00065052581 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.440.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6921741 IMAGE-MGC_LOAD
InterPro Ribosomal_L31e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L31e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L31e_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64298 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72834 IMAGE-MGC_LOAD
NCBI Gene 64298 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L31 UniProtKB/Swiss-Prot
  60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  PTHR10956 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L31e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl31 PhenoGen
PROSITE RIBOSOMAL_L31E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013508 RatGTEx
  ENSRNOG00000030296 RatGTEx
  ENSRNOG00055020139 RatGTEx
  ENSRNOG00060022620 RatGTEx
  ENSRNOG00065030502 RatGTEx
SMART Ribosomal_L31e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54575 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AI09_RAT UniProtKB/TrEMBL
  A6INL0 ENTREZGENE, UniProtKB/TrEMBL
  A6INL2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZU04 ENTREZGENE, UniProtKB/TrEMBL
  P62902 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P12947 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Rpl31  ribosomal protein L31      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rpl31  ribosomal protein L31      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 124 amino acids with a relative molecular mass of 14,331 634028