Rpl23 (ribosomal protein L23) - Rat Genome Database

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Gene: Rpl23 (ribosomal protein L23) Rattus norvegicus
Analyze
Symbol: Rpl23
Name: ribosomal protein L23
RGD ID: 62067
Description: Predicted to enable several functions, including transcription coactivator binding activity; ubiquitin ligase inhibitor activity; and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in several processes, including cellular response to actinomycin D; negative regulation of nitrogen compound metabolic process; and protein stabilization. Predicted to act upstream of with a positive effect on G1 to G0 transition and regulation of G1 to G0 transition. Located in ribosome. Part of cytosolic large ribosomal subunit. Is active in postsynaptic density. Orthologous to human RPL23 (ribosomal protein L23); PARTICIPATES IN p53 signaling pathway; ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L23; large ribosomal subunit protein uL14; MGC72962; RL23a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81083,268,223 - 83,272,184 (-)NCBIGRCr8
mRatBN7.21082,771,878 - 82,775,840 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,771,538 - 82,775,870 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1087,720,146 - 87,724,104 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01087,218,235 - 87,222,193 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01082,610,820 - 82,614,779 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01085,721,398 - 85,725,359 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,721,394 - 85,725,429 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01085,510,909 - 85,514,870 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,527,589 - 86,531,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1081,527,282 - 81,531,200 (-)NCBICelera
Cytogenetic Map10q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-nitrofluorene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
5-fluorouracil  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clofibrate  (EXP)
clofibric acid  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
disulfiram  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hydrogen peroxide  (ISO)
indometacin  (EXP)
ivermectin  (ISO)
L-ethionine  (EXP)
lead(0)  (ISO)
melatonin  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (EXP)
nefazodone  (EXP)
nickel sulfate  (ISO)
nimesulide  (EXP)
omeprazole  (EXP)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
pyrogallol  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
tetracycline  (ISO)
thapsigargin  (EXP)
thioacetamide  (EXP)
tolcapone  (EXP)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein L23. Chan YL, etal., Biochem Biophys Res Commun 1991 Aug 15;178(3):1153-9.
3. Relative and absolute quantification of postsynaptic density proteome isolated from rat forebrain and cerebellum. Cheng D, etal., Mol Cell Proteomics. 2006 Jun;5(6):1158-70. doi: 10.1074/mcp.D500009-MCP200. Epub 2006 Feb 28.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Information Derived from GenBank Report RGD, Sept. 2003
13. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
14. Identification of neighboring protein pairs in rat liver 60S ribosomal subunits cross-linked with dimethyl suberimidate or dimethyl 3,3'-dithiobispropionimidate. Uchiumi T, etal., J Biochem. 1980 Oct;88(4):1033-44.
Additional References at PubMed
PMID:11809816   PMID:12477932   PMID:12962325   PMID:15314173   PMID:15489334   PMID:16854843   PMID:19160485   PMID:19946888   PMID:20458337   PMID:21423176   PMID:22658674   PMID:23106098  
PMID:23376485   PMID:23979707   PMID:24625528   PMID:24930395   PMID:25763846  


Genomics

Comparative Map Data
Rpl23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81083,268,223 - 83,272,184 (-)NCBIGRCr8
mRatBN7.21082,771,878 - 82,775,840 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,771,538 - 82,775,870 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1087,720,146 - 87,724,104 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01087,218,235 - 87,222,193 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01082,610,820 - 82,614,779 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01085,721,398 - 85,725,359 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,721,394 - 85,725,429 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01085,510,909 - 85,514,870 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,527,589 - 86,531,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1081,527,282 - 81,531,200 (-)NCBICelera
Cytogenetic Map10q31NCBI
RPL23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381738,847,860 - 38,853,721 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1738,847,860 - 38,853,764 (-)EnsemblGRCh38hg38GRCh38
GRCh371737,004,113 - 37,009,974 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361734,259,847 - 34,263,579 (-)NCBINCBI36Build 36hg18NCBI36
Build 341734,259,864 - 34,263,515NCBI
Celera1733,667,292 - 33,671,022 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1732,801,469 - 32,805,199 (-)NCBIHuRef
CHM1_11737,241,607 - 37,245,337 (-)NCBICHM1_1
T2T-CHM13v2.01739,710,917 - 39,716,772 (-)NCBIT2T-CHM13v2.0
Rpl23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,668,352 - 97,673,265 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,668,353 - 97,673,263 (-)EnsemblGRCm39 Ensembl
GRCm381197,777,526 - 97,782,439 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,777,527 - 97,782,437 (-)EnsemblGRCm38mm10GRCm38
MGSCv371197,638,840 - 97,643,753 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361197,593,633 - 97,598,463 (-)NCBIMGSCv36mm8
Celera11107,427,049 - 107,431,962 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.1NCBI
Rpl23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,892,880 - 13,898,079 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,892,880 - 13,898,079 (-)NCBIChiLan1.0ChiLan1.0
RPL23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21926,094,678 - 26,098,436 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11727,978,254 - 27,982,002 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01718,417,964 - 18,421,708 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11718,690,682 - 18,694,434 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1718,690,682 - 18,698,253 (+)Ensemblpanpan1.1panPan2
RPL23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1923,397,143 - 23,403,060 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl923,262,282 - 23,403,054 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha922,868,978 - 22,874,894 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0924,191,986 - 24,197,893 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl924,056,665 - 24,197,887 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1922,963,922 - 22,970,049 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0923,224,986 - 23,230,898 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0923,350,498 - 23,356,591 (+)NCBIUU_Cfam_GSD_1.0
Rpl23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560222,829,881 - 22,834,504 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649014,240,638 - 14,245,194 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649014,240,635 - 14,245,194 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,279,965 - 23,285,515 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,279,965 - 23,285,538 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPL23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11667,341,370 - 67,345,141 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607738,335,135 - 38,338,860 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,874,977 - 3,883,068 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,875,181 - 3,880,386 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpl23
24 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:91
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000005471
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
12880053Cm104Cardiac mass QTL 1040.009heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)107345299283463334Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
12880050Am10Aortic mass QTL 100.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)107437208484007272Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107437208494965338Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)107563188787055282Rat
2325836Bp346Blood pressure QTL 3460.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608584007272Rat
10450495Bp383Blood pressure QTL 3830.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107624608594965338Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
724516Uae17Urinary albumin excretion QTL 173.6urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)107821062285220348Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)107877551698279596Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)107889965587307728Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)107981378985160854Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1080515287101325465Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat

Markers in Region
D17S2026  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21082,771,935 - 82,772,195 (+)MAPPERmRatBN7.2
Rnor_6.01085,721,456 - 85,721,715NCBIRnor6.0
Rnor_5.01085,510,967 - 85,511,226UniSTSRnor5.0
RGSC_v3.41086,527,647 - 86,527,906UniSTSRGSC3.4
Celera1081,527,340 - 81,527,599UniSTS
Cytogenetic Map10q31UniSTS
RH132814  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21082,771,569 - 82,771,754 (+)MAPPERmRatBN7.2
Rnor_6.01085,721,090 - 85,721,274NCBIRnor6.0
Rnor_5.01085,510,601 - 85,510,785UniSTSRnor5.0
RGSC_v3.41086,527,281 - 86,527,465UniSTSRGSC3.4
Celera1081,526,974 - 81,527,158UniSTS
RH 3.4 Map10877.5UniSTS
Cytogenetic Map10q31UniSTS
RH137045  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21082,771,623 - 82,771,841 (+)MAPPERmRatBN7.2
Rnor_6.01085,721,144 - 85,721,361NCBIRnor6.0
Rnor_5.01085,510,655 - 85,510,872UniSTSRnor5.0
RGSC_v3.41086,527,335 - 86,527,552UniSTSRGSC3.4
Celera1081,527,028 - 81,527,245UniSTS
RH 3.4 Map10795.4UniSTS
Cytogenetic Map10q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 3 22 22 16 12 16 28 18 33 3
Medium 21 35 25 7 25 8 11 46 17 8 8 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005471   ⟹   ENSRNOP00000005471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1082,771,538 - 82,775,870 (-)Ensembl
Rnor_6.0 Ensembl1085,721,394 - 85,725,429 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107348   ⟹   ENSRNOP00000088533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1082,771,538 - 82,775,870 (-)Ensembl
RefSeq Acc Id: NM_001007599   ⟹   NP_001007600
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81083,268,223 - 83,272,184 (-)NCBI
mRatBN7.21082,771,878 - 82,775,840 (-)NCBI
Rnor_6.01085,721,398 - 85,725,359 (-)NCBI
Rnor_5.01085,510,909 - 85,514,870 (-)NCBI
RGSC_v3.41086,527,589 - 86,531,549 (-)RGD
Celera1081,527,282 - 81,531,200 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001007600 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58500 (Get FASTA)   NCBI Sequence Viewer  
  EDM05884 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005471
  ENSRNOP00000005471.6
  ENSRNOP00000088533.1
GenBank Protein P62832 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001007600   ⟸   NM_001007599
- UniProtKB: P62832 (UniProtKB/Swiss-Prot),   A6HIM8 (UniProtKB/TrEMBL),   A0A8L2Q239 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005471   ⟸   ENSRNOT00000005471
RefSeq Acc Id: ENSRNOP00000088533   ⟸   ENSRNOT00000107348

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62832-F1-model_v2 AlphaFold P62832 1-140 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697650
Promoter ID:EPDNEW_R8175
Type:multiple initiation site
Name:Rpl23_1
Description:ribosomal protein L23
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01085,725,366 - 85,725,426EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62067 AgrOrtholog
BioCyc Gene G2FUF-23400 BioCyc
Ensembl Genes ENSRNOG00000004107 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005471 ENTREZGENE
  ENSRNOT00000005471.8 UniProtKB/TrEMBL
  ENSRNOT00000107348.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.150.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6921061 IMAGE-MGC_LOAD
InterPro Ribosomal_L14_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L14P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L14P_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29282 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72962 IMAGE-MGC_LOAD
NCBI Gene 29282 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L23 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11761 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl23 PhenoGen
PROSITE RIBOSOMAL_L14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004107 RatGTEx
SMART Ribosomal_L14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50193 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC230267
UniProt A0A8I6AA01_RAT UniProtKB/TrEMBL
  A0A8L2Q239 ENTREZGENE, UniProtKB/TrEMBL
  A6HIM8 ENTREZGENE, UniProtKB/TrEMBL
  P62832 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P23131 UniProtKB/Swiss-Prot
  P24048 UniProtKB/Swiss-Prot
  Q29246 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rpl23  ribosomal protein L23      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_homology has homology to S. cerevisiae L17a and E. coli L14 ribosomal proteins 631889