Cep85l (centrosomal protein 85-like) - Rat Genome Database

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Gene: Cep85l (centrosomal protein 85-like) Rattus norvegicus
Analyze
Symbol: Cep85l
Name: centrosomal protein 85-like
RGD ID: 2319745
Description: Predicted to be involved in neuron migration. Predicted to be located in pericentriolar material. Predicted to be active in centrosome. Human ortholog(s) of this gene implicated in lissencephaly 10. Orthologous to human CEP85L (centrosomal protein 85 like); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: centrosomal protein of 85 kDa-like; hypothetical protein LOC100365935; LOC100361627; LOC100365935; rCG22129-like; uncharacterized protein LOC100365935
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82033,111,114 - 33,282,182 (-)NCBIGRCr8
mRatBN7.22032,568,417 - 32,739,449 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2032,572,741 - 32,739,516 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2033,586,624 - 33,700,866 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02032,977,340 - 33,091,585 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02033,711,329 - 33,818,492 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02034,574,043 - 34,743,142 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2034,575,950 - 34,684,418 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02036,332,304 - 36,442,123 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42031,943,309 - 32,050,441 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2033,952,642 - 34,059,429 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Cep85l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82033,111,114 - 33,282,182 (-)NCBIGRCr8
mRatBN7.22032,568,417 - 32,739,449 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2032,572,741 - 32,739,516 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2033,586,624 - 33,700,866 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02032,977,340 - 33,091,585 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02033,711,329 - 33,818,492 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02034,574,043 - 34,743,142 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2034,575,950 - 34,684,418 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02036,332,304 - 36,442,123 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42031,943,309 - 32,050,441 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2033,952,642 - 34,059,429 (-)NCBICelera
Cytogenetic Map20q11NCBI
CEP85L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386118,460,772 - 118,710,089 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6118,460,772 - 118,710,075 (-)EnsemblGRCh38hg38GRCh38
GRCh376118,781,935 - 119,031,252 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366118,892,932 - 119,079,713 (-)NCBINCBI36Build 36hg18NCBI36
Build 346118,919,304 - 119,080,376NCBI
Celera6119,525,226 - 119,775,770 (-)NCBICelera
Cytogenetic Map6q22.31NCBI
HuRef6116,363,682 - 116,613,048 (-)NCBIHuRef
CHM1_16119,046,108 - 119,295,219 (-)NCBICHM1_1
T2T-CHM13v2.06119,645,874 - 119,895,829 (-)NCBIT2T-CHM13v2.0
Cep85l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391053,149,537 - 53,256,765 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1053,149,539 - 53,256,043 (-)EnsemblGRCm39 Ensembl
GRCm381053,273,441 - 53,379,883 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1053,273,443 - 53,379,947 (-)EnsemblGRCm38mm10GRCm38
MGSCv371052,997,887 - 53,099,651 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361053,095,139 - 53,102,576 (-)NCBIMGSCv36mm8
Celera1054,105,004 - 54,206,925 (-)NCBICelera
Cytogenetic Map10B3NCBI
Cep85l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554361,393,493 - 1,465,373 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554361,352,481 - 1,482,061 (-)NCBIChiLan1.0ChiLan1.0
CEP85L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25138,459,784 - 138,669,353 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16136,369,395 - 136,563,311 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06116,270,880 - 116,461,166 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16120,411,273 - 120,661,161 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6120,415,944 - 120,603,797 (-)Ensemblpanpan1.1panPan2
CEP85L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1158,494,552 - 58,643,105 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl158,494,560 - 58,691,054 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha159,297,390 - 59,444,212 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0158,678,940 - 58,826,055 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl158,595,027 - 58,826,040 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1158,579,767 - 58,726,643 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0158,421,154 - 58,567,901 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0159,053,071 - 59,199,988 (-)NCBIUU_Cfam_GSD_1.0
Cep85l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946109,245,396 - 109,401,865 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366581,352,264 - 1,491,079 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366581,351,968 - 1,490,861 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP85L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl143,392,645 - 43,563,695 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1143,392,630 - 43,564,835 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2148,621,999 - 48,790,073 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP85L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11355,203,782 - 55,420,819 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1355,225,893 - 55,420,795 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604027,520,201 - 27,728,678 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep85l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479811,482,438 - 11,593,028 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479811,482,163 - 11,592,698 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cep85l
1325 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:155
Count of miRNA genes:123
Interacting mature miRNAs:132
Transcripts:ENSRNOT00000063920
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat

Markers in Region
RH133632  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22032,637,611 - 32,637,811 (+)MAPPERmRatBN7.2
Rnor_6.02034,640,957 - 34,641,156NCBIRnor6.0
Rnor_5.02036,398,679 - 36,398,878UniSTSRnor5.0
RGSC_v3.42032,008,164 - 32,008,363UniSTSRGSC3.4
Celera2034,016,902 - 34,017,101UniSTS
RH 3.4 Map20332.11UniSTS
Cytogenetic Map20q11UniSTS
RH142470  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22032,671,498 - 32,671,654 (+)MAPPERmRatBN7.2
Rnor_6.02034,674,841 - 34,674,996NCBIRnor6.0
Rnor_5.02036,432,563 - 36,432,718UniSTSRnor5.0
RGSC_v3.42032,042,048 - 32,042,203UniSTSRGSC3.4
Celera2034,050,764 - 34,050,919UniSTS
RH 3.4 Map20332.62UniSTS
RH140536  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22032,637,624 - 32,637,868 (+)MAPPERmRatBN7.2
Rnor_6.02034,640,970 - 34,641,213NCBIRnor6.0
Rnor_5.02036,398,692 - 36,398,935UniSTSRnor5.0
RGSC_v3.42032,008,177 - 32,008,420UniSTSRGSC3.4
Celera2034,016,915 - 34,017,158UniSTS
RH 3.4 Map20332.63UniSTS
Cytogenetic Map20q11UniSTS
BE100029  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22032,631,348 - 32,631,498 (+)MAPPERmRatBN7.2
Rnor_6.02034,634,695 - 34,634,844NCBIRnor6.0
Rnor_5.02036,392,417 - 36,392,566UniSTSRnor5.0
RGSC_v3.42032,001,902 - 32,002,051UniSTSRGSC3.4
Celera2034,010,640 - 34,010,789UniSTS
RH 3.4 Map20332.52UniSTS
Cytogenetic Map20q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 18 8 16 8 8 9 18 2 14 9 8
Low 3 41 39 33 3 33 2 56 33 27 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000063920   ⟹   ENSRNOP00000058939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2032,572,741 - 32,680,164 (-)Ensembl
Rnor_6.0 Ensembl2034,575,950 - 34,683,506 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078420   ⟹   ENSRNOP00000070599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2032,572,741 - 32,680,164 (-)Ensembl
Rnor_6.0 Ensembl2034,576,111 - 34,679,779 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087220   ⟹   ENSRNOP00000072010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2032,572,741 - 32,739,516 (-)Ensembl
Rnor_6.0 Ensembl2034,575,954 - 34,684,418 (-)Ensembl
RefSeq Acc Id: NM_001177829   ⟹   NP_001171300
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,115,438 - 33,222,843 (-)NCBI
mRatBN7.22032,572,741 - 32,680,164 (-)NCBI
Rnor_6.02034,575,950 - 34,683,506 (-)NCBI
Celera2033,952,642 - 34,059,429 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601524   ⟹   XP_017457013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,111,114 - 33,222,889 (-)NCBI
mRatBN7.22032,568,417 - 32,680,212 (-)NCBI
Rnor_6.02034,574,044 - 34,683,575 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601525   ⟹   XP_017457014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,111,114 - 33,282,182 (-)NCBI
mRatBN7.22032,568,417 - 32,739,449 (-)NCBI
Rnor_6.02034,574,044 - 34,743,142 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601526   ⟹   XP_017457015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,111,114 - 33,282,135 (-)NCBI
mRatBN7.22032,568,417 - 32,739,411 (-)NCBI
Rnor_6.02034,574,044 - 34,743,142 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098358   ⟹   XP_038954286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,111,114 - 33,222,464 (-)NCBI
mRatBN7.22032,568,417 - 32,679,785 (-)NCBI
RefSeq Acc Id: XM_063278909   ⟹   XP_063134979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,111,114 - 33,282,182 (-)NCBI
RefSeq Acc Id: XM_063278910   ⟹   XP_063134980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,111,114 - 33,222,464 (-)NCBI
RefSeq Acc Id: XM_063278911   ⟹   XP_063134981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,111,114 - 33,185,698 (-)NCBI
RefSeq Acc Id: XM_063278912   ⟹   XP_063134982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,111,114 - 33,185,722 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001171300   ⟸   NM_001177829
- UniProtKB: F7EXF4 (UniProtKB/TrEMBL),   A0A0G2JYC3 (UniProtKB/TrEMBL),   A6K489 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457015   ⟸   XM_017601526
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JYC3 (UniProtKB/TrEMBL),   A0A0G2K1W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457014   ⟸   XM_017601525
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JYC3 (UniProtKB/TrEMBL),   A0A0G2K1W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457013   ⟸   XM_017601524
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JYC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000058939   ⟸   ENSRNOT00000063920
RefSeq Acc Id: ENSRNOP00000072010   ⟸   ENSRNOT00000087220
RefSeq Acc Id: ENSRNOP00000070599   ⟸   ENSRNOT00000078420
RefSeq Acc Id: XP_038954286   ⟸   XM_039098358
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134979   ⟸   XM_063278909
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063134980   ⟸   XM_063278910
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063134982   ⟸   XM_063278912
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063134981   ⟸   XM_063278911
- Peptide Label: isoform X6

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7EXF4-F1-model_v2 AlphaFold F7EXF4 1-805 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701632
Promoter ID:EPDNEW_R12151
Type:single initiation site
Name:Cep85l_2
Description:centrosomal protein 85-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R12152  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02034,679,802 - 34,679,862EPDNEW
RGD ID:13701628
Promoter ID:EPDNEW_R12152
Type:initiation region
Name:Cep85l_1
Description:centrosomal protein 85-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R12151  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02034,683,504 - 34,683,564EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2319745 AgrOrtholog
BioCyc Gene G2FUF-3632 BioCyc
Ensembl Genes ENSRNOG00000000414 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000063920 ENTREZGENE
  ENSRNOT00000063920.4 UniProtKB/TrEMBL
  ENSRNOT00000078420.2 UniProtKB/TrEMBL
  ENSRNOT00000087220.2 UniProtKB/TrEMBL
InterPro Cep85/Cep85L UniProtKB/TrEMBL
KEGG Report rno:100365935 UniProtKB/TrEMBL
NCBI Gene Cep85l ENTREZGENE
PANTHER PTHR31075 UniProtKB/TrEMBL
  PTHR31075:SF2 UniProtKB/TrEMBL
PhenoGen Cep85l PhenoGen
RatGTEx ENSRNOG00000000414 RatGTEx
UniProt A0A0G2JYC3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K1W5 ENTREZGENE, UniProtKB/TrEMBL
  A6K489 ENTREZGENE, UniProtKB/TrEMBL
  B1H279_RAT UniProtKB/TrEMBL
  F7EXF4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-24 Cep85l  centrosomal protein 85-like  LOC100365935  rCG22129-like  Data merged from RGD:2324555 737654 APPROVED
2012-08-22 Cep85l  centrosomal protein 85-like  LOC100361627  rCG22129-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100365935  rCG22129-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-05 LOC100361627  rCG22129-like      Symbol and Name status set to provisional 70820 PROVISIONAL